HHsearch alignment for GI: 254781020 and conserved domain: PRK05437
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional.
Probab=100.00 E-value=0 Score=492.41 Aligned_cols=334 Identities=45% Similarity=0.722 Sum_probs=315.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHH
Q ss_conf 91157899999853025589747568863032455789981017462998989625686850126633430002569999
Q gi|254781020|r 1 MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLA 80 (337)
Q Consensus 1 ~~~~~~~~~i~~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA 80 (337)
T Consensus 5 ~~~~RK~eHi~lal~~~~~~~~~~~fd~v~l~h~aLPe~~~~diD~st~~lG~~l~~P~~I~aMTGG~~~~-~~IN~~LA 83 (351)
T PRK05437 5 QIENRKDEHIEIALKQDVEYQKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKA-KEINRKLA 83 (351)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEECCCCCCCCEEEECCCCCCHHH-HHHHHHHH
T ss_conf 67778999999985443456778987547885478765888777065258872537876886534687546-28999999
Q ss_pred HHHHHHCCEEECCCCHHHHCCHHHHHHHH-HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 99998099066052022112866888999-99866401232202752123679989999877650898576253203566
Q gi|254781020|r 81 IAAEKTKVAMAVGSQRVMFSDHNAIKSFE-LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEI 159 (337)
Q Consensus 81 ~aa~~~g~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (337)
T Consensus 84 ~~A~~~gi~m~vGSqr~al~~~~~~~sf~vvR~~~p~~~l~aNiGa~~~-~~~~~~~~~~av~~i~AdAl~iHlN~~QEl 162 (351)
T PRK05437 84 EAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPDGLLFANIGAVQL-YGYGVEEAQRAVEMIEADALQIHLNPLQEL 162 (351)
T ss_pred HHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 9999839877733178885391456569999986888738861272101-435899999999971678157524624540
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 52068852430799999999873997178504786688999999976997999458888651001231023443232443
Q gi|254781020|r 160 IQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQ 239 (337)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~ 239 (337)
T Consensus 163 ~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKeVG~Gis~e~a~~l~~~Gv~~IdVsg~GGTnf~~IE~~R~~~~~~~~~~~ 242 (351)
T PRK05437 163 VQPEGDRDFRGWLDRIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAVENYRAKQRRLASYFA 242 (351)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 28888977889999999999867998898521578899999999967999999579988557999988710212457777
Q ss_pred HCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10634688999998522898799729888889999999838885233479999841-46689999999999999999998
Q gi|254781020|r 240 DWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM-DSSDAVVAAIESLRKEFIVSMFL 318 (337)
Q Consensus 240 ~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~l~~el~~~m~~ 318 (337)
T Consensus 243 ~wGipT~~sL~e~~~~~~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~l~~~g~e~~~~~l~~~~~elk~~M~L 322 (351)
T PRK05437 243 DWGIPTAQSLLEARSALPDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKAALEGGVEAVIEEIEGWIEELKTAMFL 322 (351)
T ss_pred HCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34866899999999747998299627878789999999955107775899999998569999999999999999999998
Q ss_pred CCCCCHHHHHCCCCCCCC
Q ss_conf 089857896149600056
Q gi|254781020|r 319 LGTKRVQELYLNTALIRH 336 (337)
Q Consensus 319 ~G~~~i~el~~~~~~i~~ 336 (337)
T Consensus 323 ~G~~~i~eL~~~~~i~~g 340 (351)
T PRK05437 323 TGAKNIAELRQVPLVLSG 340 (351)
T ss_pred HCCCCHHHHHCCCEEECH
T ss_conf 689989998179999877