HHsearch alignment for GI: 254781020 and conserved domain: COG0069

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism].
Probab=100.00  E-value=5.5e-33  Score=212.59  Aligned_cols=271  Identities=18%  Similarity=0.124  Sum_probs=189.9

Q ss_pred             CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH---------HHHHHHHHHCCCHHHHHC
Q ss_conf             89625686850126633430002569999999980990660520221128668---------889999986640123220
Q gi|254781020|r   52 GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA---------IKSFELRQYAPHTVLISN  122 (337)
Q Consensus        52 G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~  122 (337)
T Consensus       162 ~~~i~~~~~~~aMS~GAlS~--eA~~alA~a~~~~G~~sntGEGGe~~~~~~~~~s~I~QvaSGRFGV~~~yL~~a~~ie  239 (485)
T COG0069         162 VLELKKRFVTGAMSFGALSK--EAHEALARAMNRIGTKSNTGEGGEDPERYEDGRSAIKQVASGRFGVTPEYLANADAIE  239 (485)
T ss_pred             CCEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHCCCCEEE
T ss_conf             52044010025667764557--7889999999981671558788889788402455499961666764878827563699


Q ss_pred             CCCCCC----------CCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CEEEEEC
Q ss_conf             275212----------36799899998776508985762532035665206885243079999999987399-7178504
Q gi|254781020|r  123 LGAVQL----------NYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV-PLLLKEV  191 (337)
Q Consensus       123 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-pii~k~v  191 (337)
T Consensus       240 IKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP---~p-----HHDiysieDLaqlI~dLk~~~~~~~I~VKlv  311 (485)
T COG0069         240 IKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISP---PP-----HHDIYSIEDLAQLIKDLKEANPWAKISVKLV  311 (485)
T ss_pred             EEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC---CC-----CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             986057778988989976579889976189988777589---97-----4665698899999999996188970699992


Q ss_pred             CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf             78668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r  192 GCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV  271 (337)
Q Consensus       192 ~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~  271 (337)
T Consensus       312 a~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP----~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~  387 (485)
T COG0069         312 AEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIP----WELGLAETHQTLVLNGLRDKVKLIADGGLRTGA  387 (485)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCH----HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf             5655677876664046988997589986787856576368707----998899999999975986416999428706789


Q ss_pred             HHHHHHHHCCCEEHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             99999983888523347999984------------------------------146689999999999999999998089
Q gi|254781020|r  272 DILKSIILGASLGGLASPFLKPA------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGT  321 (337)
Q Consensus       272 Dv~kAlalGAdaV~iGr~~l~~~------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~  321 (337)
T Consensus       388 DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~  467 (485)
T COG0069         388 DVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGK  467 (485)
T ss_pred             HHHHHHHHCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99999970864552021999985338664415899975034058888763374410899999999999999999998678


Q ss_pred             CCHHHHHCCCCCCCC
Q ss_conf             857896149600056
Q gi|254781020|r  322 KRVQELYLNTALIRH  336 (337)
Q Consensus       322 ~~i~el~~~~~~i~~  336 (337)
T Consensus       468 ~~l~el~g~~d~L~~  482 (485)
T COG0069         468 RSLSELIGRTDLLRT  482 (485)
T ss_pred             CCHHHHHCCHHHHHC
T ss_conf             999997454676640