RPSBLAST alignment for GI: 254781019 and conserved domain: TIGR01833

>gnl|CDD|162552 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade. Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 454

 Score =  162 bits (411), Expect = 2e-40
 Identities = 119/387 (30%), Positives = 172/387 (44%), Gaps = 58/387 (14%)

Query: 3   IGIEDISFYTTNQYLDLSVIAEKY-RLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAALP 61
           +GI  +  Y  +QY+D + + EKY  +   K+ +G+GQ +M      EDI ++       
Sbjct: 2   VGILALEIYFPSQYVDQAEL-EKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSK 60

Query: 62  IMQ--NQDKNLIDTLFFATESSVDQSKSAAIWLHKLLG--LNSSCRVVELKQACYSATCA 117
           +M+  N D N I  L   TE+ +D+SKS    L +L     N+    ++   ACY  T A
Sbjct: 61  LMERYNIDYNQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 120

Query: 118 LHMACALVAKSP--ERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDIT 175
           L  A   +  S    R  L+VA D+A Y  G++  PT G GAVA+LI     I+    + 
Sbjct: 121 LFNAINWIESSSWDGRYALVVAGDIAVYAKGNA-RPTGGAGAVAMLIGPNAPIVFERGLR 179

Query: 176 GIYTNDCMDFWRPNY-RRTALVDGKYSTKIYLQSL-----------EAVWHDYQKNKGHD 223
           G +     DF++P+      +VDGK S + YL +L           E  W     ++   
Sbjct: 180 GSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEKQWGKSGGDRKFT 239

Query: 224 FNDFQYFCYHQPFTRMAEKAHIRL---------SKIVHQNLSVAE--------------- 259
            NDF Y  +H P+ ++ +K+  RL         S I        E               
Sbjct: 240 LNDFDYMVFHSPYCKLVQKSLARLLYNDFLRNPSSIDTALYEGLEALSTLKLEDTYFDRD 299

Query: 260 IEKA------------IGITTLYNRLIGNSYTASLYIALISLLDH-SSENLAGKRVGFFS 306
           +EKA               + L    +GN YTASLY  L SLL   S++ LAGKRVG FS
Sbjct: 300 LEKAFMKASKELFDKKTKPSLLVPNQVGNMYTASLYGCLASLLSSKSAQELAGKRVGMFS 359

Query: 307 YGSGCVAEFFSGIVQKNYRKKSHQKRH 333
           YGSG  A  FS  V ++    S   + 
Sbjct: 360 YGSGLAASMFSLRVSQDASPGSALDKL 386