HHsearch alignment for GI: 254781020 and conserved domain: COG1304

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism].
Probab=100.00  E-value=0  Score=369.19  Aligned_cols=309  Identities=31%  Similarity=0.411  Sum_probs=259.4

Q ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHH
Q ss_conf             57899999--8530255897475688630324557899810174629989896256868501266334300025699999
Q gi|254781020|r    4 DRKIDHIN--IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAI   81 (337)
Q Consensus         4 ~~~~~~i~--~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~   81 (337)
T Consensus        12 ~~~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~--~idlst~~~G~~l~~Pi~iapmt~g-~~~~~~ge~~~a~   88 (360)
T COG1304          12 LPKAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVD--DIDLSTTFLGQKLSAPIIIAPMTGG-GLAHPEGEVINAK   88 (360)
T ss_pred             CCHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCCCC--CCCCCEEECCCCCCCCEEEECCCCC-CCCCHHHHHHHHH
T ss_conf             642768998612653007554666634225324578866--5765157558602588788044455-5357356999999


Q ss_pred             HHHHHCCEEECCCCHHHHC-----CHHHHHHH-HHHHHCCCHH-HHHCCCCCCCCCCC----CHHHHHHHHHHHCCCEEE
Q ss_conf             9998099066052022112-----86688899-9998664012-32202752123679----989999877650898576
Q gi|254781020|r   82 AAEKTKVAMAVGSQRVMFS-----DHNAIKSF-ELRQYAPHTV-LISNLGAVQLNYDF----GVQKAHQAVHVLGADGLF  150 (337)
Q Consensus        82 aa~~~g~~~~~g~~~~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  150 (337)
T Consensus        89 ~A~~a~~~~i~s~~gs~~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~  168 (360)
T COG1304          89 LAAAAGEPFILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALA  168 (360)
T ss_pred             HHHHCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf             99980887010032557299952171545565987776499999999669840363157542678899998534777201


Q ss_pred             ECCCCHHHHHHHCCCCCHHH-----------------HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf             25320356652068852430-----------------7999999998739971785047866889999999769979994
Q gi|254781020|r  151 LHLNPLQEIIQPNGNTNFAD-----------------LSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI  213 (337)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v  213 (337)
T Consensus       169 ~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV---~~~~D~~~a~~tg~~~I~v  245 (360)
T COG1304         169 IHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGI---LAPEDAAGAGGTGADGIEV  245 (360)
T ss_pred             CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCC---CCHHHHHHHCCCCCEEEEE
T ss_conf             3354778734876665653004589999984378733377776787750775877478---9788887633688228999


Q ss_pred             CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf             58888651001231023443232443106346889999985-22898799729888889999999838885233479999
Q gi|254781020|r  214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK  292 (337)
Q Consensus       214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~  292 (337)
T Consensus       246 snhgg---------r---------qlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~  307 (360)
T COG1304         246 SNHGG---------R---------QLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY  307 (360)
T ss_pred             ECCCC---------C---------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             76787---------4---------02578776999999999718871799638878778999999937765452599999


Q ss_pred             HH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf             84-146689999999999999999998089857896149600056
Q gi|254781020|r  293 PA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH  336 (337)
Q Consensus       293 ~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~  336 (337)
T Consensus       308 ~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~  352 (360)
T COG1304         308 GLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG  352 (360)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECC
T ss_conf             998556878999999999999999974288819996557366124