HHsearch alignment for GI: 254781019 and conserved domain: pfam08540
>pfam08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal.
Probab=100.00 E-value=0 Score=355.78 Aligned_cols=218 Identities=30% Similarity=0.483 Sum_probs=190.1
Q ss_pred EEECCCCCCCCCCCCCCCC-CCCCEEECCHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHCCEEEECCCCCHHH
Q ss_conf 5310001567865112758-8754235660169899999999999999962---------98821101233114540578
Q gi|254781019|r 171 IEDITGIYTNDCMDFWRPN-YRRTALVDGKYSTKIYLQSLEAVWHDYQKNK---------GHDFNDFQYFCYHQPFTRMA 240 (396)
Q Consensus 171 ~~~~~~~~~~~~~df~rp~-~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~---------g~~~~did~~v~H~p~~k~~ 240 (396)
T Consensus 4 e~glrgs~m~h~YDFyKPd~~SEyP~VDGk~Si~cYl~ALd~cy~~Y~~K~~~~~~~~~~~~~ld~fd~~~FH~Py~Klv 83 (282)
T pfam08540 4 DRGLRGSHMEHAYDFYKPDLTSEYPVVDGKLSLQCYLKALDSCYKNYCKKIEKQTKDGGTKFGLDDFDYVIFHSPYCKLV 83 (282)
T ss_pred CCCCCEEEEECCEECCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCEEEEECCHHHHH
T ss_conf 68867323001501468898997864472889999999999999999999873002367766376677899857544899
Q ss_pred HHHHHHHCCHH-------------------------------------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 88886411024-------------------------------------54410013455543334445323854323389
Q gi|254781019|r 241 EKAHIRLSKIV-------------------------------------HQNLSVAEIEKAIGITTLYNRLIGNSYTASLY 283 (396)
Q Consensus 241 ~~~~~~l~~~~-------------------------------------~~~~~~~~~e~~~~~~~~~~~~~GN~~SASi~ 283 (396)
T Consensus 84 qKs~arl~~nD~~~~~~~~~~~~~~~~l~~~~~~~~e~s~~dk~~ek~~~~~sk~~f~~kv~psl~~~~~vGNmYTaSlY 163 (282)
T pfam08540 84 QKSLARLLYNDFLRNPSSDKGNGVYEKLEALGGLKLEDSYTDRDLEKAFMQLSKPLFKKKTKPSLLLPTQVGNMYTASLY 163 (282)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH
T ss_conf 99999999876530655201100011110001464454010068999999870898986326187887860750069999
Q ss_pred HHHHHHHHHCC-CCCCCCEEEEEEECCCCCEEEEEEEEECCHH-------HHHHCCCHHHHHHCCCCCCHHHHHHHHH--
Q ss_conf 99999997157-4369888999840798303778778602268-------7652038788974272238999999986--
Q gi|254781019|r 284 IALISLLDHSS-ENLAGKRVGFFSYGSGCVAEFFSGIVQKNYR-------KKSHQKRHQHIINSRIPISYQVYCDLHQ-- 353 (396)
Q Consensus 284 l~L~slLe~~~-~~~~G~rIll~syGsG~~a~~f~~~v~~~~~-------~~~~~~~~~~~L~~r~~l~~~~y~~~~~-- 353 (396)
T Consensus 164 ~~L~SLL~~~~~~~L~GkRIg~FSYGSGlaas~FS~~v~~d~~~~~~l~~~i~~~~~l~~rL~~R~~~~Pe~f~~~~~lr 243 (282)
T pfam08540 164 AALASLLSHVSADELAGKRIGMFSYGSGLAASLFSLRVSQDVSPGSILQKLITKVLDLKNKLDSRHCVSPEEFEETMELR 243 (282)
T ss_pred HHHHHHHHCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999984377523489989998516661124675898588676641788999876179998568547978999999999
Q ss_pred ---HCCCCCCCCCCCCCCCCCCEEEEEEEC-CEEEEEEE
Q ss_conf ---306888876316667888669835655-38998861
Q gi|254781019|r 354 ---DIIPSVEGNCTIPHTTTGPFRLATIQN-HKRIYETT 388 (396)
Q Consensus 354 ---~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~R~Y~~~ 388 (396)
T Consensus 244 e~~~~~~~~~p~~s~~~l~pGtyYL~~VD~~~RR~Y~~k 282 (282)
T pfam08540 244 EQAHHKKNFTPQGSIDSLFPGTYYLTNVDSLYRRSYARK 282 (282)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCEECCCCHHHHHCCCCCC
T ss_conf 997078998778970227998864011024332021469