HHsearch alignment for GI: 254781019 and conserved domain: cd00826
>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.29 E-value=9.5e-10 Score=79.59 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 985999999999999997279--578689999457887546005888863202687735898414203588899878999
Q gi|254781019|r 47 PDEDIVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACAL 124 (396)
Q Consensus 47 ~~Ed~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~ 124 (396)
T Consensus 19 ~~~~a~eL~~~ai~~al~~agi~~~~Id~vi~G~~~~~g~g~n~ar~~~l~ag~~~~vp~~tV~~~CaSG~~Ai~~A~~~ 98 (393)
T cd00826 19 ANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQL 98 (393)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 78999999999999999982969899898999925875555419999999759998997688768478999999999999
Q ss_pred HHCCCCCEEEEEECCCCCCC
Q ss_conf 97399976999503320145
Q gi|254781019|r 125 VAKSPERKVLIVASDVARYD 144 (396)
Q Consensus 125 i~sg~~~~aLVV~sD~~~~~ 144 (396)
T Consensus 99 I~sG~~dvvlagGvEsms~~ 118 (393)
T cd00826 99 IAGGDANCILAGGFEKMETS 118 (393)
T ss_pred HHCCCCCEEEEEEEEECCCC
T ss_conf 97699998999505506767