HHsearch alignment for GI: 254781020 and conserved domain: TIGR03128
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.15 E-value=0.083 Score=29.02 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=80.8
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999866401232202752123679989999877650898576253203566520688524307999999998739971
Q gi|254781020|r 107 SFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPL 186 (337)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pi 186 (337)
T Consensus 43 v~~lk~~~p~~~I~~DlK~----~D~g~~~~-~~~~~~Gad~itVh~~~~~~t------------i~~a~~~a~~~~~~v 105 (206)
T TIGR03128 43 VKEMKEAFPDRKVLADLKT----MDAGEYEA-EQAFAAGADIVTVLGVADDAT------------IKGAVKAAKKHGKEV 105 (206)
T ss_pred HHHHHHHCCCCEEEEEEEE----CCCHHHHH-HHHHHCCCCEEEEECCCCHHH------------HHHHHHHHHHCCCEE
T ss_conf 9999987899979999504----47438999-999972898999943489799------------999999999739979
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECC-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 78504786688999999976997999458-88865100123102344323244310634688999998522898799729
Q gi|254781020|r 187 LLKEVGCGLSSMDIELGLKSGIRYFDIAG-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASG 265 (337)
Q Consensus 187 i~k~v~~~~~~~~~~~a~~aGad~i~v~~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadG 265 (337)
T Consensus 106 ~vdl~~~~~~~~~a~~~~~~g~d~v~~h~g~d~----------~~~----------~~~~~~~~~~~~~~~~~~~i~v~g 165 (206)
T TIGR03128 106 QVDLINVKDKVKRAKELKELGADYIGVHTGLDE----------QAK----------GQNPFEDLQTILKLVKEARVAVAG 165 (206)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCH----------HHC----------CCCCHHHHHHHHHCCCCCCEEECC
T ss_conf 999747898899999999758988995025004----------432----------679889999998625787363679
Q ss_pred CCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8888899999998388852334799998
Q gi|254781020|r 266 GLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 266 GIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
T Consensus 166 Gi~~~-t~~~ai~~Gad~vVVGR~It~A 192 (206)
T TIGR03128 166 GINLD-TIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred CCCCC-CHHHHHHCCCCEEEECCCCCCC
T ss_conf 86835-6999986699999989612479