HHsearch alignment for GI: 254781020 and conserved domain: cd04734
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.47 E-value=1.9e-05 Score=50.38 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHHCCCEEEECCCCHH---HHHHHC-CCC---C-------HHHHHHHHHHHHHHC--CCCEEEEECC-----CCCCH
Q ss_conf 8776508985762532035---665206-885---2-------430799999999873--9971785047-----86688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQ---EIIQPN-GNT---N-------FADLSSKIALLSSAM--DVPLLLKEVG-----CGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~---~-------~~~~~~~i~~l~~~~--~~pii~k~v~-----~~~~~ 197 (337)
T Consensus 148 ~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i~~Ris~~~~~~~g~~~ 227 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSP 227 (343)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
T ss_conf 99997399889844577746998469855899676798889998999999999999819877615886762356898998
Q ss_pred HH----HHHHHHCC-CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 99----99999769-97999458888651001231023443232443106346889999985228987997298888899
Q gi|254781020|r 198 MD----IELGLKSG-IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVD 272 (337)
Q Consensus 198 ~~----~~~a~~aG-ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~D 272 (337)
T Consensus 228 ~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~---~~~p-~~~~~~g~---~~~~a~~ik~-~~~~pvi~~G~i~~~~~ 299 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLA---HVVP-SMGMPPGP---FLPLAARIKQ-AVDLPVFHAGRIRDPAE 299 (343)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH---HCCC-CCCCCCCC---CHHHHHHHHH-HCCCCEEEECCCCCHHH
T ss_conf 999999999996699768996567543322211---0068-76677643---4889999999-72985999799899999
Q ss_pred HHHHHHHC-CCEEHHHHHHHH
Q ss_conf 99999838-885233479999
Q gi|254781020|r 273 ILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 273 v~kAlalG-AdaV~iGr~~l~ 292 (337)
T Consensus 300 ae~~l~~g~~D~V~~gR~~la 320 (343)
T cd04734 300 AEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHCCCCEEHHHHHHHHH
T ss_conf 999998799621697899997