HHsearch alignment for GI: 254781020 and conserved domain: PRK11815
>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=99.33 E-value=2.5e-10 Score=79.18 Aligned_cols=213 Identities=12% Similarity=0.074 Sum_probs=121.5
Q ss_pred CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCE-EECCCCH----HHHCCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 89625686850126633430002569999999980990-6605202----211286688899999866401232202752
Q gi|254781020|r 52 GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVA-MAVGSQR----VMFSDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 52 G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~-~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
T Consensus 6 ~~~~~~~~~lAPM~gvTD~~f----R~l---~R~~~~~~l~yTEMvsa~al~~~~~---~~-~l~~~~~E~Pv~vQl~G~ 74 (333)
T PRK11815 6 PKILPRRFSVAPMMDWTDRHC----RYF---HRLLSRHALLYTEMVTTGAIIHGDR---ER-LLAFDPEEHPVALQLGGS 74 (333)
T ss_pred CCCCCCCEEEECCCCCCCHHH----HHH---HHHHCCCCEEEECCEEEHHHHCCCH---HH-HHHCCCCCCCEEEEECCC
T ss_conf 611688558637799807999----999---9997799779869985146661798---88-850698779879997479
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCC-----CCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCC--
Q ss_conf 123679989999877650898576253203566520688-----5243079999999987399717850---478668--
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGN-----TNFADLSSKIALLSSAMDVPLLLKE---VGCGLS-- 196 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~~pii~k~---v~~~~~-- 196 (337)
T Consensus 75 dp~---~la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~ 151 (333)
T PRK11815 75 DPA---DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYE 151 (333)
T ss_pred CHH---HHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
T ss_conf 999---99999999987398853523899868873278017870799999999999987348853578631677775289
Q ss_pred --HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH--HHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf --89999999769979994588886510012310234432324431063468--89999985228987997298888899
Q gi|254781020|r 197 --SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP--LSLEMARPYCNEAQFIASGGLRNGVD 272 (337)
Q Consensus 197 --~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~--~al~~~~~~~~~v~IiadGGIr~g~D 272 (337)
T Consensus 152 ~l~~f~~~~~~aG~~~i~vH~R~a----------~l~Gl--spk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s~~~ 219 (333)
T PRK11815 152 FLCDFVDTVAEAGCDRFIVHARKA----------WLKGL--SPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEE 219 (333)
T ss_pred HHHHHHHHHHHCCCCEEEEEEHHH----------HHCCC--CHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 999999999975998899960278----------77267--877750587304899999997667871884599699999
Q ss_pred HHHHHHHCCCEEHHHHHHH
Q ss_conf 9999983888523347999
Q gi|254781020|r 273 ILKSIILGASLGGLASPFL 291 (337)
Q Consensus 273 v~kAlalGAdaV~iGr~~l 291 (337)
T Consensus 220 ~~~~l~~-~DGVMiGRga~ 237 (333)
T PRK11815 220 AKEHLQH-VDGVMIGRAAY 237 (333)
T ss_pred HHHHHHC-CCEEEEHHHHH
T ss_conf 9999855-99621148675