HHsearch alignment for GI: 254781020 and conserved domain: cd04732
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.87 E-value=0.00018 Score=44.67 Aligned_cols=75 Identities=17% Similarity=0.042 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 8999999976997999458--88865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~ 274 (337)
T Consensus 149 ~~~i~~~~~~g~geiilt~i~~dGt~------------------~G~d~---~ll~~i~~~-~~~p~i~~GGv~s~~di~ 206 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTL------------------SGPNF---ELYKELAAA-TGIPVIASGGVSSLDDIK 206 (234)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCC------------------CCCCH---HHHHHHHHH-CCCCEEEEECCCCHHHHH
T ss_conf 99999997458646998764256653------------------56899---999999865-799899981899999999
Q ss_pred HHHHHCCCEEHHHHHHHHH
Q ss_conf 9998388852334799998
Q gi|254781020|r 275 KSIILGASLGGLASPFLKP 293 (337)
Q Consensus 275 kAlalGAdaV~iGr~~l~~ 293 (337)
T Consensus 207 ~l~~~g~~gvivgsAlh~g 225 (234)
T cd04732 207 ALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHCCCCEEEEEHHHHCC
T ss_conf 9997799899998898779