HHsearch alignment for GI: 254781020 and conserved domain: cd00951
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.58 E-value=0.12 Score=28.17 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHC--CCCEEEE
Q ss_conf 9987765089857625320356652068852430799999999873997178504-786688999999976--9979994
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKS--GIRYFDI 213 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~a--Gad~i~v 213 (337)
T Consensus 86 la~~a~~~Gadav~v~pPy~-------~~~~~~~l~~~~~~ia~a~~lpi~lYn~~~~~~~~~~l~~L~~~~p~i~giK~ 158 (289)
T cd00951 86 YAQAAEKAGADGILLLPPYL-------TEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKD 158 (289)
T ss_pred HHHHHHHCCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 99999975999999769888-------89999999999999998469986614887767789999999983687899997
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHHCCCEEHHHH
Q ss_conf 588886510012310234432324431063468899999852289879972988888-999999983888523347
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG-VDILKSIILGASLGGLAS 288 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g-~Dv~kAlalGAdaV~iGr 288 (337)
T Consensus 159 s~--~-----------------------d~~~~~~~--~~~~~~~~~~-~-~g~~~~~~~~~~~~~~G~~g~~~~~ 205 (289)
T cd00951 159 GV--G-----------------------DIELMRRI--VAKLGDRLLY-L-GGLPTAEVFALAYLAMGVPTYSSAV 205 (289)
T ss_pred CC--C-----------------------CHHHHHHH--HHHCCCCCEE-E-ECCCCCHHHHHHHHCCCCEEEEHHH
T ss_conf 88--8-----------------------99999999--9975998289-8-5898337999999849984982675