HHsearch alignment for GI: 254781020 and conserved domain: COG0329
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=95.40 E-value=0.12 Score=28.03 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCEEEECHHH-HHHHHCHHHHHHHHHHHHHHCC--EEECCCCHHHH--CCHHHHHHHHH-HHHCC-CHHHHHCCCCCCCC
Q ss_conf 6868501266-3343000256999999998099--06605202211--28668889999-98664-01232202752123
Q gi|254781020|r 57 FPLLISSMTG-GNNKMIERINRNLAIAAEKTKV--AMAVGSQRVMF--SDHNAIKSFEL-RQYAP-HTVLISNLGAVQLN 129 (337)
Q Consensus 57 ~Pv~iapmsg-g~~~~~~~~~~~lA~aa~~~g~--~~~~g~~~~~~--~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 129 (337)
T Consensus 9 i~a~vTPF~~dg~--vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~ 86 (299)
T COG0329 9 IPALVTPFDEDGS--VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTA 86 (299)
T ss_pred EECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 0120389989998--39999999999999849988997986657221699999999999999968977789862877799
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHH
Q ss_conf 67998999987765089857625320356652068852430799999999873997178504----78668899999997
Q gi|254781020|r 130 YDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV----GCGLSSMDIELGLK 205 (337)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v----~~~~~~~~~~~a~~ 205 (337)
T Consensus 87 --e-ai~lak~a~~~Gad~il~v~PyY~-------k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 87 --E-AIELAKHAEKLGADGILVVPPYYN-------KPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred --H-HHHHHHHHHHCCCCEEEEECCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf --9-999999999709999998489788-------989799999999999851899899978752489999999999827
Q ss_pred CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 6997999458888651001231023443232443106346889999985228-987997298888899999998388852
Q gi|254781020|r 206 SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN-EAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 206 aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
T Consensus 157 -~~nivgiKd~~g----d-------------------~~~~~~~~~--~~~~~~f-~v~~G~---d~~~~~~~~~G~~G~ 206 (299)
T COG0329 157 -HPNIVGVKDSSG----D-------------------LDRLEEIIA--ALGDRDF-IVLSGD---DELALPALLLGADGV 206 (299)
T ss_pred -CCCEEEEEECCC----C-------------------HHHHHHHHH--HCCCCCE-EEEECC---HHHHHHHHHCCCCEE
T ss_conf -898899984788----9-------------------999999998--6487662-898266---588889986779858
Q ss_pred HHHH
Q ss_conf 3347
Q gi|254781020|r 285 GLAS 288 (337)
Q Consensus 285 ~iGr 288 (337)
T Consensus 207 is~~ 210 (299)
T COG0329 207 ISVT 210 (299)
T ss_pred EECC
T ss_conf 8410