HHsearch alignment for GI: 254781020 and conserved domain: cd04740
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=5e-27 Score=177.50 Aligned_cols=265 Identities=18% Similarity=0.148 Sum_probs=171.8
Q ss_pred EEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHHH----------------------HCCHH
Q ss_conf 29989896256868501266334300025699999999809906-60520221----------------------12866
Q gi|254781020|r 47 SVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRVM----------------------FSDHN 103 (337)
Q Consensus 47 st~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~~----------------------~~~~~ 103 (337)
T Consensus 1 sv~~~Gl~~~nPi~lAA--G-~~~~----~~~~~~~~~~~g~G~v~~~Tvt~~p~~Gn~~PR~~~~~~~~iN~~G~~n~G 73 (296)
T cd04740 1 SVELAGLRLKNPVILAS--G-TFGF----GEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPG 73 (296)
T ss_pred CEEECCEECCCCCEECC--C-CCCC----CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCC
T ss_conf 96889885799878786--7-8998----399999988589638993804703145899981781541167652378886
Q ss_pred HHHHHH-HHH--HCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHH-HCCCCCHHHHHHHHHHHH
Q ss_conf 888999-998--6640123220275212367998999987765089857625320356652-068852430799999999
Q gi|254781020|r 104 AIKSFE-LRQ--YAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQ-PNGNTNFADLSSKIALLS 179 (337)
Q Consensus 104 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~ 179 (337)
T Consensus 74 ~~~~~~~l~~~~~~~~~pvi~si~~~---~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk 150 (296)
T cd04740 74 VEAFLEELLPWLREFGTPVIASIAGS---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 48999878986356897189981689---878999999998864898899978899867636775749999999999998
Q ss_pred HHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC--
Q ss_conf 873997178504786688-99999997699799945888865100123102344323244310634688999998522--
Q gi|254781020|r 180 SAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC-- 256 (337)
Q Consensus 180 ~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~-- 256 (337)
T Consensus 151 ~~~~~Pi~vKlsP~~~~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~-al~~v~~~~~~ 229 (296)
T cd04740 151 KATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPI-ALRMVYQVYKA 229 (296)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHH
T ss_conf 60489669971898000999999999769988999746787663644467552455787686778899-99999999854
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 89879972988888999999983888523347999984146689999999999999999998089857896149
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
T Consensus 230 ~~ipIig~GGI~s~~da~e~i~aGAs~VQi~Ta-i~---~Gp~----~i~~i~~~L~~~l~~~G~~si~e~~G~ 295 (296)
T cd04740 230 VEIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NF---VDPE----AFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HH---CCHH----HHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 588879757979999999999839988872366-74---2927----999999999999998399989995035