HHsearch alignment for GI: 254781019 and conserved domain: cd00831
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=100.00 E-value=0 Score=332.91 Aligned_cols=301 Identities=20% Similarity=0.234 Sum_probs=231.2
Q ss_pred CEEEEEEEECCCEEECHHHHHHHCCCC------------HHHHHHHCCCCEEEECCCC----------------------
Q ss_conf 206688873489045599999870999------------8797630383246655998----------------------
Q gi|254781019|r 3 IGIEDISFYTTNQYLDLSVIAEKYRLD------------VAKFYVGIGQERMSVLNPD---------------------- 48 (396)
Q Consensus 3 vGI~~i~~y~P~~~v~~~~l~~~~g~~------------~~k~~~~lGi~~r~v~~~~---------------------- 48 (396)
T Consensus 2 A~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tgI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 81 (361)
T cd00831 2 ATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDIA 81 (361)
T ss_pred EEEEEEEEECCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHH
T ss_conf 19999887779926759999999987443334356789999999726986155552661220245655588878887779
Q ss_pred -CCHHHHHHHHHHHHHHHCC--HHHCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC-CHHHHHHHHHHHHHH
Q ss_conf -5999999999999997279--578689999457887546005888863202687735898414-203588899878999
Q gi|254781019|r 49 -EDIVTMAAAAALPIMQNQD--KNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQ-ACYSATCALHMACAL 124 (396)
Q Consensus 49 -Ed~~tmA~~Aa~~~L~~~~--~~~Id~li~~T~t~~~~~~~~a~~v~~~Lgl~~~~~~~Di~~-aC~g~~~AL~~A~~~ 124 (396)
T Consensus 82 ~~~~~~la~~Aa~~AL~~ag~~~~dId~lI~~Tst-~~~~Ps~a~~v~~~LGl~~~~~~~dl~~~gCsg~~~aL~~A~~~ 160 (361)
T cd00831 82 LEEARELAEEAARGALDEAGLRPSDIDHLVVNTST-GNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAKDL 160 (361)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCC-CCCCCCHHHHHHHHHCCCCCHHEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98999999999999999819898999999998659-99989769999997389987003556467556899999999999
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCC-------CCCCCCEEEEEECCCCCCCEEE-------ECCCCCCCCCCC--CCCC
Q ss_conf 97399976999503320145888753-------3478302468842687630353-------100015678651--1275
Q gi|254781019|r 125 VAKSPERKVLIVASDVARYDLGSSGE-------PTQGCGAVAILISSQTSILEIE-------DITGIYTNDCMD--FWRP 188 (396)
Q Consensus 125 i~sg~~~~aLVV~sD~~~~~~~~~~~-------~t~GaGA~Allv~~~~~~~~~~-------~~~~~~~~~~~d--f~rp 188 (396)
T Consensus 161 i~~g~~~~vLVV~~E~~S~~~~~~d~~~~~v~~~LFGDGA~A~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (361)
T cd00831 161 LEANPGARVLVVSTELCSLWYRGPDHRSMLVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSEDAMGWHL 240 (361)
T ss_pred HHHCCCCEEEEEEEEECCEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 98299976999961211202068875777554200047725899842676665666526883777612468887666650
Q ss_pred CCCCCEEECCHHHHHHHHHHHHHHHHHHHHHC--CCCHHHCCEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 88754235660169899999999999999962--9882110123311454057888886411024544100134555433
Q gi|254781019|r 189 NYRRTALVDGKYSTKIYLQSLEAVWHDYQKNK--GHDFNDFQYFCYHQPFTRMAEKAHIRLSKIVHQNLSVAEIEKAIGI 266 (396)
Q Consensus 189 ~~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~--g~~~~did~~v~H~p~~k~~~~~~~~l~~~~~~~~~~~~~e~~~~~ 266 (396)
T Consensus 241 ~~~g~~~~l~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~di~~~~~Hq~~~~Ii~~v~~~Lgl~~~----------~~~~ 310 (361)
T cd00831 241 GEEGLTFVLSRDVPRLVEKNLERVLRKLLARLGIGLFKLAFDHWCVHPGGRAVLDAVEKALGLSPE----------DLEA 310 (361)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCEEEECCCCHHHHHHHHHHCCCCHH----------HHHH
T ss_conf 577537850636999999999999999999825899967725588787868999999998298968----------8325
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEE
Q ss_conf 3444532385432338999999997157436988899984079830377
Q gi|254781019|r 267 TTLYNRLIGNSYTASLYIALISLLDHSSENLAGKRVGFFSYGSGCVAEF 315 (396)
Q Consensus 267 ~~~~~~~~GN~~SASi~l~L~slLe~~~~~~~G~rIll~syGsG~~a~~ 315 (396)
T Consensus 311 s~~~l~~~GNtsSaSip~~L~~~~~-~~~~~~Gd~vl~~afG~Glt~~~ 358 (361)
T cd00831 311 SRMVLRRYGNMSSSSVLYVLAYMEA-KGRVKRGDRGLLIAFGPGFTCES 358 (361)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEEEECCHHEEEE
T ss_conf 7878986385398899999999997-39999999899999810405531