HHsearch alignment for GI: 254781020 and conserved domain: COG0329

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane].
Probab=95.40  E-value=0.12  Score=28.03  Aligned_cols=190  Identities=17%  Similarity=0.204  Sum_probs=89.0

Q ss_pred             CCEEEECHHH-HHHHHCHHHHHHHHHHHHHHCC--EEECCCCHHHH--CCHHHHHHHHH-HHHCC-CHHHHHCCCCCCCC
Q ss_conf             6868501266-3343000256999999998099--06605202211--28668889999-98664-01232202752123
Q gi|254781020|r   57 FPLLISSMTG-GNNKMIERINRNLAIAAEKTKV--AMAVGSQRVMF--SDHNAIKSFEL-RQYAP-HTVLISNLGAVQLN  129 (337)
Q Consensus        57 ~Pv~iapmsg-g~~~~~~~~~~~lA~aa~~~g~--~~~~g~~~~~~--~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~  129 (337)
T Consensus         9 i~a~vTPF~~dg~--vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~   86 (299)
T COG0329           9 IPALVTPFDEDGS--VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTA   86 (299)
T ss_pred             EECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf             0120389989998--39999999999999849988997986657221699999999999999968977789862877799


Q ss_pred             CCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHH
Q ss_conf             67998999987765089857625320356652068852430799999999873997178504----78668899999997
Q gi|254781020|r  130 YDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV----GCGLSSMDIELGLK  205 (337)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v----~~~~~~~~~~~a~~  205 (337)
T Consensus        87 --e-ai~lak~a~~~Gad~il~v~PyY~-------k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~  156 (299)
T COG0329          87 --E-AIELAKHAEKLGADGILVVPPYYN-------KPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE  156 (299)
T ss_pred             --H-HHHHHHHHHHCCCCEEEEECCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf             --9-999999999709999998489788-------989799999999999851899899978752489999999999827


Q ss_pred             CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf             6997999458888651001231023443232443106346889999985228-987997298888899999998388852
Q gi|254781020|r  206 SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN-EAQFIASGGLRNGVDILKSIILGASLG  284 (337)
Q Consensus       206 aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV  284 (337)
T Consensus       157 -~~nivgiKd~~g----d-------------------~~~~~~~~~--~~~~~~f-~v~~G~---d~~~~~~~~~G~~G~  206 (299)
T COG0329         157 -HPNIVGVKDSSG----D-------------------LDRLEEIIA--ALGDRDF-IVLSGD---DELALPALLLGADGV  206 (299)
T ss_pred             -CCCEEEEEECCC----C-------------------HHHHHHHHH--HCCCCCE-EEEECC---HHHHHHHHHCCCCEE
T ss_conf             -898899984788----9-------------------999999998--6487662-898266---588889986779858


Q ss_pred             HHHH
Q ss_conf             3347
Q gi|254781020|r  285 GLAS  288 (337)
Q Consensus       285 ~iGr  288 (337)
T Consensus       207 is~~  210 (299)
T COG0329         207 ISVT  210 (299)
T ss_pred             EECC
T ss_conf             8410