BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781019|ref|YP_003065432.1| hydroxymethylglutaryl-coenzyme
A synthase [Candidatus Liberibacter asiaticus str. psy62]
         (396 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781019|ref|YP_003065432.1| hydroxymethylglutaryl-coenzyme A synthase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 396

 Score =  829 bits (2141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/396 (100%), Positives = 396/396 (100%)

Query: 1   MAIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAAL 60
           MAIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAAL
Sbjct: 1   MAIGIEDISFYTTNQYLDLSVIAEKYRLDVAKFYVGIGQERMSVLNPDEDIVTMAAAAAL 60

Query: 61  PIMQNQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHM 120
           PIMQNQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHM
Sbjct: 61  PIMQNQDKNLIDTLFFATESSVDQSKSAAIWLHKLLGLNSSCRVVELKQACYSATCALHM 120

Query: 121 ACALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTN 180
           ACALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTN
Sbjct: 121 ACALVAKSPERKVLIVASDVARYDLGSSGEPTQGCGAVAILISSQTSILEIEDITGIYTN 180

Query: 181 DCMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMA 240
           DCMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMA
Sbjct: 181 DCMDFWRPNYRRTALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYFCYHQPFTRMA 240

Query: 241 EKAHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGK 300
           EKAHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGK
Sbjct: 241 EKAHIRLSKIVHQNLSVAEIEKAIGITTLYNRLIGNSYTASLYIALISLLDHSSENLAGK 300

Query: 301 RVGFFSYGSGCVAEFFSGIVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVE 360
           RVGFFSYGSGCVAEFFSGIVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVE
Sbjct: 301 RVGFFSYGSGCVAEFFSGIVQKNYRKKSHQKRHQHIINSRIPISYQVYCDLHQDIIPSVE 360

Query: 361 GNCTIPHTTTGPFRLATIQNHKRIYETTNFPDPSCS 396
           GNCTIPHTTTGPFRLATIQNHKRIYETTNFPDPSCS
Sbjct: 361 GNCTIPHTTTGPFRLATIQNHKRIYETTNFPDPSCS 396


>gi|254780741|ref|YP_003065154.1| carboxynorspermidine decarboxylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 367

 Score = 25.4 bits (54), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 72  DTLFFATESSVDQSKSAAIWLHKLLGL 98
           DT+ F T S +++ K  A  LHK +GL
Sbjct: 94  DTIIFNTVSQLNKFKDKAQKLHKKIGL 120


>gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 311

 Score = 24.3 bits (51), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 194 ALVDGKYSTKIYLQSLEAVWHDYQKNKGHDFNDFQYF 230
           A+V+G   T I L  L   WH+   +  +DF+    F
Sbjct: 83  AVVEGLLMTNIALIILYESWHNMSHSPSNDFSIMGLF 119


>gi|254780199|ref|YP_003064612.1| outer membrane lipoprotein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 160

 Score = 23.9 bits (50), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 154 GCGAVAILISSQTSILEIEDITGIYTND 181
            C A+++++ S   + E  DITG + +D
Sbjct: 23  SCSALSVVVDSSELLPEPMDITGYWEDD 50


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 23.5 bits (49), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 162 ISSQTSILEIEDITGIYTNDCMDF 185
           ISS   +L++  IT IY N   DF
Sbjct: 37  ISSSDRVLDLTSITRIYVNQGEDF 60


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,386
Number of Sequences: 1233
Number of extensions: 10022
Number of successful extensions: 19
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 7
length of query: 396
length of database: 328,796
effective HSP length: 76
effective length of query: 320
effective length of database: 235,088
effective search space: 75228160
effective search space used: 75228160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)