HHsearch alignment for GI: 254781019 and conserved domain: cd00833
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=98.78 E-value=1.1e-06 Score=60.54 Aligned_cols=218 Identities=16% Similarity=0.172 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHCC--HHHCC----EEEEECCCCCCC-------------------CHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 999999999997279--57868----999945788754-------------------60058888632026877358984
Q gi|254781019|r 53 TMAAAAALPIMQNQD--KNLID----TLFFATESSVDQ-------------------SKSAAIWLHKLLGLNSSCRVVEL 107 (396)
Q Consensus 53 tmA~~Aa~~~L~~~~--~~~Id----~li~~T~t~~~~-------------------~~~~a~~v~~~Lgl~~~~~~~Di 107 (396)
T Consensus 89 rl~L~~a~eAl~dAG~~~~~~~~~r~GV~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~~~~Gp--~~~v 166 (421)
T cd00833 89 RLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLRGP--SLTV 166 (421)
T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCC
T ss_conf 99999999999752898346488634999666666478897427565785301354311799999999689996--0033
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--------CCC--CC-----------CCCCCCCCEEEEEECCCC
Q ss_conf 142035888998789999739997699950332014--------588--87-----------533478302468842687
Q gi|254781019|r 108 KQACYSATCALHMACALVAKSPERKVLIVASDVARY--------DLG--SS-----------GEPTQGCGAVAILISSQT 166 (396)
Q Consensus 108 ~~aC~g~~~AL~~A~~~i~sg~~~~aLVV~sD~~~~--------~~~--~~-----------~~~t~GaGA~Allv~~~~ 166 (396)
T Consensus 167 ~tACaSsl~Ai~~A~~~i~~G~~d~ai~Gg~~~~~~~~~~~~~~~~~~ls~~~~~rpFD~~~~G~v~gEGa~~lvLe~~~ 246 (421)
T cd00833 167 DTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLSPDGRCRPFDADADGYVRGEGVGVVVLKRLS 246 (421)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHH
T ss_conf 53627999999999999857994354412000315868999986357868999856788899986555751354368789
Q ss_pred -------CCCEEEECCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCHH
Q ss_conf -------6303531000156786511275887542356601698999999999999999629882110123311454057
Q gi|254781019|r 167 -------SILEIEDITGIYTNDCMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRM 239 (396)
Q Consensus 167 -------~~~~~~~~~~~~~~~~~df~rp~~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k~ 239 (396)
T Consensus 247 ~A~~~g~~I~a~i~G~g~~~----dg~~~-~~~~P--~--------~~~~~~~~~~al~~agi~~~~i~yieaHgtgT~~ 311 (421)
T cd00833 247 DALRDGDRIYAVIRGSAVNQ----DGRTK-GITAP--S--------GEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPL 311 (421)
T ss_pred HHHHCCCCEEEEEEEEEECC----CCCCC-CCCCC--C--------HHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
T ss_conf 99876994799998999806----89777-88887--5--------6689999999999729994412089974476866
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 888886411024544100134555433344453238543233899999999
Q gi|254781019|r 240 AEKAHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLL 290 (396)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~GN~~SASi~l~L~slL 290 (396)
T Consensus 312 gD~~E~~ai~~~f~~~~--~~~~~~-~v~S~Ks~~GH~~~AaG~~~~i~~~ 359 (421)
T cd00833 312 GDPIEVEALAKVFGGSR--SADQPL-LIGSVKSNIGHLEAAAGLAGLIKVV 359 (421)
T ss_pred CCHHHHHHHHHHHCCCC--CCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 69999999999961257--777863-0235434534335767999999999