HHsearch alignment for GI: 254781020 and conserved domain: cd03332

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00  E-value=0  Score=414.10  Aligned_cols=290  Identities=22%  Similarity=0.287  Sum_probs=240.1

Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf             9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r    8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT   86 (337)
Q Consensus         8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~   86 (337)
T Consensus        38 dY~~gGa~de~tl~~N~~af~~~~l~PRvL--~dv~~~d~~t~llG~~~~~P~~iaP~-g~~~l~hp~gE~~~AraA~~~  114 (383)
T cd03332          38 AYVAGGAGSESTARANRDAFSRWRIVPRML--RGVTERDLSVELFGRTLAAPLLLAPI-GVQELFHPDAELATARAAAEL  114 (383)
T ss_pred             HHHCCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCEECCCCEEECHH-HHHHCCCCCHHHHHHHHHHHH
T ss_conf             886246661699999999998557767113--58888888645798156777388778-774414897789999999983


Q ss_pred             CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHC---
Q ss_conf             99066052022112866888999998664012322027521236799899998776508985762532035665206---
Q gi|254781020|r   87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPN---  163 (337)
Q Consensus        87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  163 (337)
T Consensus       115 g~~~~lSt~ss~slEeva~-------~~~~~~~wfQLY~~-~Dr~~~-~~ll~RA~~aG~~aLvlTVD~Pv~G~Rerd~r  185 (383)
T cd03332         115 GVPYILSTASSSSIEDVAA-------AAGDAPRWFQLYWP-KDDDLT-ESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLD  185 (383)
T ss_pred             CCCEECCCCCCCCHHHHHH-------HCCCCCEEEEEECC-CCHHHH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf             5862205776788999998-------66899639999515-888999-99999999738977999226866687654553


Q ss_pred             -----------------------------C-------------------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             -----------------------------8-------------------8524307999999998739971785047866
Q gi|254781020|r  164 -----------------------------G-------------------NTNFADLSSKIALLSSAMDVPLLLKEVGCGL  195 (337)
Q Consensus       164 -----------------------------~-------------------~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~  195 (337)
T Consensus       186 ~g~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plilKGI---~  262 (383)
T cd03332         186 LGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI---L  262 (383)
T ss_pred             CCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCC---C
T ss_conf             2688643303677754788999973256776545677501459999985378889989999999876998532356---8


Q ss_pred             CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHH
Q ss_conf             8899999997699799945888865100123102344323244310634688999998-522898799729888889999
Q gi|254781020|r  196 SSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDIL  274 (337)
Q Consensus       196 ~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~  274 (337)
T Consensus       263 ~~eDA~~A~~~G~dgIiVSNHGG---------RQLD~ap---------a~i~~LpeI~~aV~~~~~V~~DgGIRrG~DV~  324 (383)
T cd03332         263 HPDDARRAVEAGVDGVVVSNHGG---------RQVDGSI---------AALDALPEIVEAVGDRLTVLFDSGVRTGADIM  324 (383)
T ss_pred             CHHHHHHHHHCCCCEEEEECCCC---------CCCCCCC---------CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf             99999999975998899807863---------4467883---------27899999999847998499979978679999


Q ss_pred             HHHHHCCCEEHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf             9998388852334799998-4146689999999999999999998089857896149
Q gi|254781020|r  275 KSIILGASLGGLASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN  330 (337)
Q Consensus       275 kAlalGAdaV~iGr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~  330 (337)
T Consensus       325 KAlALGA~~V~iGRp~l~glaa~G~~GV~~~l~iL~~El~~~M~l~G~~si~el~~~  381 (383)
T cd03332         325 KALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRD  381 (383)
T ss_pred             HHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf             999769998987789999877231999999999999999999998589997785920