HHsearch alignment for GI: 254781019 and conserved domain: pfam08540

>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=100.00  E-value=0  Score=355.78  Aligned_cols=218  Identities=30%  Similarity=0.483  Sum_probs=190.1

Q ss_pred             EEECCCCCCCCCCCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHCCEEEECCCCCHHH
Q ss_conf             5310001567865112758-8754235660169899999999999999962---------98821101233114540578
Q gi|254781019|r  171 IEDITGIYTNDCMDFWRPN-YRRTALVDGKYSTKIYLQSLEAVWHDYQKNK---------GHDFNDFQYFCYHQPFTRMA  240 (396)
Q Consensus       171 ~~~~~~~~~~~~~df~rp~-~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~---------g~~~~did~~v~H~p~~k~~  240 (396)
T Consensus         4 e~glrgs~m~h~YDFyKPd~~SEyP~VDGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~Klv   83 (282)
T pfam08540         4 DRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLV   83 (282)
T ss_pred             CCCCCEEEEECCEECCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHH
T ss_conf             68867323001501468898997864472889999999999999999999873002367766376677899857544899


Q ss_pred             HHHHHHHCCHH-------------------------------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             88886411024-------------------------------------54410013455543334445323854323389
Q gi|254781019|r  241 EKAHIRLSKIV-------------------------------------HQNLSVAEIEKAIGITTLYNRLIGNSYTASLY  283 (396)
Q Consensus       241 ~~~~~~l~~~~-------------------------------------~~~~~~~~~e~~~~~~~~~~~~~GN~~SASi~  283 (396)
T Consensus        84 qKs~arl~~nD~~~~~~~~~~~~~~~~l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY  163 (282)
T pfam08540        84 QKSLARLLYNDFLRNPSSDKGNGVYEKLEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLY  163 (282)
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf             99999999876530655201100011110001464454010068999999870898986326187887860750069999


Q ss_pred             HHHHHHHHHCC-CCCCCCEEEEEEECCCCCEEEEEEEEECCHH-------HHHHCCCHHHHHHCCCCCCHHHHHHHHH--
Q ss_conf             99999997157-4369888999840798303778778602268-------7652038788974272238999999986--
Q gi|254781019|r  284 IALISLLDHSS-ENLAGKRVGFFSYGSGCVAEFFSGIVQKNYR-------KKSHQKRHQHIINSRIPISYQVYCDLHQ--  353 (396)
Q Consensus       284 l~L~slLe~~~-~~~~G~rIll~syGsG~~a~~f~~~v~~~~~-------~~~~~~~~~~~L~~r~~l~~~~y~~~~~--  353 (396)
T Consensus       164 ~~L~SLL~~~~~~~L~GkRIg~FSYGSGlaas~FS~~v~~d~~~~~~l~~~i~~~~~l~~rL~~R~~~~Pe~f~~~~~lr  243 (282)
T pfam08540       164 AALASLLSHVSADELAGKRIGMFSYGSGLAASLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETMELR  243 (282)
T ss_pred             HHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             99999984377523489989998516661124675898588676641788999876179998568547978999999999


Q ss_pred             ---HCCCCCCCCCCCCCCCCCCEEEEEEEC-CEEEEEEE
Q ss_conf             ---306888876316667888669835655-38998861
Q gi|254781019|r  354 ---DIIPSVEGNCTIPHTTTGPFRLATIQN-HKRIYETT  388 (396)
Q Consensus       354 ---~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~R~Y~~~  388 (396)
T Consensus       244 e~~~~~~~~~p~~s~~~l~pGtyYL~~VD~~~RR~Y~~k  282 (282)
T pfam08540       244 EQAHHKKNFTPQGSIDSLFPGTYYLTNVDSLYRRSYARK  282 (282)
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCC
T ss_conf             997078998778970227998864011024332021469