HHsearch alignment for GI: 254781019 and conserved domain: PRK12404
>PRK12404 stage V sporulation protein AD; Provisional.
Probab=97.89 E-value=0.002 Score=40.25 Aligned_cols=235 Identities=12% Similarity=0.079 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999997279--5786899994578875460058888632026877358984142035888998789999739
Q gi|254781019|r 51 IVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKS 128 (396)
Q Consensus 51 ~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~i~sg 128 (396)
T Consensus 54 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLln---Q~i~ssf~ar~l~i----Pf~GlyGACST~~E~L~laa~~vd~g 126 (334)
T PRK12404 54 HKKLFEEACSRATEKAKLRKDDIQFVLAGDLIN---QITPTSFAARTLGT----PYLGLFGACSTSMEGLALGASIVNAK 126 (334)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHCEEEEECHHHH---HHHHHHHHHHHCCC----CEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999987499978864896122443---25787788986499----80111356677899999999998466
Q ss_pred CCCEEEEEECCCCC---CCCCCCCCC------C-----CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf 99769995033201---458887533------4-----783024688426876303531000156786511275887542
Q gi|254781019|r 129 PERKVLIVASDVAR---YDLGSSGEP------T-----QGCGAVAILISSQTSILEIEDITGIYTNDCMDFWRPNYRRTA 194 (396)
Q Consensus 129 ~~~~aLVV~sD~~~---~~~~~~~~~------t-----~GaGA~Allv~~~~~~~~~~~~~~~~~~~~~df~rp~~~~~~ 194 (396)
T Consensus 127 ~A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~--il~~~~~~p~It~~Ti---GkVvD~Gi---~D~~ 198 (334)
T PRK12404 127 GAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAA--ILSKTGHGPRVTSATI---GRVVDMGL---TDPF 198 (334)
T ss_pred CHHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEE--EEECCCCCCEEEEEEE---EEEEECCC---CCCC
T ss_conf 54350232044520366542582211677998662788761899--9943899977989877---88876588---8843
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHH--------HHHHHHHH
Q ss_conf 3566016989999999999999996298821101233114540578888864110245441001--------34555433
Q gi|254781019|r 195 LVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEKAHIRLSKIVHQNLSVA--------EIEKAIGI 266 (396)
Q Consensus 195 ~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k~~~~~~~~l~~~~~~~~~~~--------~~e~~~~~ 266 (396)
T Consensus 199 nM-G----aAMAPAA~dTI~~hf~D~g~~p~dYDlI~TG-DLG~vG~~i~~~Ll~~~g~~i~~~~~~DCG~~Iy~~~-Q~ 271 (334)
T PRK12404 199 NM-G----GAMAPAAVDTIEAHLRDRQIDASYYDLIVTG-DLGHVGREIAYDLLHKHGTKVTSEQFQDCGLLIYREG-QP 271 (334)
T ss_pred CC-H----HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CC
T ss_conf 02-5----5554789999999999709992344579966-4388789999999998198887455376674634689-87
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf 3444532385432338999999997157436988899984079830
Q gi|254781019|r 267 TTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCV 312 (396)
Q Consensus 267 ~~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G~rIll~syGsG~~ 312 (396)
T Consensus 272 v-----~aGGSGcgCSA~V~~g~il~~m~~g~~krvL~VaTGALlS 312 (334)
T PRK12404 272 V-----IAGASGPGCSATVVYGHLLNRMKRGELKKILVVATGALLS 312 (334)
T ss_pred C-----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCC
T ss_conf 5-----6887653368999999999999648730899997503138