RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus
Liberibacter asiaticus str. psy62]
(337 letters)
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 225
Score = 84.6 bits (208), Expect = 1e-17
Identities = 43/212 (20%), Positives = 77/212 (36%), Gaps = 32/212 (15%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQ---TIEYSFEACRL 71
AP KVIL GE++ ++G ALAVA+ +L + + + +L
Sbjct: 10 APGKVILHGEHAVVHGKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQL 69
Query: 72 LG---HQIDQRHRDFIAKKIPITSVLTHPND------------LILYIFNRHLPHISCGI 116
L + + + + V P D L LY+ +
Sbjct: 70 LDTGFLEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSL 129
Query: 117 SLDLHSTIPIGSGFGSSSAIISALSLALSSITHQPFCNKE-------------KLIAETG 163
+ + S +P G+G GSS+A ++ AL + + + K I +
Sbjct: 130 DIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWA 189
Query: 164 Y-IERLQHGKTGIIDSTTIVMGGIIYINPPQI 194
Y ER+ HG +D++ GG + ++
Sbjct: 190 YEGERVIHGNPSGVDNSVSTWGGALRYQQGKM 221
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 180
Score = 74.5 bits (182), Expect = 1e-14
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 15/184 (8%)
Query: 9 PHAHSI---APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYS 65
P + P+KVIL GE++ +YG A+++AI + + + I
Sbjct: 1 PRGSHMIIETPSKVILFGEHAVVYGYRAISMAIDLTSTIEIKETQ-------EDEIILNL 53
Query: 66 FEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIP 125
+ + LG +++ L I + G +++ S IP
Sbjct: 54 NDLNKSLGLNLNEIKNINPNNFGDFKYCLC----AIKNTLDYLNIEPKTGFKINISSKIP 109
Query: 126 IGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGG 185
I G GSS++I A+S ++ +++ +E+ GK I D++TI G
Sbjct: 110 ISCGLGSSASITIGTIKAVSGFYNK-ELKDDEIAKLGYMVEKEIQGKASITDTSTITYKG 168
Query: 186 IIYI 189
I+ I
Sbjct: 169 ILEI 172
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
{Streptococcus pneumoniae r6 [TaxId: 171101]}
Length = 194
Score = 59.5 bits (143), Expect = 3e-10
Identities = 32/186 (17%), Positives = 59/186 (31%), Gaps = 26/186 (13%)
Query: 15 APAKVILSGEYSSLY-GASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLG 73
K+ +GEY+ L G AL I Y+RA I S I
Sbjct: 6 TCGKLYWAGEYAILEPGQLALIKDIPIYMRA---EIAFSDSYRI---------------- 46
Query: 74 HQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGS---GF 130
D + P S++ L+ ++ SL ++ + G
Sbjct: 47 -YSDMFDFAVDLRPNPDYSLIQETIALMGDFLAVRGQNLR-PFSLAIYGKMEREGKKFGL 104
Query: 131 GSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYIN 190
GSS +++ + AL ++ + ++ L T + + + D I ++
Sbjct: 105 GSSGSVVVLVVKALLAL-YNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDLVLYQ 163
Query: 191 PPQIIK 196
K
Sbjct: 164 SFDRQK 169
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis
[TaxId: 1358]}
Length = 205
Score = 54.9 bits (131), Expect = 1e-08
Identities = 29/179 (16%), Positives = 58/179 (32%), Gaps = 15/179 (8%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGH 74
+P ++ L GE++ G +IT L E +++ + + L
Sbjct: 25 SPGRINLIGEHTDYNGGYVFPASITIGTTGLARLREDKKVKLYSENFPKLGVIEFDL--- 81
Query: 75 QIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSS 134
+ K + S ++ + I G L + IP SG SS+
Sbjct: 82 ------DEVEKKDGELWSNYVKG---MIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSA 132
Query: 135 AIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGG---IIYIN 190
++ + + L + + E + +GI+D I G I ++
Sbjct: 133 SLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 191
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus
furiosus [TaxId: 2261]}
Length = 176
Score = 53.7 bits (128), Expect = 2e-08
Identities = 28/176 (15%), Positives = 57/176 (32%), Gaps = 21/176 (11%)
Query: 15 APAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQTIEYSFEACRLLGH 74
+P +V L GE++ + +AI Y T I + + ++ E L +
Sbjct: 4 SPGRVNLIGEHTDYTYGYVMPMAIDLY-----TIITAEKYDKVQLYSEHFNEEKTFTLDN 58
Query: 75 QIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLHSTIPIGSGFGSSS 134
+ K + + G+ + +P+G+G SS+
Sbjct: 59 LTKEGSWIDYVK--------------GVLWVLIQEGYKIGGLKGKITGDLPLGAGLSSSA 104
Query: 135 AIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGK-TGIIDSTTIVMGGIIYI 189
+ + L+ + + + K E G GI+D +V G +
Sbjct: 105 SFEVGILEVLNQLYNLNI-DPLKKALLAKKAENEFVGVPCGILDQFAVVFGKKDNV 159
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 215
Score = 51.0 bits (121), Expect = 1e-07
Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 15/193 (7%)
Query: 2 KQQTSQTPHAHSIAPAKVILSGEYSSLYGASALAVAITFYLRALLTTIEPSLIRIINSQT 61
+++ P AP +V L GE++ L +A+ + + + L+ ++ +
Sbjct: 20 REEFGAEPELAVSAPGRVNLIGEHTDYNQGLVLPMALELMTVLVGSPRKDGLVSLLTTSE 79
Query: 62 IEYSFEACRLLGHQIDQRHRDFIAKKIPITSVLTHPNDLILYIFNRHLPHISCGISLDLH 121
+ + + + + + + + G S +
Sbjct: 80 GA----------DEPQRLQFPLPTAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVV 129
Query: 122 STIPIGSGFGSSSAIISALSLALSSITHQPFCNKEKLIAETGYIERLQHGK-TGIIDSTT 180
S++P+G G SS+++ A L + E G GI+D
Sbjct: 130 SSVPLGGGLSSSASLEVATYTFLQQLCPDSGT-IAARAQVCQQAEHSFAGMPCGIMDQFI 188
Query: 181 IVMGG---IIYIN 190
+MG + I+
Sbjct: 189 SLMGQKGHALLID 201
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 163
Score = 42.4 bits (99), Expect = 5e-05
Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 93 VLTHPNDLILYIFNRHLPH---ISCGISLDLHSTIPIGSGFGSSSAIISALSLALSSITH 149
+ T P+ + I + + I G+ + + + GSG GSS+A + + A++ +
Sbjct: 51 IPTDPDKNVAGIVAKKMIDDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFK 110
Query: 150 QPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYI---NPPQIIK 196
+K KL+ Y E G + + GG + P +++
Sbjct: 111 LNL-DKLKLVDYASYGELASSGAKHADNVAPAIFGGFTMVTNYEPLEVLH 159
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 169
Score = 41.5 bits (97), Expect = 9e-05
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 23/146 (15%)
Query: 207 INTGMPESSTGECVSFVEQHFSQS------------SIWSEFNAVTNEMMENIQKKDAEK 254
NT +P ST V+ V + +I E V EM +
Sbjct: 10 TNTKVP-RSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLV 68
Query: 255 TYKSVRVNQSLLESIGVVPETVGKFIRCIENNGGSAKIAGAGSIRGEKAGLVLVGGYNPE 314
+ + +NQ L ++GV ++ + + +G +K+ GAG G G+ L+
Sbjct: 69 LEELMDMNQHHLNALGVGHASLDQLCQVTAAHGLHSKLTGAG---GGGCGITLLKPGLER 125
Query: 315 KLS-------SLYGYTCYKIKEDKNG 333
+ G+ C++ G
Sbjct: 126 AKVEAAKQALTGCGFDCWETSIGAPG 151
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 32.6 bits (74), Expect = 0.049
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 4/57 (7%)
Query: 104 IFNRHLPHISCGISLDLH----STIPIGSGFGSSSAIISALSLALSSITHQPFCNKE 156
+ LH + P +G SS+A +AL A++ + P E
Sbjct: 86 EMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSE 142
>d1n7oa3 b.30.5.2 (A:541-814) Hyaluronate lyase {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 274
Score = 27.6 bits (61), Expect = 1.5
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 184 GGIIYI---NPPQIIKNETLVGEWWAINTGMP-ESSTGECVSFVEQH 226
I Y + G W IN G + E ++ + H
Sbjct: 200 KNIGYFFFKKSSISMSKALQKGAWKDINEGQSDKEVENEFLTISQAH 246
>d1rwha3 b.30.5.2 (A:373-644) Chondroitinase AC {Arthrobacter
aurescens [TaxId: 43663]}
Length = 272
Score = 26.4 bits (58), Expect = 3.2
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 4/85 (4%)
Query: 143 ALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTIVMGGIIYINPPQIIKNETLVG 202
L ++ + G +E L G+ ++ G + + P + ET G
Sbjct: 162 NLHQGSNTLTTAAGTIAGTAGTVEVLGDGRWVHLEGFG---GYAMLDDSPLHVLRETRSG 218
Query: 203 EWWAINT-GMPESSTGECVSFVEQH 226
W +N G + H
Sbjct: 219 SWSGVNINGSATVQQRNFATLYVNH 243
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 25.8 bits (56), Expect = 5.0
Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 202 GEWWAINTGMPESSTGECVSFVEQHFSQSSIWSEFNAVTNEMMENIQKKDAEKTYKSV-- 259
G+ G + + + SS + + + + +D++K ++
Sbjct: 502 GDVTYDVRGFLDKNKDTLFGDLISSMQSSS-----DPLVQGLFPPTRPEDSKKRPETAGS 556
Query: 260 RVNQSLLESIGVVPETVGKFIRCIENN 286
+ ++ I + ++RCI++N
Sbjct: 557 QFRNAMNALITTLLACSPHYVRCIKSN 583
>d1x1ia3 b.30.5.2 (A:387-659) Xanthan lyase {Bacillus sp. gl1
[TaxId: 84635]}
Length = 273
Score = 25.6 bits (56), Expect = 5.6
Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 7/98 (7%)
Query: 126 IGSGFGSSS--AIISAL--SLALSSITHQPFCNKEKLIAETGYIERLQHGKTGIIDSTTI 181
+GSG S++ I + + + + N L G + L + T
Sbjct: 135 LGSGISSTAGIPIETVVDNRKLNGAGDNAWTANGAALSTGLGVAQTLTGVNWVHLAGNTA 194
Query: 182 VMGGIIYI---NPPQIIKNETLVGEWWAINTGMPESST 216
I Y K E G W IN ST
Sbjct: 195 DGSDIGYYFPGGATLQTKREARTGTWKQINNRPATPST 232
>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 115
Score = 25.8 bits (56), Expect = 5.6
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 171 GKTGI--IDSTTIVMGGIIYINPPQIIKNETLVGEWWAINTGMPESSTGECVSFVEQHFS 228
+ + I + IV G I+ + + + + + + +S V +H
Sbjct: 9 DRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTE 68
Query: 229 QSSIWSEFNAVTNEMM 244
N M+
Sbjct: 69 PVPDPRAVNQDKKNML 84
>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE
{Escherichia coli [TaxId: 562]}
Length = 170
Score = 25.7 bits (55), Expect = 6.1
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 24/147 (16%)
Query: 126 IGSGFGSSSAIISALSLALSSITHQPFCNKE-----KLIAETGYIERLQHGK------TG 174
IG+G G+S ++ L ++T KL A TG I+ L +
Sbjct: 24 IGAG-GASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDL 82
Query: 175 IIDSTTIVMGGIIYINPPQIIKNETLVGEW-----------WAINTGMPESSTGECVSFV 223
II++T+ + G I P +I + W G ++ G + V
Sbjct: 83 IINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGM-LV 141
Query: 224 EQHFSQSSIWSEFNAVTNEMMENIQKK 250
Q +W +++ +Q++
Sbjct: 142 AQAAHAFLLWHGVLPDVEPVIKQLQEE 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.386
Gapped
Lambda K H
0.267 0.0596 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,223,526
Number of extensions: 55696
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 16
Length of query: 337
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 251
Effective length of database: 1,226,816
Effective search space: 307930816
Effective search space used: 307930816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)