HHsearch alignment for GI: 254781020 and conserved domain: PRK02506
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed.
Probab=99.93 E-value=1.8e-24 Score=162.42 Aligned_cols=271 Identities=14% Similarity=0.062 Sum_probs=160.8
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHH---------------------HHCCH
Q ss_conf 46299898962568685012663343000256999999998099066-052022---------------------11286
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRV---------------------MFSDH 102 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~---------------------~~~~~ 102 (337)
T Consensus 1 ~~st~~~Gl~f~NPi~lAaG~~-~----~~--~e~~~~~~~~G~G~v~~kTit~~pq~GNp~PR~~r~~~~~iN~~G~~n 73 (308)
T PRK02506 1 STATQIAGFSFDNCLMNAAGVY-C----MT--KEELEEVEASQAGSFVTKTATLEVRPGNPEPRYADTPLGSINSMGLPN 73 (308)
T ss_pred CCCEEECCEECCCCCEECCCCC-C----CC--HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCCC
T ss_conf 9887989995599888786789-9----89--999999997697389954235457669999869976753012154785
Q ss_pred HHHH-HHH----HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC-CEEEECCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 6888-999----9986640123220275212367998999987765089-857625320356652068852430799999
Q gi|254781020|r 103 NAIK-SFE----LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGA-DGLFLHLNPLQEIIQPNGNTNFADLSSKIA 176 (337)
Q Consensus 103 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 176 (337)
T Consensus 74 ~G~~~~~~~l~~~~~~~~~~~vi~si~g~--~~~e-~~~~~~~~~~~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~ 150 (308)
T PRK02506 74 NGFDYYLDYVLDLQKTGPHKPHFLSVVGL--SPEE-THTILKKIQASDFEGLVELNLSCPNVPGKPQIAYDFETTDQILT 150 (308)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEC--CHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf 63899999889999627999758888507--7537-78889998754754255463337885105555228999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHH---HHHCCCCEEEECCCCC-CCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 99987399717850478668899999---9976997999458888-6510012310234432324431063468899999
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMDIEL---GLKSGIRYFDIAGRGG-TSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~~~~---a~~aGad~i~v~~~gG-~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
T Consensus 151 ~v~~~~~~Pi~vKlsP~~~~~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~~l~~~-al~~v 229 (308)
T PRK02506 151 EVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGDYIKPT-ALANV 229 (308)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH-HHHHH
T ss_conf 99987503334558987776769999998561565379887023566201377510156788788776113379-99999
Q ss_pred H----HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 8----522898799729888889999999838885233479999841466899999999999999999980898578961
Q gi|254781020|r 253 R----PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 253 ~----~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
T Consensus 230 ~~~~~~~~~~i~IIg~GGI~s~~Da~e~i~aGAs~VQv~Tal~~---~Gp~----~~~~I~~~L~~~l~~~G~~si~d~~ 302 (308)
T PRK02506 230 HAFYQRLKPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK---EGPA----IFERITKELKAIMVEKGYQSLEDFR 302 (308)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEE---ECCH----HHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf 99999838996389866707899999999819872068422204---5947----9999999999999984999889965
Q ss_pred CCCCC
Q ss_conf 49600
Q gi|254781020|r 329 LNTAL 333 (337)
Q Consensus 329 ~~~~~ 333 (337)
T Consensus 303 G~~~~ 307 (308)
T PRK02506 303 GKLKY 307 (308)
T ss_pred CEEEC
T ss_conf 44201