HHsearch alignment for GI: 254781020 and conserved domain: cd02929
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.45 E-value=0.0001 Score=46.18 Aligned_cols=142 Identities=11% Similarity=-0.012 Sum_probs=81.2
Q ss_pred HHHHHHHCCCEEEECCCCHHHH---HHH----CCCCC-------HHHHHHHHHHHHHHCCC--CEEEEECCC-------C
Q ss_conf 9877650898576253203566---520----68852-------43079999999987399--717850478-------6
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEI---IQP----NGNTN-------FADLSSKIALLSSAMDV--PLLLKEVGC-------G 194 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~-------~~~~~~~i~~l~~~~~~--pii~k~v~~-------~ 194 (337)
T Consensus 156 A~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~aVr~~vg~df~i~~R~s~~~~~~~~g~ 235 (370)
T cd02929 156 ALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGI 235 (370)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 99999859898997711355999734774578777468988999899999999999971998759999894125688999
Q ss_pred CCHHHHHH---HHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 68899999---997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 195 LSSMDIEL---GLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 195 ~~~~~~~~---a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
T Consensus 236 ~~~~~~~~~~~~~~~~~d~~~vs~g~~~~~~~~~-----------~~~~~g~-~~~~~~~ik~-~~~~Pvi~vG~i~~p~ 302 (370)
T cd02929 236 ESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDS-----------RFYPEGH-QEPYIKFVKQ-VTSKPVVGVGRFTSPD 302 (370)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----------CCCCCCC-CHHHHHHHHH-HCCCCEEEECCCCCHH
T ss_conf 8889999999997365797998855556656777-----------7678643-6599999998-6088089978979999
Q ss_pred HHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 999999838-885233479999
Q gi|254781020|r 272 DILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 272 Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
T Consensus 303 ~ae~~l~~G~aD~V~~gR~lla 324 (370)
T cd02929 303 KMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999998799426453479876