RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus
Liberibacter asiaticus str. psy62]
(337 letters)
>gnl|CDD|161922 TIGR00549, mevalon_kin, mevalonate kinase. Paracoccus exhibits two
genes within the phosphomevalonate/mevalonate kinase
family, one of which falls between trusted and noise
cutoffs of this model. The degree of divergence is high,
but if the trees created from this model are correct,
the proper names of these genes have been swapped.
Length = 273
Score = 98.1 bits (245), Expect = 3e-21
Identities = 80/290 (27%), Positives = 123/290 (42%), Gaps = 33/290 (11%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGH 74
AP K+IL GE++ +YG A+A I +T IE S I S S +
Sbjct: 1 APGKIILFGEHAVVYGEPAIAAPIPLRTT--VTVIESSDGSFIESDLGRGSLDDAP---- 54
Query: 75 QIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSS 134
Q +IA+ + S L P + +++ S IP G G GSS+
Sbjct: 55 QELDGLVSYIAEALSYFSELNPPP-----------------LEIEIDSEIPPGRGLGSSA 97
Query: 135 AIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYI--NPP 192
A+ AL AL+ +KE+L E++ HGK ID+ T GG +Y
Sbjct: 98 AVAVALIRALADYFGSEL-SKEELAKLANEAEKIAHGKPSGIDTATSTYGGPVYFEKGEG 156
Query: 193 QIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFSQS-----SIWSEFNAVTNEMMENI 247
+ K +L G + +TG+ ST E V+ V Q + SI +T E +
Sbjct: 157 EFTKLISLDGYFVIADTGVS-GSTKEAVARVRQLLERFPELIDSIMDAIGELTLEAKAAL 215
Query: 248 QKKDAEKTYKSVRVNQSLLESIGVVPETVGKFI-RCIENNGGSAKIAGAG 296
Q D E + + +NQ LL+++GV + + + + AK+ GAG
Sbjct: 216 QDGDVESLGELMNINQGLLKALGVSHPKLDQLVETARKAGALGAKLTGAG 265
>gnl|CDD|179677 PRK03926, PRK03926, mevalonate kinase; Provisional.
Length = 302
Score = 75.5 bits (186), Expect = 2e-14
Identities = 73/295 (24%), Positives = 118/295 (40%), Gaps = 55/295 (18%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSF-EACRLLG 73
AP K+ L GE++ +YG A+A AI L T + +S IE + +
Sbjct: 6 APGKIYLFGEHAVVYGKPAIACAID-----LRTYVRAEFND--DSIYIESDYGKTGEKHP 58
Query: 74 H--QIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFG 131
+ ++ R+ K G+++ + S IP+GSG G
Sbjct: 59 YVSAAIEKMREEADKD---------------------------GVTVSITSQIPVGSGLG 91
Query: 132 SSSAIISALSLALSSITHQPFCNKEKLIAETGY-IERLQHGKTGIIDSTTIVMGGIIYIN 190
SS+A+ A AL+ + +E IA+ G+ +E L G D+ MGG + I
Sbjct: 92 SSAAVTVATIGALNRLLGLGLSLEE--IAKLGHKVELLVQGAASPTDTYVSTMGGFVTIP 149
Query: 191 PPQIIKNETL---VGEWWAINTGMPESSTGECVSFVEQHFSQ-----SSIWSEFNAVTNE 242
+ + VG TG ST E V+ V + + I S ++ +
Sbjct: 150 DRKKLPFPECGIVVG-----YTGS-SGSTKELVANVRKLKEEYPELIEPILSSIGKISEK 203
Query: 243 MMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAKIAGAG 296
E I D + + +NQ LL+++GV + + + I G AKI GAG
Sbjct: 204 GEELILSGDYVSLGELMNINQGLLDALGVSTKELSELIYAARTAGALGAKITGAG 258
>gnl|CDD|140319 PTZ00298, PTZ00298, mevalonate kinase; Provisional.
Length = 328
Score = 45.6 bits (108), Expect = 2e-05
Identities = 79/316 (25%), Positives = 125/316 (39%), Gaps = 57/316 (18%)
Query: 12 HSIAPAKVILSGEYSSLYGASALAVAITFYL--RALLTTIEPSLIRIINSQTIEYSFEAC 69
I KVIL GE+ +YGA A+ I Y R LT P L
Sbjct: 12 KHIGYGKVILFGEHFVVYGAEAIVAGIDEYTECRLELTKGVPGLQ--------------- 56
Query: 70 RLLGHQIDQRHR--DFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPI- 126
+DQR +I +K H L+L RHL + L +H P+
Sbjct: 57 -----VVDQRPAVPGYIVEKRE-EQRKAH--QLVL----RHLNIDTSVDGLKMHLGGPLV 104
Query: 127 -GSGFGSSSAIISALSLALSSITH----QPFCNKEKLIAETGYIERLQHGKTGIIDSTTI 181
SG G+S++ + +LS ALS + + N + E GY HG D+T
Sbjct: 105 PSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGY-----HGTPSGADNTAA 159
Query: 182 VMGGIIY---INPPQIIKNETLVGEWWAI--NTGMPESST---GECVSFVEQHFSQ-SSI 232
GG+I +N + K + + +TG+ S+T G+ E + + +
Sbjct: 160 TYGGLISYRRVNGKSVFKRIAFQQPLYLVVCSTGITASTTKVVGDVRKLKENQPTWFNRL 219
Query: 233 WSEFNAVTNEMMENIQKKDAEKTYKSVRVNQSLLESIGVVPETVGKFIRCIENNGG-SAK 291
+NA +E E +QK + + + + N L + + V + ++ G AK
Sbjct: 220 LENYNACVSEAKEALQKGNLFRVGELMNANHDLCQKLTVSCRELDSIVQTCRTYGALGAK 279
Query: 292 IAGAGSIRGEKAGLVL 307
++G G RG GLV+
Sbjct: 280 MSGTG--RG---GLVV 290
>gnl|CDD|178070 PLN02451, PLN02451, homoserine kinase.
Length = 370
Score = 43.2 bits (102), Expect = 1e-04
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 113 SCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIA 160
S G+SL LH +P+GSG GSS+A +A ++A++ + P + ++A
Sbjct: 132 SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLA 179
>gnl|CDD|179248 PRK01212, PRK01212, homoserine kinase; Provisional.
Length = 301
Score = 42.4 bits (101), Expect = 2e-04
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 85 AKKIPITSVLTHPNDLILYIFNRHLPHISC--GISLDLHSTIPIGSGFGSSSA-IISALS 141
A K+P L +L+ + L + G+ ++L IP+G G GSS+A I++ L
Sbjct: 53 ADKLP----LDPEKNLVYQAALKFLEKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGL- 107
Query: 142 LALSSITHQPFCNKEKLIAETGYIER 167
+A + + P +KE+L+ E
Sbjct: 108 VAANELAGLPL-SKEELLQLATEGEG 132
>gnl|CDD|161727 TIGR00131, gal_kin, galactokinase. The galactokinases found by
this model are divided into two sets. Prokaryotic forms
are generally shorter. The eukaryotic forms are longer
because of additional central regions and in some cases
are known to be bifunctional, with regulatory activities
that are independent of galactokinase activity.
Length = 386
Score = 40.6 bits (95), Expect = 7e-04
Identities = 38/174 (21%), Positives = 64/174 (36%), Gaps = 20/174 (11%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRI----INSQTIEYSFEACR 70
AP +V L GE++ S L AI F + + +RI +++ E S +
Sbjct: 22 APGRVNLIGEHTDYNDGSVLPCAIDFGTLCAVAVRDDKNVRIYLANADNKFAERSLDL-P 80
Query: 71 LLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGF 130
L G ++ F +L++ G + +P GSG
Sbjct: 81 LDGSEVSDWANYFKG---------------VLHVAQERFNSFPLGADIVCSGNVPTGSGL 125
Query: 131 GSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMG 184
SS+A A+ L ++ H P +K+ L+ GI+D V+G
Sbjct: 126 SSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLG 179
>gnl|CDD|129295 TIGR00191, thrB, homoserine kinase. P.aeruginosa homoserine kinase
seems not to be homologous (see PROSITE:PDOC0054).
Length = 302
Score = 39.3 bits (92), Expect = 0.001
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 10/87 (11%)
Query: 85 AKKIPITSVLTHPNDLILYI----FNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISAL 140
+KIP T P D ++Y F L + + L IP+G G GSS+A I A
Sbjct: 51 VEKIP-----TEPTDNLIYQVAKRFLDQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAA 105
Query: 141 SLALSSITHQPFCNKEKLIAETGYIER 167
A + + P +KE+L+ +E
Sbjct: 106 LAAANELCGLPL-SKERLLDYASELEG 131
>gnl|CDD|178136 PLN02521, PLN02521, galactokinase.
Length = 497
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 114 CGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAE-TGYIERLQHGK 172
G+ + + T+P GSG SS+A++ + ++A+ + F KE +A+ T ER +
Sbjct: 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKE--VAQFTCKCERHIGTQ 205
Query: 173 TGIIDSTTIVMG 184
+G +D +M
Sbjct: 206 SGGMDQAISIMA 217
>gnl|CDD|178281 PLN02677, PLN02677, mevalonate kinase.
Length = 387
Score = 38.3 bits (89), Expect = 0.003
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALL 46
AP K+IL+GE++ ++G++A+A AI Y L
Sbjct: 7 APGKIILAGEHAVVHGSTAVAAAIDLYTYVSL 38
Score = 37.1 bits (86), Expect = 0.006
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 45/211 (21%)
Query: 122 STIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLI---------------AETGYIE 166
S +P+GSG GSS+A ALS AL + + + A G E
Sbjct: 136 SELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEG--E 193
Query: 167 RLQHGKTGIIDSTTIVMGGIIYI-----------NPPQIIKNETLVGEWWAINTGMPESS 215
++ HGK ID+T G +I P +++ T VG NT +
Sbjct: 194 KIIHGKPSGIDNTVSTYGNMIKFKSGELTRLQSNMPLKMLITNTRVGR----NTKALVAG 249
Query: 216 TGECVSFVEQH-FSQSSIWSEFNAVTNEMMENIQ---------KKDAEKTYKSVRVNQSL 265
E +H + S+++ ++++ E+ IQ + EK + + +NQ L
Sbjct: 250 VSERAL---RHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKELMEMNQGL 306
Query: 266 LESIGVVPETVGKFIRCIENNGGSAKIAGAG 296
L+ +GV ++ +R +K+ GAG
Sbjct: 307 LQCMGVSHSSIETVLRTTLKYKLVSKLTGAG 337
>gnl|CDD|184040 PRK13412, fkp, bifunctional
fucokinase/L-fucose-1-P-guanylyltransferase;
Provisional.
Length = 974
Score = 36.7 bits (85), Expect = 0.007
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 35/216 (16%)
Query: 108 HLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFC----NKEKLIAETG 163
L GI + L + IP GSG G+SS + + + A+S FC +K ++ T
Sbjct: 719 QLKAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISD-----FCGLAWDKNEICNRTL 773
Query: 164 YIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNETLVGEW--WAIN------------- 208
+E+L G D V+ G+ + LV W ++
Sbjct: 774 VLEQLLTTGGGWQDQYGGVLPGVKLLQTGAGFAQSPLV-RWLPDSLFTQPEYRDCHLLYY 832
Query: 209 TGMPESSTGECVSFVEQHFSQS----SIWSEFNAVTNEMMENIQKKDAEKTYKSVR---- 260
TG+ ++ G V F S + E A +M E IQ+ + E+ + V
Sbjct: 833 TGITRTAKGILAEIVRSMFLNSTAHLQLLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWE 892
Query: 261 VNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAG 296
N++L G P V I I++ K+ GAG
Sbjct: 893 QNKAL--DSGTNPAAVEAIIELIKDYTLGYKLPGAG 926
>gnl|CDD|162602 TIGR01920, Shik_kin_archae, shikimate kinase. This model
represents the shikimate kinase (SK) gene found in
archaea which is only distantly related to homoserine
kinase (thrB) and not atr all to the bacterial SK
enzyme. The SK from M. janaschii has been overexpressed
in E. coli and characterized. SK catalyzes the fifth
step of the biosynthesis of chorismate from
D-erythrose-4-phosphate and phosphoenolpyruvate.
Length = 261
Score = 36.2 bits (84), Expect = 0.013
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 115 GISLDLHSTIPIGSGFGSSSAIISALSLA 143
G+ +++ S IP GSG SSSA+++AL A
Sbjct: 64 GLEVEVESEIPAGSGLKSSSALVNALVEA 92
>gnl|CDD|130287 TIGR01220, Pmev_kin_Gr_pos, phosphomevalonate kinase, ERG8-type,
Gram-positive branch. This enzyme is part of the
mevalonate pathway, one of two alternative pathways for
the biosynthesis of IPP. In an example of nonorthologous
gene displacement, two different types of
phosphomevalonate kinase are found - the animal type and
this ERG8 type. This model represents the low GC
Gram-positive organism forms of the ERG8 type of
phosphomevalonate kinase.
Length = 358
Score = 34.9 bits (80), Expect = 0.032
Identities = 76/347 (21%), Positives = 123/347 (35%), Gaps = 75/347 (21%)
Query: 15 APAKVILSGEYSSLY-GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLG 73
AP K+ ++GEY+ + G A+ VA+ R + T+E + + + +
Sbjct: 5 APGKLFVAGEYAVVEPGNPAILVAVD---RFVTVTVEDADGAADVIISSDLGPQPVGWRR 61
Query: 74 H--QIDQRHRDFIAKKIPITSVLT--HPNDLILYIFNRHLPHISCGISLDLHSTIPIGSG 129
H ++ R D + + V++ + N+ LP + +S L G
Sbjct: 62 HDGRLVVRDPD---ARSALAYVVSAIETVERYAGERNQKLPALHLSVSSRLDEADGRKYG 118
Query: 130 FGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQ-------HGKTGIIDSTTIV 182
GSS A+ A AL++ F + E I +L K D
Sbjct: 119 LGSSGAVTVATVKALNA-----FYDLE---LSNDEIFKLAMLATAELQPKGSCGDIAAST 170
Query: 183 MGGII------------------------------YINPPQIIKNETLVGEWWAINTGMP 212
GG I I P K TL+ W TG P
Sbjct: 171 YGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGW----TGSP 226
Query: 213 ESSTGECVSFVEQHFSQ-SSIWSEFNAVTNEMMENI----QKKDAEKTYKSVRVNQSLLE 267
+ST VS V + + S+ + F + + +E+ + D K +R N+ L
Sbjct: 227 -ASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELA 285
Query: 268 SI----GVVPETVGKFIRC--IENNGGSAKIAGAGSIRGEKAGLVLV 308
+ GV ET C E GG+AK +GAG G G+ ++
Sbjct: 286 RLDDEVGVGIETEKLKALCDAAEAYGGAAKPSGAG---GGDCGIAIL 329
>gnl|CDD|163380 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 33.0 bits (76), Expect = 0.11
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 210 GMPESSTGECVSFVEQHFSQSSIWSEFNAVTN 241
GMP+ E ++ F + IW F AV N
Sbjct: 231 GMPD----EVKKMFDEEFKTNDIWKHFEAVKN 258
>gnl|CDD|179230 PRK01123, PRK01123, shikimate kinase; Provisional.
Length = 282
Score = 32.5 bits (75), Expect = 0.17
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 115 GISLDLHSTIPIGSGFGSSSAIISALSLALSSI 147
G ++ S IP+ SG SSSA +A LA
Sbjct: 75 GATVRTKSEIPLASGLKSSSAAANATVLATLDA 107
>gnl|CDD|128338 smart00022, PLAc, Cytoplasmic phospholipase A2, catalytic subunit.
Cytosolic phospholipases A2 hydrolyse arachidonyl
phospholipids. Family includes phospholipases B
isoforms.
Length = 549
Score = 30.5 bits (69), Expect = 0.73
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 8/47 (17%)
Query: 170 HGKTGIIDSTTIVMG--------GIIYINPPQIIKNETLVGEWWAIN 208
HG G++ S T + G G + N +K + W +
Sbjct: 107 HGLGGLLQSATYLAGLSGGTWLVGTLASNNFTPVKGPEEINSEWMFS 153
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional.
Length = 363
Score = 29.8 bits (67), Expect = 1.1
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 115 GISLDLHSTIPIGSGFGSSSAIISALSLALSSIT 148
G ++ + S + IGSG SS+A+ A+ A+ + T
Sbjct: 91 GGAMSITSDVEIGSGLSSSAALECAVLGAVGAAT 124
>gnl|CDD|184768 PRK14612, PRK14612, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 276
Score = 29.3 bits (66), Expect = 1.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 113 SCGISLDLHSTIPIGSGFGSSSAIISALSLALS 145
G+ + L +P+ +G G S+ +A LAL+
Sbjct: 81 PGGVRITLEKRLPLAAGLGGGSSDAAATLLALA 113
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 29.2 bits (65), Expect = 1.7
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 70 RLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHST------ 123
RL G +ID +H + I K++ +T P D +Y+ + + D S
Sbjct: 2663 RLQGVRIDNKHLEVILKQMLQKVEITDPGD-TMYLVGESIDKLEVDRENDAMSNSGKRPA 2721
Query: 124 --IPIGSGFGSSS----AIISALSLALSS--ITHQPFCNKEKLIA---ETGYIERLQHGK 172
+PI G +S + ISA S ++ +T FC K ++ E + RL
Sbjct: 2722 HYLPILQGITRASLETSSFISAASFQETTKVLTEAAFCGKSDPLSGLKENVIVGRLIPAG 2781
Query: 173 TGII 176
TG+I
Sbjct: 2782 TGLI 2785
>gnl|CDD|179653 PRK03817, PRK03817, galactokinase; Provisional.
Length = 351
Score = 28.8 bits (65), Expect = 2.0
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 115 GISLDLHSTIPIGSGFGSSSAIISALSLALSS 146
G+ + S +PIG+G SS+++ A++ AL+
Sbjct: 86 GVKGKVSSNLPIGAGLSSSASLEVAVAYALNE 117
>gnl|CDD|148473 pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase. This
family consists of several bacterial
fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which
seem to be specific to phylum Firmicutes.
Fructose-1,6-bisphosphatase (FBPase) is a well known
enzyme involved in gluconeogenesis. This family does not
seem to be structurally related to pfam00316.
Length = 641
Score = 28.3 bits (64), Expect = 2.6
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 10/36 (27%)
Query: 147 ITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIV 182
++H+PF +KEK I E T I+ +T +V
Sbjct: 581 VSHEPFTSKEKAIEE----------GTDILSTTRVV 606
>gnl|CDD|140312 PTZ00290, PTZ00290, galactokinase; Provisional.
Length = 468
Score = 28.2 bits (63), Expect = 3.0
Identities = 10/33 (30%), Positives = 23/33 (69%)
Query: 115 GISLDLHSTIPIGSGFGSSSAIISALSLALSSI 147
G+ + +H T+P+G+G +S++ AL A++++
Sbjct: 134 GVCMVVHGTLPMGAGMSASASFGVALLNAINTV 166
>gnl|CDD|181532 PRK08667, PRK08667, hydrogenase membrane subunit; Validated.
Length = 644
Score = 28.2 bits (63), Expect = 3.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 9 PHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSL 53
P+AH +P+ V S+L L VA+ +R L+ + P L
Sbjct: 229 PYAHPASPSNV------SALMSGVMLKVAVYGLVRFLMDVLSPEL 267
>gnl|CDD|134340 PRK00650, PRK00650, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 288
Score = 27.9 bits (62), Expect = 4.0
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 94 LTHPNDLI---LYIFNRHLPHISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITHQ 150
L P++ I + +F R I+ +S + IPIG+G S+ + AL+ I
Sbjct: 57 LETPSNSIWKSVALF-RRYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQT 115
Query: 151 PFCNKE 156
++E
Sbjct: 116 GLSDEE 121
>gnl|CDD|182879 PRK10977, PRK10977, hypothetical protein; Provisional.
Length = 509
Score = 27.6 bits (62), Expect = 5.4
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 17/61 (27%)
Query: 72 LGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIF-NRHLPHISCGISLDLHST----IPI 126
LG++I + + + P Y + R L H GIS D T IP
Sbjct: 342 LGYRISAQLAEIVE---------NTPV---KYGWGGRALLHAQSGISSDKGVTPGVRIPY 389
Query: 127 G 127
G
Sbjct: 390 G 390
>gnl|CDD|183964 PRK13307, PRK13307, bifunctional formaldehyde-activating
enzyme/3-hexulose-6-phosphate synthase; Provisional.
Length = 391
Score = 27.3 bits (61), Expect = 5.9
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 263 QSLLESIGVVPETV--------------GKFIRCIENNGGSAKIAGAGSIRGEKAGLVLV 308
LLES+ V P+ V I+ I+ GG +A AG +R E L
Sbjct: 290 VKLLESLKVKPDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALK 349
Query: 309 GGYN 312
G +
Sbjct: 350 AGAD 353
>gnl|CDD|162655 TIGR02004, PTS-IIBC-malX, PTS system, maltose and glucose-specific
IIBC component. This model represents a family of PTS
enzyme II fused B and C components including and most
closely related to the MalX maltose and glucose-specific
transporter of E. coli. A pair of paralogous genes from
E. coli strain CFT073 score between trusted and noise
and may have diverged sufficiently to have an altered
substrate specificity.
Length = 517
Score = 27.1 bits (60), Expect = 6.2
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 25 YSSLYGASALAVAITFYLRALLTTIEPSLIR------IINSQTIEYSFEACRLLGHQIDQ 78
+S G +A+ +AI FYL ++P +R + Q+I+ ++G + +
Sbjct: 92 FSGFVGYTAMNLAINFYLTQTGVLVDPEQLREAGQGMVFGIQSIDTGVLGAVIVGLIVYK 151
Query: 79 RHRDFIAKKIP 89
H F ++P
Sbjct: 152 LHNRFYTVQMP 162
>gnl|CDD|150631 pfam09980, DUF2214, Predicted membrane protein (DUF2214). This
domain, found in various hypothetical bacterial
proteins, has no known function.
Length = 150
Score = 26.8 bits (60), Expect = 7.1
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 25 YSSLYGASALAVAITFYLRAL 45
+YG +AL + IT LR
Sbjct: 44 ADIVYGLAALLLLITGLLRVF 64
>gnl|CDD|180184 PRK05654, PRK05654, acetyl-CoA carboxylase subunit beta; Validated.
Length = 292
Score = 27.1 bits (61), Expect = 7.2
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 3/20 (15%)
Query: 78 QRHRDFIAKKIPITSVLTHP 97
+R + +P SVLT P
Sbjct: 188 KRLSE---AGLPYISVLTDP 204
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 26.9 bits (59), Expect = 7.8
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 310 GYNPEKLSSLYGYTCYKIKEDKN 332
GY P +S+LY C K E K+
Sbjct: 573 GYEPHAISALYIANCSK-GEHKD 594
>gnl|CDD|182064 PRK09762, PRK09762, galactosamine-6-phosphate isomerase;
Provisional.
Length = 232
Score = 26.7 bits (59), Expect = 9.6
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 12/45 (26%)
Query: 193 QIIKNETLVG--------EWWAINTGMPESSTGECVSFVEQHFSQ 229
+I + + V EW +P + G C +F++QH Q
Sbjct: 50 KIHQQQVDVSQLTFVKLDEW----VDLPLTMPGTCETFLQQHIVQ 90
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,369,988
Number of extensions: 340147
Number of successful extensions: 691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 682
Number of HSP's successfully gapped: 39
Length of query: 337
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 243
Effective length of database: 3,963,321
Effective search space: 963087003
Effective search space used: 963087003
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)