HHsearch alignment for GI: 254781020 and conserved domain: TIGR01036
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=99.71 E-value=4.6e-16 Score=112.97 Aligned_cols=275 Identities=16% Similarity=0.115 Sum_probs=164.9
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHHHHC-----------------
Q ss_conf 9810174629989896256868501266334300025699999999809906-6052022112-----------------
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRVMFS----------------- 100 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~~~~----------------- 100 (337)
T Consensus 41 ~~~~~P~L~~~vlG~~FpNPlGLAA---GfD---K~G~a--~d~l~AmGFG~~EiGTVTp~pQ~GN~~PRlFRL~e~~~l 112 (370)
T TIGR01036 41 LGAKDPVLEVTVLGLKFPNPLGLAA---GFD---KDGEA--LDALGAMGFGYLEIGTVTPKPQPGNPRPRLFRLIEDEAL 112 (370)
T ss_pred CCCCCCCCCCEECCCCCCCCHHHHC---CCC---CCHHH--HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 6888788643123410686133423---799---87669--987564184247541205888667777864254557887
Q ss_pred -CHHHHHH-------HHHHH--------HCCCHHHHHCCCCCC-CCCCCCHHHHHHHHHHHC--CCEEEECCCCHH--HH
Q ss_conf -8668889-------99998--------664012322027521-236799899998776508--985762532035--66
Q gi|254781020|r 101 -DHNAIKS-------FELRQ--------YAPHTVLISNLGAVQ-LNYDFGVQKAHQAVHVLG--ADGLFLHLNPLQ--EI 159 (337)
Q Consensus 101 -~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 159 (337)
T Consensus 113 iNRmGFNN~G~~~l~~~~k~~qqkqakla~y~~piGiNiGKNK~t~~~~a~~DY~~~~~~~~~~A~Y~~vN~SSPNTPgL 192 (370)
T TIGR01036 113 INRMGFNNHGADLLVERLKRFQQKQAKLARYKGPIGINIGKNKKTPAEDAKEDYKACLRKVGPLADYLVVNVSSPNTPGL 192 (370)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
T ss_conf 63205205679999999998654542027898526432488866654422668999999873210707886358897351
Q ss_pred HHHCCCCCHHHHHHHH----HHHHHHCC--CCEEEEECCCCCCH---HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCC
Q ss_conf 5206885243079999----99998739--97178504786688---999999976997999458888651001231023
Q gi|254781020|r 160 IQPNGNTNFADLSSKI----ALLSSAMD--VPLLLKEVGCGLSS---MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDL 230 (337)
Q Consensus 160 ~~~~~~~~~~~~~~~i----~~l~~~~~--~pii~k~v~~~~~~---~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~ 230 (337)
T Consensus 193 R~LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKIAPDL~~~dl~~IAd~~v~~~~dG~IATNT---T~sR~~Gv~g~ 269 (370)
T TIGR01036 193 RDLQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKIAPDLSESDLLDIADSAVELGIDGIIATNT---TVSRDLGVTGP 269 (370)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC---EECCCCCCCCC
T ss_conf 324014358999999999999999861278857897268988213899999998718984898445---10252002563
Q ss_pred CC--CCCHHHHHCCCCHH--HHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 44--32324431063468--899999-85228987997298888899999998388852334799998414668999999
Q gi|254781020|r 231 ES--DIGIVFQDWGIPTP--LSLEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAI 305 (337)
Q Consensus 231 ~~--~~~~~~~~~gi~~~--~al~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l 305 (337)
T Consensus 270 k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~EkI~AGASLlQ~YsgfIy---~GP----~l~ 342 (370)
T TIGR01036 270 KNSREETGGLSGKPLQKKSTEIIRRLYKELKGRLPIIGVGGISSAQNALEKIKAGASLLQIYSGFIY---KGP----PLV 342 (370)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCC---CCC----HHH
T ss_conf 2143567898875144778999999999964957899627857478899999847124456423466---771----679
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 99999999999980898578961496
Q gi|254781020|r 306 ESLRKEFIVSMFLLGTKRVQELYLNT 331 (337)
Q Consensus 306 ~~l~~el~~~m~~~G~~~i~el~~~~ 331 (337)
T Consensus 343 k~i~~~i~~lL~~~GFgsv~eAiGad 368 (370)
T TIGR01036 343 KEIVKEIEKLLKEDGFGSVKEAIGAD 368 (370)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf 99999999997517961224410235