HHsearch alignment for GI: 254781020 and conserved domain: PRK10415
>PRK10415 tRNA-dihydrouridine synthase B; Provisional.
Probab=99.63 E-value=1.4e-13 Score=98.41 Aligned_cols=248 Identities=15% Similarity=0.050 Sum_probs=145.0
Q ss_pred EECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHH--CCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 989896256868501266334300025699999999809906605202211--286688899999866401232202752
Q gi|254781020|r 49 EFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMF--SDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 49 ~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
T Consensus 2 ~ig~~~~~~~l~lAPMagvtd~-------~FR~l~~~~Ga~l~~TEmv~a~~~~~~~~~~~~~~--~~~~~~~~---~~v 69 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDR-------PFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM--VHVDEPGI---RTV 69 (321)
T ss_pred CCCCEECCCCEEECCCCCCCCH-------HHHHHHHHHCCCEEEECCEEECHHHHCCHHHHHHH--CCCCCCCC---CEE
T ss_conf 3798844898897357899489-------99999999883999987587127773384889863--04678898---059
Q ss_pred CCCCCCCHH---HHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEEC-CC---C
Q ss_conf 123679989---9998776508985762532035665206885-----2430799999999873997178504-78---6
Q gi|254781020|r 127 QLNYDFGVQ---KAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKEV-GC---G 194 (337)
Q Consensus 127 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~v-~~---~ 194 (337)
T Consensus 70 Ql~G-~dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~ 148 (321)
T PRK10415 70 QIAG-SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH 148 (321)
T ss_pred EECC-CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 9726-999999999998876499989431899989970798365063398999999999973448746999846888522
Q ss_pred -CCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf -6889999999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 195 -LSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 195 -~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
T Consensus 149 ~~~~~~~~~~e~aG~~~itvHgRT~---------~q~y~---------g~adw~~i~~vk~~-~~iPvi~NGDI~~~~da 209 (321)
T PRK10415 149 RNCEEIAQLAEDCGIQALTIHGRTR---------ACLFN---------GEAEYDSIRAVKQK-VSIPVIANGDITDPLKA 209 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEEHHHH---------HHHHC---------CCCCHHHHHHHHHC-CCCCEEECCCCCCHHHH
T ss_conf 4399999999856988999972213---------44316---------99877999999854-79978965891999999
Q ss_pred HHHHH-HCCCEEHHHHHHHH-----H-----HCCC----HHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHH
Q ss_conf 99998-38885233479999-----8-----4146----689999999999999999998089-8578961
Q gi|254781020|r 274 LKSII-LGASLGGLASPFLK-----P-----AMDS----SDAVVAAIESLRKEFIVSMFLLGT-KRVQELY 328 (337)
Q Consensus 274 ~kAla-lGAdaV~iGr~~l~-----~-----~~~G----~~gv~~~l~~l~~el~~~m~~~G~-~~i~el~ 328 (337)
T Consensus 210 ~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g~~~~~~~~~e~~~~~~~h~~~~~~~~g~~~~~~~~R 280 (321)
T PRK10415 210 RAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 (321)
T ss_pred HHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 99998629999997566536987799999998169979996999999999999999999869075699999