HHsearch alignment for GI: 254781019 and conserved domain: COG3425
>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].
Probab=100.00 E-value=0 Score=656.46 Aligned_cols=375 Identities=33% Similarity=0.479 Sum_probs=354.8
Q ss_pred CCCEEEEEEEECCCEEECHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHH--CCHHHCCEEEEEC
Q ss_conf 96206688873489045599999870999879763038324665599859999999999999972--7957868999945
Q gi|254781019|r 1 MAIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALPIMQN--QDKNLIDTLFFAT 78 (396)
Q Consensus 1 M~vGI~~i~~y~P~~~v~~~~l~~~~g~~~~k~~~~lGi~~r~v~~~~Ed~~tmA~~Aa~~~L~~--~~~~~Id~li~~T 78 (396)
T Consensus 1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~~~D~~~Ig~v~vgT 80 (377)
T COG3425 1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRADIDPSKIGAVIVGS 80 (377)
T ss_pred CCCCCCEEEEECCCEEEEHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCEEEEEC
T ss_conf 95551238885662386099997632888377653004234467997420899999999998751388988966699953
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEE
Q ss_conf 78875460058888632026877358984142035888998789999739997699950332014588875334783024
Q gi|254781019|r 79 ESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAV 158 (396)
Q Consensus 79 ~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~i~sg~~~~aLVV~sD~~~~~~~~~~~~t~GaGA~ 158 (396)
T Consensus 81 ES~~d~~K~~at~v~~~lg~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~~~~LvI~sD~a~~~~~~~~E~t~GAGav 160 (377)
T COG3425 81 ESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGWVESGMISYGLVIGADTAQYAPGDALEYTAGAGAV 160 (377)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCCCCCCCCCCEE
T ss_conf 77765444058999998389975120567878998899999999999728755417996311035888656766778608
Q ss_pred EEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCH
Q ss_conf 68842687630353100015678651127588754235660169899999999999999962988211012331145405
Q gi|254781019|r 159 AILISSQTSILEIEDITGIYTNDCMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTR 238 (396)
Q Consensus 159 Allv~~~~~~~~~~~~~~~~~~~~~df~rp~~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k 238 (396)
T Consensus 161 A~lIg~n~~~~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~~dfdy~vfH~P~~k 240 (377)
T COG3425 161 AFLIGKNPPIVAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSPDDFDYIVFHQPNGK 240 (377)
T ss_pred EEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEECCCCCC
T ss_conf 99980698727872475677457776146689846640763558999999999999999983898455075983179872
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 78888864110245441001345554333444532385432338999999997157436988899984079830377877
Q gi|254781019|r 239 MAEKAHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCVAEFFSG 318 (396)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G~rIll~syGsG~~a~~f~~ 318 (396)
T Consensus 241 ~~~ka~k~l~~~----------~e~v~~~l~~~~~vGN~YtgS~~L~Las~Ld~a~--~~G~rIl~~SYGSGa~s~~fs~ 308 (377)
T COG3425 241 FPKKAAKSLGFK----------EEQVKPGLVYPQRIGNTYTGSLLLGLASLLDNAK--LPGDRILLFSYGSGAGSEAFSI 308 (377)
T ss_pred HHHHHHHHHCCC----------HHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEEEECCCCCEEEEEE
T ss_conf 489999985734----------7662843011665275111069999999985267--8888799996078852567888
Q ss_pred EEECCHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEE
Q ss_conf 8602268765203878897427223899999998630688887631666788866983565538998861
Q gi|254781019|r 319 IVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVEGNCTIPHTTTGPFRLATIQNHKRIYETT 388 (396)
Q Consensus 319 ~v~~~~~~~~~~~~~~~~L~~r~~l~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~R~Y~~~ 388 (396)
T Consensus 309 ~v~~~~~~~~~~~~~~~~l~~R~~ls~~dYe~~~~~~~~~~~~~~~~~-~~~~~~~l~~i~~~~R~y~~~ 377 (377)
T COG3425 309 TVTDGIEERRKKLAPTVLLEQRNRLSYIDYELYFKRRKKIRLGKDNEF-YDSGDYYLEEIDDHFRRYRYV 377 (377)
T ss_pred EECCCHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEECCCCCEEEEEC
T ss_conf 961608877650154778876503899999999851343333334455-567746976216772567509