HHsearch alignment for GI: 254781019 and conserved domain: cd00829
>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.
Probab=99.47 E-value=3.8e-11 Score=88.30 Aligned_cols=191 Identities=19% Similarity=0.148 Sum_probs=127.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 985999999999999997279--578689999457887546005888863202687735898414203588899878999
Q gi|254781019|r 47 PDEDIVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHMACAL 124 (396)
Q Consensus 47 ~~Ed~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~aC~g~~~AL~~A~~~ 124 (396)
T Consensus 12 ~~~s~~eL~~~a~~~Al~dagi~~~~ID~v~~g~~~~~~~~~~~~~~~a~~~G~~~-~~~~~v~~~c~Sg~~ai~~Aa~~ 90 (375)
T cd00829 12 SDRSPLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLG-KPATRVEAAGASGSAAVRAAAAA 90 (375)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCHHHHCEEEEEECCCCCCCCHHHHHHHHHCCCCC-CCEEEECCCCHHHHHHHHHHHHH
T ss_conf 99699999999999999983919899499999912875534769999999829999-86588689886999999999999
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCC-------------------------------------------------------
Q ss_conf 9739997699950332014588875-------------------------------------------------------
Q gi|254781019|r 125 VAKSPERKVLIVASDVARYDLGSSG------------------------------------------------------- 149 (396)
Q Consensus 125 i~sg~~~~aLVV~sD~~~~~~~~~~------------------------------------------------------- 149 (396)
T Consensus 91 I~~G~~~~vl~~G~Es~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~a~~~~~~~g~~re~~~~~a~~~~~~A~ 170 (375)
T cd00829 91 IASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLTPPALYALAARRYMHRYGTTREDLAKVAVKNHRNAA 170 (375)
T ss_pred HHCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 97799998999987516778765554445677203332024466578999999999999979799999999999998644
Q ss_pred -------------------C----C-------CCCCCEEEEEECCCCCCCEE--EE--CCCCCCCCCCCCCCCCCCCCEE
Q ss_conf -------------------3----3-------47830246884268763035--31--0001567865112758875423
Q gi|254781019|r 150 -------------------E----P-------TQGCGAVAILISSQTSILEI--ED--ITGIYTNDCMDFWRPNYRRTAL 195 (396)
Q Consensus 150 -------------------~----~-------t~GaGA~Allv~~~~~~~~~--~~--~~~~~~~~~~df~rp~~~~~~~ 195 (396)
T Consensus 171 ~np~A~~~~~~t~e~~~~~~~i~~Pl~~~~~~~~~DGAaa~vl~s~~~A~~~~~~p~~i~g~~--~~~~~~~~~~~~~-- 246 (375)
T cd00829 171 RNPYAQFRKPITVEDVLNSRMIADPLRLLDCCPVSDGAAAVVLASEERARELTDRPVWILGVG--AASDTPSLSERDD-- 246 (375)
T ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCHHHCCCCCCCCEEEEEECHHHHHHCCCCCEEEEEEE--EEECCCCCCCCCC--
T ss_conf 286120258858999823476446621431576666405899963999987699937999999--9952654356785--
Q ss_pred ECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHHHHHHHHHHCC
Q ss_conf 566016989999999999999996298821101233114540578888864110
Q gi|254781019|r 196 VDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMAEKAHIRLSK 249 (396)
Q Consensus 196 ~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k~~~~~~~~l~~ 249 (396)
T Consensus 247 -------~~~~~~~~~A~~~al~~aGl~~~DiD~~Ei~eaFa~~~l~~~e~lGl 293 (375)
T cd00829 247 -------FLSLDAARLAARRAYKMAGITPDDIDVAELYDCFTIAELLALEDLGF 293 (375)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHHHHHHHCCC
T ss_conf -------22232599999999998199978765642015766999999998099