HHsearch alignment for GI: 254781020 and conserved domain: cd04741
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.81 E-value=7.5e-18 Score=123.47 Aligned_cols=249 Identities=14% Similarity=0.068 Sum_probs=137.4
Q ss_pred EEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHH---------------------HHCCHHHH
Q ss_conf 99898962568685012663343000256999999998099066-052022---------------------11286688
Q gi|254781020|r 48 VEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRV---------------------MFSDHNAI 105 (337)
Q Consensus 48 t~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~---------------------~~~~~~~~ 105 (337)
T Consensus 1 vt~~Gl~~~NPi~~AaG~~-~----~~--~e~~~~l~~~G~G~v~~kTit~~p~~GNp~PR~~r~~~~~iN~~G~~n~G~ 73 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPW-C----TT--LEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGL 73 (294)
T ss_pred CCCCCCCCCCCCEECCCCC-C----CC--HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCH
T ss_conf 9068982899788745899-9----99--999999997696099928438767779999848855514666444788488
Q ss_pred H-HHH-HHHH---CC--CHHHHHCCCCCCCCCCCCHHHHHHHH--HHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8-999-9986---64--01232202752123679989999877--65089857625320356652068852430799999
Q gi|254781020|r 106 K-SFE-LRQY---AP--HTVLISNLGAVQLNYDFGVQKAHQAV--HVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIA 176 (337)
Q Consensus 106 ~-~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 176 (337)
T Consensus 74 ~~~~~~l~~~~~~~~~~~~pvi~si~g~---~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~ 150 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS---AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLT 150 (294)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCC---CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHH
T ss_conf 9999999998654655587089989998---3679999999986522556479997037898873100139999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHH--HHHHHH---CCCCEEEECCCCCC-CCCCHHHHCCCCC-C-CCHHHHHCCCCHHHH
Q ss_conf 99987399717850478668899--999997---69979994588886-5100123102344-3-232443106346889
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMD--IELGLK---SGIRYFDIAGRGGT-SWSRIESHRDLES-D-IGIVFQDWGIPTPLS 248 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~--~~~a~~---aGad~i~v~~~gG~-~~~~~~~~r~~~~-~-~~~~~~~~gi~~~~a 248 (337)
T Consensus 151 ~v~~~~~~Pv~vKlsP~~~~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p~-a 229 (294)
T cd04741 151 AVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPL-A 229 (294)
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-H
T ss_conf 998415785599728988878999999998657887479998803677633357765643345566666678521589-9
Q ss_pred HH---HHHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99---99852-28987997298888899999998388852334799998414668999999999999999
Q gi|254781020|r 249 LE---MARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 249 l~---~~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~ 314 (337)
T Consensus 230 l~~v~~~~~~~~~~i~Iig~GGI~s~~da~e~i~aGAs~VQv~Tal~~---~Gp~----~~~~I~~~L~e 292 (294)
T cd04741 230 LGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK---EGPK----VFARIEKELED 292 (294)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCHH----HHHHHHHHHHH
T ss_conf 999999999749998799989979999999999839979999799997---0929----99999987996