HHsearch alignment for GI: 254781020 and conserved domain: COG0042
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].
Probab=99.51 E-value=8e-12 Score=87.98 Aligned_cols=252 Identities=14% Similarity=0.082 Sum_probs=147.8
Q ss_pred ECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCC-EEECCCCHHHH--CCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 898962568685012663343000256999999998099-06605202211--286688899999866401232202752
Q gi|254781020|r 50 FLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKV-AMAVGSQRVMF--SDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 50 i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~-~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
T Consensus 4 ~~~~~~~~~~~lAPM~gvtd-------~~fR~l~~~~ga~~l~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVTD-------LPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGS 76 (323)
T ss_pred CCCCCCCCCEEEECCCCCCC-------HHHHHHHHHHCCCCEEEEEEEECCHHHCCCHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 45555678778834889866-------89999999958875289740453045527700443056456678779997389
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCC-CCEEEEECCCCCC----
Q ss_conf 1236799899998776508985762532035665206885-----24307999999998739-9717850478668----
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMD-VPLLLKEVGCGLS---- 196 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~-~pii~k~v~~~~~---- 196 (337)
T Consensus 77 dp--~-~laeaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~ 153 (323)
T COG0042 77 DP--E-LLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDIL 153 (323)
T ss_pred CH--H-HHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCC
T ss_conf 98--9-99999999986699989876899928980898447771798999999999998538887499985787800200
Q ss_pred -HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf -8999999976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 197 -SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 197 -~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
T Consensus 154 ~~~ia~~~~~~G~~~ltVHgRtr----------~-~~y~-------~~a~~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~ 215 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTR----------A-QGYL-------GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKE 215 (323)
T ss_pred HHHHHHHHHHCCCCEEEEECCCH----------H-HCCC-------CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf 99999999967987899955667----------6-4689-------8648799999998679975985799499999999
Q ss_pred HHHH-CCCEEHHHHHHHH-----H----HCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 9983-8885233479999-----8----41466---8999999999999999999808985789614
Q gi|254781020|r 276 SIIL-GASLGGLASPFLK-----P----AMDSS---DAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 276 Alal-GAdaV~iGr~~l~-----~----~~~G~---~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
T Consensus 216 ~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~rk 282 (323)
T COG0042 216 MLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRK 282 (323)
T ss_pred HHHHHCCCEEEECHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9984189879974353169557553355306887887799999999999999998624106999999