HHsearch alignment for GI: 254781019 and conserved domain: cd00826

>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=99.29  E-value=9.5e-10  Score=79.59  Aligned_cols=98  Identities=12%  Similarity=0.098  Sum_probs=79.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             985999999999999997279--578689999457887546005888863202687735898414203588899878999
Q gi|254781019|r   47 PDEDIVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACAL  124 (396)
Q Consensus        47 ~~Ed~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~  124 (396)
T Consensus        19 ~~~~a~eL~~~ai~~al~~agi~~~~Id~vi~G~~~~~g~g~n~ar~~~l~ag~~~~vp~~tV~~~CaSG~~Ai~~A~~~   98 (393)
T cd00826          19 ANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQL   98 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             78999999999999999982969899898999925875555419999999759998997688768478999999999999


Q ss_pred             HHCCCCCEEEEEECCCCCCC
Q ss_conf             97399976999503320145
Q gi|254781019|r  125 VAKSPERKVLIVASDVARYD  144 (396)
Q Consensus       125 i~sg~~~~aLVV~sD~~~~~  144 (396)
T Consensus        99 I~sG~~dvvlagGvEsms~~  118 (393)
T cd00826          99 IAGGDANCILAGGFEKMETS  118 (393)
T ss_pred             HHCCCCCEEEEEEEEECCCC
T ss_conf             97699998999505506767