HHsearch alignment for GI: 254781020 and conserved domain: cd02803

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.61  E-value=3.9e-06  Score=54.52  Aligned_cols=143  Identities=18%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             HHHHHHCCCEEEECCCCHHH---HHHH-CCCC---C-------HHHHHHHHHHHHHHCCC--CEEEEECC-----CCCCH
Q ss_conf             87765089857625320356---6520-6885---2-------43079999999987399--71785047-----86688
Q gi|254781020|r  139 QAVHVLGADGLFLHLNPLQE---IIQP-NGNT---N-------FADLSSKIALLSSAMDV--PLLLKEVG-----CGLSS  197 (337)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~---~-------~~~~~~~i~~l~~~~~~--pii~k~v~-----~~~~~  197 (337)
T Consensus       148 ~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~vg~df~vgvRls~~d~~~~g~~~  227 (327)
T cd02803         148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL  227 (327)
T ss_pred             HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCH
T ss_conf             99998499989983576618887217546987777888989998999999999999739887617997702126899998


Q ss_pred             ----HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf             ----9999999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r  198 ----MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI  273 (337)
Q Consensus       198 ----~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv  273 (337)
T Consensus       228 ~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-----~~~~----~~~~~~~-~~~~~~~ik~~-~~~pvi~~G~i~~~~~a  296 (327)
T cd02803         228 EEAIEIAKALEEAGVDALHVSGGSYESPPP-----IIPP----PYVPEGY-FLELAEKIKKA-VKIPVIAVGGIRDPEVA  296 (327)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCC----CCCCCCC-CHHHHHHHHHH-CCCCEEEECCCCCHHHH
T ss_conf             999999999985599989977784566754-----4678----7777522-38999999997-69819998998999999


Q ss_pred             HHHHHHC-CCEEHHHHHHHH
Q ss_conf             9999838-885233479999
Q gi|254781020|r  274 LKSIILG-ASLGGLASPFLK  292 (337)
Q Consensus       274 ~kAlalG-AdaV~iGr~~l~  292 (337)
T Consensus       297 ~~~l~~g~~D~V~~gR~~ia  316 (327)
T cd02803         297 EEILAEGKADLVALGRALLA  316 (327)
T ss_pred             HHHHHCCCCCHHHHHHHHHH
T ss_conf             99998899312586699997