HHsearch alignment for GI: 254781020 and conserved domain: PRK13125
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional.
Probab=97.31 E-value=0.011 Score=34.28 Aligned_cols=152 Identities=11% Similarity=0.117 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
T Consensus 92 g~e~F~~~~~~~GvdGvIi-pDLP~e~---------~ee~~~~~~~~~~~gl~~I~-lvsPtt~~~ri~~i~~~s~gFvY 160 (247)
T PRK13125 92 SLDDLLNTAKEVGARGVLF-PDLLIDF---------PDELEKYVELIRRYGLAPVF-FTSPKFPDRLIRRLSKLSPLFIY 160 (247)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCC---------HHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHCCCEEE
T ss_conf 6999999999859975883-3888754---------67899999999976984699-95799819999999986897799
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 45888865100123102344323244310634688999998522898799729888889999999838885233479999
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
T Consensus 161 ~~~~gv-TG~~~~-----------------~~~~~~i~~ik~~~~~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSaiVk 222 (247)
T PRK13125 161 LGLYPA-TGVELP-----------------VYVERNIKRVRELVGDVYLVAGFAIDSPEDAAKALSAGADGVVVGTAFIR 222 (247)
T ss_pred EEEECC-CCCCCC-----------------CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 994436-788773-----------------25999999999856999858832879999999998558999998789999
Q ss_pred HHCCC-HHHHHHHHHHHHHHHH
Q ss_conf 84146-6899999999999999
Q gi|254781020|r 293 PAMDS-SDAVVAAIESLRKEFI 313 (337)
Q Consensus 293 ~~~~G-~~gv~~~l~~l~~el~ 313 (337)
T Consensus 223 ~i~~~~~~~~~~~v~~l~~al~ 244 (247)
T PRK13125 223 RLERNGVEEALSLLKEIRGALD 244 (247)
T ss_pred HHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9997698999999999999985