HHsearch alignment for GI: 254781019 and conserved domain: PRK12404

>PRK12404 stage V sporulation protein AD; Provisional.
Probab=97.89  E-value=0.002  Score=40.25  Aligned_cols=235  Identities=12%  Similarity=0.079  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999997279--5786899994578875460058888632026877358984142035888998789999739
Q gi|254781019|r   51 IVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACALVAKS  128 (396)
Q Consensus        51 ~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~i~sg  128 (396)
T Consensus        54 E~~m~~~A~~~al~Ka~l~~~dId~~~aGDLln---Q~i~ssf~ar~l~i----Pf~GlyGACST~~E~L~laa~~vd~g  126 (334)
T PRK12404         54 HKKLFEEACSRATEKAKLRKDDIQFVLAGDLIN---QITPTSFAARTLGT----PYLGLFGACSTSMEGLALGASIVNAK  126 (334)
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCEEEEECHHHH---HHHHHHHHHHHCCC----CEEEHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             999999999999987499978864896122443---25787788986499----80111356677899999999998466


Q ss_pred             CCCEEEEEECCCCC---CCCCCCCCC------C-----CCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCE
Q ss_conf             99769995033201---458887533------4-----783024688426876303531000156786511275887542
Q gi|254781019|r  129 PERKVLIVASDVAR---YDLGSSGEP------T-----QGCGAVAILISSQTSILEIEDITGIYTNDCMDFWRPNYRRTA  194 (396)
Q Consensus       129 ~~~~aLVV~sD~~~---~~~~~~~~~------t-----~GaGA~Allv~~~~~~~~~~~~~~~~~~~~~df~rp~~~~~~  194 (396)
T Consensus       127 ~A~~vla~tSSH~~tAErQFR~P~EyG~QrpptAqWTVTGaGa~--il~~~~~~p~It~~Ti---GkVvD~Gi---~D~~  198 (334)
T PRK12404        127 GAKYLLTGASSHNTAVEKQFRYPTEYGGQKPPTAQWTVTGAGAA--ILSKTGHGPRVTSATI---GRVVDMGL---TDPF  198 (334)
T ss_pred             CHHHEEEEECCCCHHHHHHCCCCHHCCCCCCCCCCEEEECEEEE--EEECCCCCCEEEEEEE---EEEEECCC---CCCC
T ss_conf             54350232044520366542582211677998662788761899--9943899977989877---88876588---8843


Q ss_pred             EECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHH--------HHHHHHHH
Q ss_conf             3566016989999999999999996298821101233114540578888864110245441001--------34555433
Q gi|254781019|r  195 LVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEKAHIRLSKIVHQNLSVA--------EIEKAIGI  266 (396)
Q Consensus       195 ~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k~~~~~~~~l~~~~~~~~~~~--------~~e~~~~~  266 (396)
T Consensus       199 nM-G----aAMAPAA~dTI~~hf~D~g~~p~dYDlI~TG-DLG~vG~~i~~~Ll~~~g~~i~~~~~~DCG~~Iy~~~-Q~  271 (334)
T PRK12404        199 NM-G----GAMAPAAVDTIEAHLRDRQIDASYYDLIVTG-DLGHVGREIAYDLLHKHGTKVTSEQFQDCGLLIYREG-QP  271 (334)
T ss_pred             CC-H----HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEC-CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCC-CC
T ss_conf             02-5----5554789999999999709992344579966-4388789999999998198887455376674634689-87


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCC
Q ss_conf             3444532385432338999999997157436988899984079830
Q gi|254781019|r  267 TTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCV  312 (396)
Q Consensus       267 ~~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G~rIll~syGsG~~  312 (396)
T Consensus       272 v-----~aGGSGcgCSA~V~~g~il~~m~~g~~krvL~VaTGALlS  312 (334)
T PRK12404        272 V-----IAGASGPGCSATVVYGHLLNRMKRGELKKILVVATGALLS  312 (334)
T ss_pred             C-----CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCC
T ss_conf             5-----6887653368999999999999648730899997503138