HHsearch alignment for GI: 254781020 and conserved domain: CHL00200
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional.
Probab=97.71 E-value=0.0031 Score=37.45 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=92.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
T Consensus 99 Y~N~i~~yG~e~F~~~~~~~GvdGlIi-pDLP~eE------------~~~~~~~~~~~gl~~I~-lvaPtt~~~Ri~~i~ 164 (263)
T CHL00200 99 YYNPVLHYGINKFIKKISQAGVKGLII-PDLPYEE------------SDYLISVCNLYNIELIL-LIAPTSSKSRIQKIA 164 (263)
T ss_pred EHHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHH
T ss_conf 206888738899999999849986874-7999788------------89999999855862166-647899699999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
T Consensus 165 ~~a~GFiY~vs~~GvTG~~~~-----~--------~--~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGv 228 (263)
T CHL00200 165 RAAPGCIYLVSTTGVTGLKTE-----L--------D--KKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHCCCCEEEEECCCCCCCCCC-----C--------H--HHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 728980898533655687544-----5--------1--8799999999973-6998487358799999999974599999
Q ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 3347999984146-689999999999999999
Q gi|254781020|r 285 GLASPFLKPAMDS-SDAVVAAIESLRKEFIVS 315 (337)
Q Consensus 285 ~iGr~~l~~~~~G-~~gv~~~l~~l~~el~~~ 315 (337)
T Consensus 229 IVGSaiV~~i~~~~~~~~~~~i~~f~~~lk~a 260 (263)
T CHL00200 229 VIGSACVQILLGSSPEKGLDQLSEFCKVAKKS 260 (263)
T ss_pred EECHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 98789999998559076899999999999999