HHsearch alignment for GI: 254781020 and conserved domain: COG0069
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism].
Probab=100.00 E-value=5.5e-33 Score=212.59 Aligned_cols=271 Identities=18% Similarity=0.124 Sum_probs=189.9
Q ss_pred CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH---------HHHHHHHHHCCCHHHHHC
Q ss_conf 89625686850126633430002569999999980990660520221128668---------889999986640123220
Q gi|254781020|r 52 GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA---------IKSFELRQYAPHTVLISN 122 (337)
Q Consensus 52 G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 122 (337)
T Consensus 162 ~~~i~~~~~~~aMS~GAlS~--eA~~alA~a~~~~G~~sntGEGGe~~~~~~~~~s~I~QvaSGRFGV~~~yL~~a~~ie 239 (485)
T COG0069 162 VLELKKRFVTGAMSFGALSK--EAHEALARAMNRIGTKSNTGEGGEDPERYEDGRSAIKQVASGRFGVTPEYLANADAIE 239 (485)
T ss_pred CCEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHCCCCEEE
T ss_conf 52044010025667764557--7889999999981671558788889788402455499961666764878827563699
Q ss_pred CCCCCC----------CCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CEEEEEC
Q ss_conf 275212----------36799899998776508985762532035665206885243079999999987399-7178504
Q gi|254781020|r 123 LGAVQL----------NYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV-PLLLKEV 191 (337)
Q Consensus 123 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-pii~k~v 191 (337)
T Consensus 240 IKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP---~p-----HHDiysieDLaqlI~dLk~~~~~~~I~VKlv 311 (485)
T COG0069 240 IKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISP---PP-----HHDIYSIEDLAQLIKDLKEANPWAKISVKLV 311 (485)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC---CC-----CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 986057778988989976579889976189988777589---97-----4665698899999999996188970699992
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 78668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 192 GCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
T Consensus 312 a~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP----~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~ 387 (485)
T COG0069 312 AEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIP----WELGLAETHQTLVLNGLRDKVKLIADGGLRTGA 387 (485)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCH----HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 5655677876664046988997589986787856576368707----998899999999975986416999428706789
Q ss_pred HHHHHHHHCCCEEHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999983888523347999984------------------------------146689999999999999999998089
Q gi|254781020|r 272 DILKSIILGASLGGLASPFLKPA------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 272 Dv~kAlalGAdaV~iGr~~l~~~------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~ 321 (337)
T Consensus 388 DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~ 467 (485)
T COG0069 388 DVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGK 467 (485)
T ss_pred HHHHHHHHCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999970864552021999985338664415899975034058888763374410899999999999999999998678
Q ss_pred CCHHHHHCCCCCCCC
Q ss_conf 857896149600056
Q gi|254781020|r 322 KRVQELYLNTALIRH 336 (337)
Q Consensus 322 ~~i~el~~~~~~i~~ 336 (337)
T Consensus 468 ~~l~el~g~~d~L~~ 482 (485)
T COG0069 468 RSLSELIGRTDLLRT 482 (485)
T ss_pred CCHHHHHCCHHHHHC
T ss_conf 999997454676640