HHsearch alignment for GI: 254781020 and conserved domain: CHL00200

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional.
Probab=97.71  E-value=0.0031  Score=37.45  Aligned_cols=161  Identities=14%  Similarity=0.097  Sum_probs=92.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r  125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL  204 (337)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~  204 (337)
T Consensus        99 Y~N~i~~yG~e~F~~~~~~~GvdGlIi-pDLP~eE------------~~~~~~~~~~~gl~~I~-lvaPtt~~~Ri~~i~  164 (263)
T CHL00200         99 YYNPVLHYGINKFIKKISQAGVKGLII-PDLPYEE------------SDYLISVCNLYNIELIL-LIAPTSSKSRIQKIA  164 (263)
T ss_pred             EHHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHH
T ss_conf             206888738899999999849986874-7999788------------89999999855862166-647899699999999


Q ss_pred             HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf             76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r  205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG  284 (337)
Q Consensus       205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV  284 (337)
T Consensus       165 ~~a~GFiY~vs~~GvTG~~~~-----~--------~--~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGv  228 (263)
T CHL00200        165 RAAPGCIYLVSTTGVTGLKTE-----L--------D--KKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGI  228 (263)
T ss_pred             HHCCCCEEEEECCCCCCCCCC-----C--------H--HHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf             728980898533655687544-----5--------1--8799999999973-6998487358799999999974599999


Q ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf             3347999984146-689999999999999999
Q gi|254781020|r  285 GLASPFLKPAMDS-SDAVVAAIESLRKEFIVS  315 (337)
Q Consensus       285 ~iGr~~l~~~~~G-~~gv~~~l~~l~~el~~~  315 (337)
T Consensus       229 IVGSaiV~~i~~~~~~~~~~~i~~f~~~lk~a  260 (263)
T CHL00200        229 VIGSACVQILLGSSPEKGLDQLSEFCKVAKKS  260 (263)
T ss_pred             EECHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf             98789999998559076899999999999999