HHsearch alignment for GI: 254781020 and conserved domain: COG1304
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism].
Probab=100.00 E-value=0 Score=369.19 Aligned_cols=309 Identities=31% Similarity=0.411 Sum_probs=259.4
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHH
Q ss_conf 57899999--8530255897475688630324557899810174629989896256868501266334300025699999
Q gi|254781020|r 4 DRKIDHIN--IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAI 81 (337)
Q Consensus 4 ~~~~~~i~--~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~ 81 (337)
T Consensus 12 ~~~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~--~idlst~~~G~~l~~Pi~iapmt~g-~~~~~~ge~~~a~ 88 (360)
T COG1304 12 LPKAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVD--DIDLSTTFLGQKLSAPIIIAPMTGG-GLAHPEGEVINAK 88 (360)
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCCCC--CCCCCEEECCCCCCCCEEEECCCCC-CCCCHHHHHHHHH
T ss_conf 642768998612653007554666634225324578866--5765157558602588788044455-5357356999999
Q ss_pred HHHHHCCEEECCCCHHHHC-----CHHHHHHH-HHHHHCCCHH-HHHCCCCCCCCCCC----CHHHHHHHHHHHCCCEEE
Q ss_conf 9998099066052022112-----86688899-9998664012-32202752123679----989999877650898576
Q gi|254781020|r 82 AAEKTKVAMAVGSQRVMFS-----DHNAIKSF-ELRQYAPHTV-LISNLGAVQLNYDF----GVQKAHQAVHVLGADGLF 150 (337)
Q Consensus 82 aa~~~g~~~~~g~~~~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 150 (337)
T Consensus 89 ~A~~a~~~~i~s~~gs~~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~ 168 (360)
T COG1304 89 LAAAAGEPFILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALA 168 (360)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 99980887010032557299952171545565987776499999999669840363157542678899998534777201
Q ss_pred ECCCCHHHHHHHCCCCCHHH-----------------HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 25320356652068852430-----------------7999999998739971785047866889999999769979994
Q gi|254781020|r 151 LHLNPLQEIIQPNGNTNFAD-----------------LSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
T Consensus 169 ~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV---~~~~D~~~a~~tg~~~I~v 245 (360)
T COG1304 169 IHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGI---LAPEDAAGAGGTGADGIEV 245 (360)
T ss_pred CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCC---CCHHHHHHHCCCCCEEEEE
T ss_conf 3354778734876665653004589999984378733377776787750775877478---9788887633688228999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 58888651001231023443232443106346889999985-22898799729888889999999838885233479999
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
T Consensus 246 snhgg---------r---------qlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 246 SNHGG---------R---------QLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred ECCCC---------C---------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 76787---------4---------02578776999999999718871799638878778999999937765452599999
Q ss_pred HH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 84-146689999999999999999998089857896149600056
Q gi|254781020|r 293 PA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 293 ~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
T Consensus 308 ~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 308 GLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECC
T ss_conf 998556878999999999999999974288819996557366124