HHsearch alignment for GI: 254781020 and conserved domain: PRK08385

Probab=96.55  E-value=0.044  Score=30.64  Aligned_cols=98  Identities=17%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCH
Q ss_conf             52430799999999873997178504786688999999976997999458888651001231023443232443106346
Q gi|254781020|r  166 TNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPT  245 (337)
Q Consensus       166 ~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~  245 (337)
T Consensus       165 i~~~~~~~av~~~r~~~~~~~IeVEv---~~lee~~~a~~~g~d~I~LDn~s~------e~----------------~--  217 (279)
T PRK08385        165 LALVPLEEAIRRAKEFSVYKVVEVEV---ESLEDALKAAKAGADIIMLDNMTP------EE----------------I--  217 (279)
T ss_pred             HHHCCHHHHHHHHHHHCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH------HH----------------H--
T ss_conf             76438899999999848996189970---989999999976999999849999------99----------------9--


Q ss_pred             HHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf             889999985--2289879972988888999999983888523347999
Q gi|254781020|r  246 PLSLEMARP--YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL  291 (337)
Q Consensus       246 ~~al~~~~~--~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l  291 (337)
T Consensus       218 ~~~v~~l~~~~~~~~v~ieaSGGI~-~~ni~~ya~tGVD~IS~g~lt~  264 (279)
T PRK08385        218 REVIEALKELGLREKVKIEVSGGIT-PETIAEYAKLDVDVISLGALTH  264 (279)
T ss_pred             HHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHHC
T ss_conf             9999998750768978999978998-9999999855989998497776