HHsearch alignment for GI: 254781020 and conserved domain: PRK10550
>PRK10550 tRNA-dihydrouridine synthase C; Provisional.
Probab=98.99 E-value=1.1e-07 Score=63.59 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHC--CCCEEEEE-CCC---CCCHHHHHHHHHC
Q ss_conf 98776508985762532035665206885-----2430799999999873--99717850-478---6688999999976
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAM--DVPLLLKE-VGC---GLSSMDIELGLKS 206 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~--~~pii~k~-v~~---~~~~~~~~~a~~a 206 (337)
T Consensus 81 A~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~~~~e~~~~~~~~ 160 (312)
T PRK10550 81 AARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGDRKFEIADAVQQA 160 (312)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99999769996625479997896689926853289779999999999745878995477535899863199999999973
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCCEE
Q ss_conf 99799945888865100123102344323244310634-6889999985228987997298888899999998-388852
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP-TPLSLEMARPYCNEAQFIASGGLRNGVDILKSII-LGASLG 284 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~-~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla-lGAdaV 284 (337)
T Consensus 161 G~~~ltvH~RT~---------~q~y~---------~~~~dw~~i~~~~~~-~~iPvi~NGdI~s~~d~~~~~~~tg~dgv 221 (312)
T PRK10550 161 GATELVVHGRTK---------EQGYR---------AEHIDWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAISGCDAV 221 (312)
T ss_pred CCCEEEEECCCH---------HHCCC---------CCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf 998799905526---------53589---------983489999999974-89989970795999999999871489999
Q ss_pred HHHHHHH
Q ss_conf 3347999
Q gi|254781020|r 285 GLASPFL 291 (337)
Q Consensus 285 ~iGr~~l 291 (337)
T Consensus 222 MiGRgal 228 (312)
T PRK10550 222 MIGRGAL 228 (312)
T ss_pred EECHHHH
T ss_conf 9658553