HHsearch alignment for GI: 254781020 and conserved domain: cd04724

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.55  E-value=0.049  Score=30.36  Aligned_cols=159  Identities=14%  Similarity=0.144  Sum_probs=91.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf             75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r  124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG  203 (337)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a  203 (337)
T Consensus        83 ~Y~N~i~~~G~e~F~~~~~~~Gv~Gviip-DLP~ee------------~~~~~~~~~~~~i~~I~-lvsPtt~~~ri~~i  148 (242)
T cd04724          83 GYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEE------------AEEFREAAKEYGLDLIF-LVAPTTPDERIKKI  148 (242)
T ss_pred             EECHHHHHHCHHHHHHHHHHCCCCEEEEC-CCCHHH------------HHHHHHHHHHCCCEEEE-EECCCCCHHHHHHH
T ss_conf             84457665289999999997599758706-999578------------46899999865983889-96898878999999


Q ss_pred             HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf             97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r  204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL  283 (337)
Q Consensus       204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda  283 (337)
T Consensus       149 ~~~s~gfiY~vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~-aDG  211 (242)
T cd04724         149 AELASGFIYYVSRTGVTGARTEL---------------PDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADG  211 (242)
T ss_pred             HHHCCCEEEEEECCCCCCCCCCC---------------HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH-CCE
T ss_conf             97479849998577777877556---------------49999999999871-68974874387999999999965-999


Q ss_pred             EHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Q ss_conf             23347999984146-6899999999999999
Q gi|254781020|r  284 GGLASPFLKPAMDS-SDAVVAAIESLRKEFI  313 (337)
Q Consensus       284 V~iGr~~l~~~~~G-~~gv~~~l~~l~~el~  313 (337)
T Consensus       212 vIVGSa~V~~i~~~~~~~~~~~~~~~~~~lk  242 (242)
T cd04724         212 VIVGSALVKIIEEGGEEEALEALKELAESLK  242 (242)
T ss_pred             EEECHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf             9987899999996396889999999999729