HHsearch alignment for GI: 254781020 and conserved domain: TIGR01769
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=93.15 E-value=0.54 Score=24.23 Aligned_cols=143 Identities=18% Similarity=0.217 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--------------
Q ss_conf 989999877650898576253203566520688524307999999998739971785047866889--------------
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSM-------------- 198 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~-------------- 198 (337)
T Consensus 14 ~~~~IAk~~~~aGtD~ilvGGs~G---------i~e~~ld~~v~~ik~~~~~p~iLFP-G~~~~Ls~~ADAvlFmSlLNS 83 (212)
T TIGR01769 14 ELKKIAKNAKEAGTDAILVGGSLG---------ISEDKLDQVVKKIKEITNLPVILFP-GSVNLLSRKADAVLFMSLLNS 83 (212)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC---------CCHHHHHHHHHHHHHCCCCCEEECC-CCHHHHHHHHHHHHHHHHHCC
T ss_conf 699999999852898898366337---------3354788999986401578668827-884578888659888886536
Q ss_pred ------------HHHHHHHCC--C----CEEEECCCCC-CCCCCHHHHCCCCCCC---C---------------HHHHHC
Q ss_conf ------------999999769--9----7999458888-6510012310234432---3---------------244310
Q gi|254781020|r 199 ------------DIELGLKSG--I----RYFDIAGRGG-TSWSRIESHRDLESDI---G---------------IVFQDW 241 (337)
Q Consensus 199 ------------~~~~a~~aG--a----d~i~v~~~gG-~~~~~~~~~r~~~~~~---~---------------~~~~~~ 241 (337)
T Consensus 84 ~d~yfivGaqi~aA~~i~~~~PrlE~Ip~AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGS 163 (212)
T TIGR01769 84 ADTYFIVGAQIKAAVLIKKLQPRLEVIPTAYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGS 163 (212)
T ss_pred CCCCEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99736741515789999872788563652268875887404465200125899866689999999987413512131057
Q ss_pred CCCHH---HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 63468---899999852289879972988888999999983888523
Q gi|254781020|r 242 GIPTP---LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 242 gi~~~---~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
T Consensus 164 GAs~Pv~~e~i~~~k~~~~~I~LIVGGGIr~~EiA~~~v~aGAd~IV 210 (212)
T TIGR01769 164 GASEPVSPETISLVKKKISSIPLIVGGGIRSPEIALKIVLAGADVIV 210 (212)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf 86667866799999985489727752775888999999970898263