HHsearch alignment for GI: 254781019 and conserved domain: smart00825

>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=98.94  E-value=1.3e-07  Score=66.32  Aligned_cols=216  Identities=16%  Similarity=0.164  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHCC--HHHCC----EEEEECCCCCCCC------------------HH-HHHHHHHHHCCCCCCEEEEE
Q ss_conf             999999999997279--57868----9999457887546------------------00-58888632026877358984
Q gi|254781019|r   53 TMAAAAALPIMQNQD--KNLID----TLFFATESSVDQS------------------KS-AAIWLHKLLGLNSSCRVVEL  107 (396)
Q Consensus        53 tmA~~Aa~~~L~~~~--~~~Id----~li~~T~t~~~~~------------------~~-~a~~v~~~Lgl~~~~~~~Di  107 (396)
T Consensus        89 rl~L~~a~~Al~dAG~~~~~l~~~r~GV~vG~~~~d~~~~~~~~~~~~~~~~~~~~~~s~~a~ris~~~~l~Gp--~~~v  166 (424)
T smart00825       89 RLLLEVAWEALEDAGIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLRGP--SVTV  166 (424)
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC--EEEE
T ss_conf             99999999999973998356588743899975166377776417555785202453176899999998589996--3514


Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-------------CCCCCC--------CCCCCCEEEEEECCC-
Q ss_conf             1420358889987899997399976999503320145-------------888753--------347830246884268-
Q gi|254781019|r  108 KQACYSATCALHMACALVAKSPERKVLIVASDVARYD-------------LGSSGE--------PTQGCGAVAILISSQ-  165 (396)
Q Consensus       108 ~~aC~g~~~AL~~A~~~i~sg~~~~aLVV~sD~~~~~-------------~~~~~~--------~t~GaGA~Allv~~~-  165 (396)
T Consensus       167 dtACsSsl~Al~~A~~~i~~G~~D~alvGg~~~~~~p~~~~~~~~~~~lS~~g~~rpFD~~adG~v~gEGa~~lvLk~l~  246 (424)
T smart00825      167 DTACSSSLVALHLACQSLRSGECDMALAGGVNLILSPDTFVGFSRAGMLSPDGRCKTFDADADGYVRGEGVGVVVLKRLS  246 (424)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHH
T ss_conf             14728999999999999976996330014266734878999986157879999875577889984104765799746599


Q ss_pred             ------CCCCEEEECCCCCCCC-CCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEECCCCCH
Q ss_conf             ------7630353100015678-651127588754235660169899999999999999962988211012331145405
Q gi|254781019|r  166 ------TSILEIEDITGIYTND-CMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTR  238 (396)
Q Consensus       166 ------~~~~~~~~~~~~~~~~-~~df~rp~~~~~~~~dg~~~~~~y~~~~~~a~~~~l~~~g~~~~did~~v~H~p~~k  238 (396)
T Consensus       247 ~A~~~g~~Iya~I~G~~~~~dG~~~~~~~P~----------------~~~~~~~~~~Al~~a~i~p~~I~yieaHgtgt~  310 (424)
T smart00825      247 DALRDGDPILAVIRGSAVNQDGRSNGLTAPS----------------GPAQARLIRQALARAGVDPADVDYVEAHGTGTP  310 (424)
T ss_pred             HHHHCCCCEEEEEECEEEECCCCCCCCCCCC----------------HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC
T ss_conf             9987699179999343782589878778999----------------899999999999982989664687996036687


Q ss_pred             HHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             7888886411024-544100134555433344453238543233899999999
Q gi|254781019|r  239 MAEKAHIRLSKIV-HQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLL  290 (396)
Q Consensus       239 ~~~~~~~~l~~~~-~~~~~~~~~e~~~~~~~~~~~~~GN~~SASi~l~L~slL  290 (396)
T Consensus       311 ~gD~~E~~al~~~f~~~~~---~~~~~~-igS~K~~~GH~~~AaG~~~lik~~  359 (424)
T smart00825      311 LGDPIEAEALAAVFGQGRP---RDGPLL-LGSVKSNIGHLEAAAGVAGLIKVV  359 (424)
T ss_pred             CCCHHHHHHHHHHHCCCCC---CCCCEE-ECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             7799999999999623688---778425-204534423337778999999999