HHsearch alignment for GI: 254781019 and conserved domain: TIGR02845
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=98.68 E-value=1.1e-06 Score=60.46 Aligned_cols=179 Identities=21% Similarity=0.185 Sum_probs=115.8
Q ss_pred CCCHHHHH-----HHHHHHHHHHCC--HH--HCCEEEEECCCCCCCCHH--HHHHHHHHHCCCCCCEEEEECCCHHHHHH
Q ss_conf 85999999-----999999997279--57--868999945788754600--58888632026877358984142035888
Q gi|254781019|r 48 DEDIVTMA-----AAAALPIMQNQD--KN--LIDTLFFATESSVDQSKS--AAIWLHKLLGLNSSCRVVELKQACYSATC 116 (396)
Q Consensus 48 ~Ed~~tmA-----~~Aa~~~L~~~~--~~--~Id~li~~T~t~~~~~~~--~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~ 116 (396)
T Consensus 42 ge~SwEkAEr~lm~~Av~~aL~Ka~l~~~PP~vD~~LA-----GDLLNQ~~~anFvAR~L~iP-f---lGLygACsTs~E 112 (331)
T TIGR02845 42 GEDSWEKAERKLMEDAVNLALKKANLKKDPPDVDFFLA-----GDLLNQIITANFVARELGIP-F---LGLYGACSTSME 112 (331)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEH-----HHHHHHHHHHHHHHHHCCCC-C---EECCCHHHHHHH
T ss_conf 72018999999999999998753587127872111201-----03666789998988745888-2---340213578999
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCC---CCCCCCCCCC-----------CCCCEEEEEECCCCCCCEEEECCCCCCCCC
Q ss_conf 99878999973999769995033201---4588875334-----------783024688426876303531000156786
Q gi|254781019|r 117 ALHMACALVAKSPERKVLIVASDVAR---YDLGSSGEPT-----------QGCGAVAILISSQTSILEIEDITGIYTNDC 182 (396)
Q Consensus 117 AL~~A~~~i~sg~~~~aLVV~sD~~~---~~~~~~~~~t-----------~GaGA~Allv~~~~~~~~~~~~~~~~~~~~ 182 (396)
T Consensus 113 ~L~~gA~lv~GGfAd~vLaAtSSHy~taERQFRYPTEyG~Qkp~tAq~TVTGAGA~--~l~~~~~~~~it~aT~GkV~D~ 190 (331)
T TIGR02845 113 TLALGAMLVDGGFADRVLAATSSHYATAERQFRYPTEYGVQKPPTAQWTVTGAGAV--LLASTGGGPRITSATIGKVVDL 190 (331)
T ss_pred HHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHEE--EECCCCCCCEEEEEEEEEEEEC
T ss_conf 99999999832002211112111135322102565125611599886125034648--6544789436414530147712
Q ss_pred CCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCC-CHHHHHHHHHHCCH
Q ss_conf 511275887542356601698999999999999999629882110123311454-05788888641102
Q gi|254781019|r 183 MDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPF-TRMAEKAHIRLSKI 250 (396)
Q Consensus 183 ~df~rp~~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~-~k~~~~~~~~l~~~ 250 (396)
T Consensus 191 G-~~dP~~-----m-G----~AMAPAAaDTI~~Hf~dtg~~~~DYDLIvT--GDL~rvG~~I~~~LL~e 246 (331)
T TIGR02845 191 G-LTDPLD-----M-G----AAMAPAAADTIEAHFKDTGRSVDDYDLIVT--GDLARVGSEILRKLLKE 246 (331)
T ss_pred C-CCCCCC-----H-H----HHHHHHHHHHHHHHHHHCCCCCCEEEEEEE--CCHHHHHHHHHHHHHHH
T ss_conf 3-368641-----1-3----541268999999999870788040136787--33002148999999888