HHsearch alignment for GI: 254781020 and conserved domain: cd04724
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.55 E-value=0.049 Score=30.36 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=91.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
T Consensus 83 ~Y~N~i~~~G~e~F~~~~~~~Gv~Gviip-DLP~ee------------~~~~~~~~~~~~i~~I~-lvsPtt~~~ri~~i 148 (242)
T cd04724 83 GYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEE------------AEEFREAAKEYGLDLIF-LVAPTTPDERIKKI 148 (242)
T ss_pred EECHHHHHHCHHHHHHHHHHCCCCEEEEC-CCCHHH------------HHHHHHHHHHCCCEEEE-EECCCCCHHHHHHH
T ss_conf 84457665289999999997599758706-999578------------46899999865983889-96898878999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
T Consensus 149 ~~~s~gfiY~vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~-aDG 211 (242)
T cd04724 149 AELASGFIYYVSRTGVTGARTEL---------------PDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADG 211 (242)
T ss_pred HHHCCCEEEEEECCCCCCCCCCC---------------HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH-CCE
T ss_conf 97479849998577777877556---------------49999999999871-68974874387999999999965-999
Q ss_pred EHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Q ss_conf 23347999984146-6899999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDS-SDAVVAAIESLRKEFI 313 (337)
Q Consensus 284 V~iGr~~l~~~~~G-~~gv~~~l~~l~~el~ 313 (337)
T Consensus 212 vIVGSa~V~~i~~~~~~~~~~~~~~~~~~lk 242 (242)
T cd04724 212 VIVGSALVKIIEEGGEEEALEALKELAESLK 242 (242)
T ss_pred EEECHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 9987899999996396889999999999729