HHsearch alignment for GI: 254781019 and conserved domain: TIGR02845

>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=98.68  E-value=1.1e-06  Score=60.46  Aligned_cols=179  Identities=21%  Similarity=0.185  Sum_probs=115.8

Q ss_pred             CCCHHHHH-----HHHHHHHHHHCC--HH--HCCEEEEECCCCCCCCHH--HHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf             85999999-----999999997279--57--868999945788754600--58888632026877358984142035888
Q gi|254781019|r   48 DEDIVTMA-----AAAALPIMQNQD--KN--LIDTLFFATESSVDQSKS--AAIWLHKLLGLNSSCRVVELKQACYSATC  116 (396)
Q Consensus        48 ~Ed~~tmA-----~~Aa~~~L~~~~--~~--~Id~li~~T~t~~~~~~~--~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~  116 (396)
T Consensus        42 ge~SwEkAEr~lm~~Av~~aL~Ka~l~~~PP~vD~~LA-----GDLLNQ~~~anFvAR~L~iP-f---lGLygACsTs~E  112 (331)
T TIGR02845        42 GEDSWEKAERKLMEDAVNLALKKANLKKDPPDVDFFLA-----GDLLNQIITANFVARELGIP-F---LGLYGACSTSME  112 (331)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEH-----HHHHHHHHHHHHHHHHCCCC-C---EECCCHHHHHHH
T ss_conf             72018999999999999998753587127872111201-----03666789998988745888-2---340213578999


Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCC---CCCCCCCCCC-----------CCCCEEEEEECCCCCCCEEEECCCCCCCCC
Q ss_conf             99878999973999769995033201---4588875334-----------783024688426876303531000156786
Q gi|254781019|r  117 ALHMACALVAKSPERKVLIVASDVAR---YDLGSSGEPT-----------QGCGAVAILISSQTSILEIEDITGIYTNDC  182 (396)
Q Consensus       117 AL~~A~~~i~sg~~~~aLVV~sD~~~---~~~~~~~~~t-----------~GaGA~Allv~~~~~~~~~~~~~~~~~~~~  182 (396)
T Consensus       113 ~L~~gA~lv~GGfAd~vLaAtSSHy~taERQFRYPTEyG~Qkp~tAq~TVTGAGA~--~l~~~~~~~~it~aT~GkV~D~  190 (331)
T TIGR02845       113 TLALGAMLVDGGFADRVLAATSSHYATAERQFRYPTEYGVQKPPTAQWTVTGAGAV--LLASTGGGPRITSATIGKVVDL  190 (331)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHEE--EECCCCCCCEEEEEEEEEEEEC
T ss_conf             99999999832002211112111135322102565125611599886125034648--6544789436414530147712


Q ss_pred             CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCC-CHHHHHHHHHHCCH
Q ss_conf             511275887542356601698999999999999999629882110123311454-05788888641102
Q gi|254781019|r  183 MDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPF-TRMAEKAHIRLSKI  250 (396)
Q Consensus       183 ~df~rp~~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~-~k~~~~~~~~l~~~  250 (396)
T Consensus       191 G-~~dP~~-----m-G----~AMAPAAaDTI~~Hf~dtg~~~~DYDLIvT--GDL~rvG~~I~~~LL~e  246 (331)
T TIGR02845       191 G-LTDPLD-----M-G----AAMAPAAADTIEAHFKDTGRSVDDYDLIVT--GDLARVGSEILRKLLKE  246 (331)
T ss_pred             C-CCCCCC-----H-H----HHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCHHHHHHHHHHHHHHH
T ss_conf             3-368641-----1-3----541268999999999870788040136787--33002148999999888