Query gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 337
No_of_seqs 123 out of 3607
Neff 8.9
Searched_HMMs 39220
Date Mon May 30 04:26:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781020.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02151 IPP_isom_2 isopenten 100.0 0 0 512.6 24.5 333 4-336 1-349 (349)
2 PRK05437 isopentenyl pyrophosp 100.0 0 0 492.4 28.0 334 1-336 5-340 (351)
3 cd02811 IDI-2_FMN Isopentenyl- 100.0 0 0 481.8 28.1 323 5-329 1-326 (326)
4 cd02922 FCB2_FMN Flavocytochro 100.0 0 0 416.1 24.2 290 8-330 17-344 (344)
5 cd03332 LMO_FMN L-Lactate 2-mo 100.0 0 0 414.1 24.2 290 8-330 38-381 (383)
6 PRK11197 lldD L-lactate dehydr 100.0 0 0 412.6 23.8 294 8-336 23-378 (381)
7 cd04737 LOX_like_FMN L-Lactate 100.0 0 0 410.1 23.6 291 8-331 25-350 (351)
8 pfam01070 FMN_dh FMN-dependent 100.0 0 0 404.5 24.7 287 6-330 8-297 (301)
9 cd04736 MDH_FMN Mandelate dehy 100.0 0 0 404.4 23.2 285 8-328 17-360 (361)
10 cd02809 alpha_hydroxyacid_oxid 100.0 0 0 399.2 24.0 280 8-329 17-299 (299)
11 COG1304 idi Isopentenyl diphos 100.0 0 0 369.2 23.8 309 4-336 12-352 (360)
12 KOG0538 consensus 100.0 0 0 368.2 19.8 296 7-335 20-356 (363)
13 TIGR02708 L_lactate_ox L-lacta 100.0 0 0 297.8 16.4 293 8-332 33-359 (368)
14 PRK06843 inositol-5-monophosph 100.0 1.8E-39 4.6E-44 250.7 19.1 280 22-335 8-386 (404)
15 PRK08649 inositol-5-monophosph 100.0 1.7E-39 4.5E-44 250.8 17.1 284 21-335 12-367 (368)
16 cd00381 IMPDH IMPDH: The catal 100.0 1.7E-38 4.2E-43 245.1 20.4 271 24-336 2-325 (325)
17 pfam00478 IMPDH IMP dehydrogen 100.0 6.4E-39 1.6E-43 247.5 17.6 157 165-335 245-455 (467)
18 PTZ00314 inosine-5'-monophosph 100.0 3.6E-38 9.2E-43 243.1 18.0 158 165-336 260-476 (499)
19 TIGR01302 IMP_dehydrog inosine 100.0 3.4E-38 8.7E-43 243.2 16.5 149 167-329 263-476 (476)
20 PRK05567 inositol-5'-monophosp 100.0 1.1E-37 2.7E-42 240.3 17.2 158 165-336 250-461 (486)
21 PRK05458 guanosine 5'-monophos 100.0 8.8E-37 2.2E-41 234.9 19.1 268 23-335 4-315 (326)
22 PRK05096 guanosine 5'-monophos 100.0 1.5E-36 3.7E-41 233.6 18.3 271 24-335 9-335 (347)
23 TIGR01304 IMP_DH_rel_2 IMP deh 100.0 5.6E-38 1.4E-42 242.0 10.9 286 20-334 9-376 (376)
24 PRK07807 inositol-5-monophosph 100.0 1.6E-35 4.1E-40 227.5 16.6 157 165-335 249-463 (479)
25 PRK07107 inositol-5-monophosph 100.0 3.8E-35 9.8E-40 225.3 17.9 159 165-336 264-478 (497)
26 cd02808 GltS_FMN Glutamate syn 100.0 2E-33 5.2E-38 215.1 14.3 305 4-332 17-389 (392)
27 COG0069 GltB Glutamate synthas 100.0 5.5E-33 1.4E-37 212.6 16.3 271 52-336 162-482 (485)
28 PRK08318 dihydropyrimidine deh 100.0 2.5E-31 6.3E-36 202.8 21.7 272 44-332 2-320 (413)
29 PRK07565 dihydroorotate dehydr 100.0 5.3E-31 1.4E-35 200.9 21.4 266 44-330 1-304 (333)
30 cd04739 DHOD_like Dihydroorota 100.0 2.5E-30 6.3E-35 197.0 20.8 265 45-330 1-302 (325)
31 TIGR01037 pyrD_sub1_fam dihydr 100.0 1.3E-31 3.2E-36 204.6 13.8 264 46-330 1-306 (308)
32 pfam01645 Glu_synthase Conserv 100.0 1.5E-31 4E-36 204.0 10.3 262 39-322 52-367 (367)
33 PRK11750 gltB glutamate syntha 100.0 1E-29 2.6E-34 193.3 13.7 287 30-336 837-1173(1483)
34 PRK07259 dihydroorotate dehydr 100.0 4.5E-27 1.2E-31 177.8 21.9 267 46-331 2-299 (301)
35 cd04740 DHOD_1B_like Dihydroor 100.0 5E-27 1.3E-31 177.5 21.0 265 47-330 1-295 (296)
36 COG0167 PyrD Dihydroorotate de 100.0 1.9E-26 4.9E-31 174.0 18.0 273 45-331 1-307 (310)
37 PRK02506 dihydroorotate dehydr 99.9 1.8E-24 4.6E-29 162.4 18.9 271 45-333 1-307 (308)
38 cd02940 DHPD_FMN Dihydropyrimi 99.9 6E-23 1.5E-27 153.5 19.0 248 45-304 1-295 (299)
39 pfam01180 DHO_dh Dihydroorotat 99.9 2.7E-22 6.9E-27 149.6 19.4 252 46-316 2-290 (290)
40 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 2.1E-22 5.4E-27 150.2 18.1 241 48-302 1-284 (289)
41 KOG2550 consensus 99.9 3.5E-23 9E-28 154.8 13.1 151 170-334 278-480 (503)
42 TIGR01306 GMP_reduct_2 guanosi 99.9 7.9E-21 2E-25 141.0 15.3 271 25-334 3-312 (321)
43 KOG0399 consensus 99.9 1.3E-21 3.3E-26 145.6 9.9 279 39-337 942-1276(2142)
44 cd04738 DHOD_2_like Dihydrooro 99.8 1.8E-18 4.6E-23 127.1 21.1 249 39-302 32-321 (327)
45 KOG1436 consensus 99.8 3.6E-19 9.3E-24 131.2 13.1 285 25-331 66-397 (398)
46 cd04741 DHOD_1A_like Dihydroor 99.8 7.5E-18 1.9E-22 123.5 18.6 249 48-314 1-292 (294)
47 PRK05286 dihydroorotate dehydr 99.8 1.6E-17 4E-22 121.6 19.0 258 39-316 38-336 (336)
48 TIGR01305 GMP_reduct_1 guanosi 99.8 1.7E-17 4.5E-22 121.3 14.1 277 22-336 6-335 (343)
49 cd04730 NPD_like 2-Nitropropan 99.7 2.1E-16 5.3E-21 115.0 16.4 192 55-296 1-194 (236)
50 pfam03060 NPD 2-nitropropane d 99.7 3.7E-16 9.4E-21 113.5 14.2 99 174-293 129-227 (330)
51 TIGR03151 enACPred_II putative 99.7 7.7E-16 2E-20 111.6 15.2 187 54-293 9-196 (307)
52 TIGR01036 pyrD_sub2 dihydrooro 99.7 4.6E-16 1.2E-20 113.0 13.7 275 39-331 41-368 (370)
53 PRK10415 tRNA-dihydrouridine s 99.6 1.4E-13 3.4E-18 98.4 18.4 248 49-328 2-280 (321)
54 COG2070 Dioxygenases related t 99.6 3E-14 7.7E-19 102.2 14.8 206 47-294 4-220 (336)
55 KOG1799 consensus 99.6 1.4E-14 3.7E-19 104.1 9.0 272 41-332 98-423 (471)
56 TIGR00737 nifR3_yhdG putative 99.6 3.8E-13 9.6E-18 95.8 16.0 253 50-329 1-296 (336)
57 TIGR01303 IMP_DH_rel_1 IMP deh 99.5 7.1E-14 1.8E-18 100.1 10.8 149 170-332 253-459 (476)
58 COG0042 tRNA-dihydrouridine sy 99.5 8E-12 2E-16 88.0 18.9 252 50-329 4-282 (323)
59 cd02911 arch_FMN Archeal FMN-b 99.4 8.1E-11 2.1E-15 82.1 17.2 122 145-292 97-225 (233)
60 cd02801 DUS_like_FMN Dihydrour 99.4 7.5E-11 1.9E-15 82.3 16.6 206 58-292 1-218 (231)
61 cd04722 TIM_phosphate_binding 99.4 1.2E-10 3E-15 81.1 16.8 196 59-288 1-200 (200)
62 PRK11815 tRNA-dihydrouridine s 99.3 2.5E-10 6.4E-15 79.2 16.3 213 52-291 6-237 (333)
63 cd04743 NPD_PKS 2-Nitropropane 99.3 8E-11 2E-15 82.1 12.6 194 56-293 2-208 (320)
64 pfam01207 Dus Dihydrouridine s 99.3 3.2E-10 8.3E-15 78.5 14.8 204 60-292 1-218 (309)
65 PRK10550 tRNA-dihydrouridine s 99.0 1.1E-07 2.8E-12 63.6 16.9 135 138-291 81-228 (312)
66 KOG2335 consensus 99.0 5.1E-08 1.3E-12 65.6 14.9 205 60-292 22-238 (358)
67 cd04728 ThiG Thiazole synthase 98.8 5.5E-07 1.4E-11 59.5 15.1 205 49-293 2-210 (248)
68 cd04735 OYE_like_4_FMN Old yel 98.8 3.2E-07 8.2E-12 60.9 13.6 168 139-328 151-347 (353)
69 PRK00208 thiG thiazole synthas 98.8 6.9E-07 1.8E-11 58.9 14.9 204 48-292 2-210 (256)
70 PRK13523 NADPH dehydrogenase N 98.8 4.3E-07 1.1E-11 60.1 13.7 154 139-312 149-326 (337)
71 pfam05690 ThiG Thiazole biosyn 98.8 7.3E-07 1.9E-11 58.8 14.1 103 169-292 106-208 (246)
72 pfam00724 Oxidored_FMN NADH:fl 98.7 5E-06 1.3E-10 53.8 18.3 146 138-292 149-321 (336)
73 PRK11840 bifunctional sulfur c 98.7 1.3E-06 3.2E-11 57.4 15.2 225 27-292 55-284 (327)
74 cd04729 NanE N-acetylmannosami 98.7 1.5E-06 3.7E-11 57.0 15.0 178 73-290 26-209 (219)
75 cd02930 DCR_FMN 2,4-dienoyl-Co 98.6 3.3E-05 8.4E-10 49.0 20.0 139 139-292 144-311 (353)
76 cd02803 OYE_like_FMN_family Ol 98.6 3.9E-06 9.8E-11 54.5 14.3 143 139-292 148-316 (327)
77 PRK01130 N-acetylmannosamine-6 98.6 7.3E-06 1.9E-10 52.9 15.4 179 73-290 22-206 (222)
78 CHL00162 thiG thiamin biosynth 98.6 4.2E-06 1.1E-10 54.3 13.5 204 47-293 7-224 (267)
79 cd02932 OYE_YqiM_FMN Old yello 98.5 7E-06 1.8E-10 53.0 14.2 139 139-292 161-325 (336)
80 cd02931 ER_like_FMN Enoate red 98.5 7E-06 1.8E-10 53.0 13.8 144 138-292 156-340 (382)
81 PRK08255 salicylyl-CoA 5-hydro 98.5 7.8E-06 2E-10 52.7 14.0 139 139-292 563-727 (770)
82 COG2022 ThiG Uncharacterized e 98.5 1.8E-05 4.6E-10 50.6 15.0 212 45-293 5-217 (262)
83 cd04734 OYE_like_3_FMN Old yel 98.5 1.9E-05 5E-10 50.4 14.8 146 139-292 148-320 (343)
84 cd02929 TMADH_HD_FMN Trimethyl 98.4 0.0001 2.6E-09 46.2 18.2 142 138-292 156-324 (370)
85 COG1902 NemA NADH:flavin oxido 98.4 1.9E-05 5E-10 50.4 14.2 141 138-292 155-323 (363)
86 cd04733 OYE_like_2_FMN Old yel 98.4 1.7E-05 4.3E-10 50.7 13.7 146 139-292 156-327 (338)
87 pfam04131 NanE Putative N-acet 98.4 4.2E-05 1.1E-09 48.4 15.3 122 133-290 53-176 (192)
88 pfam00218 IGPS Indole-3-glycer 98.4 1.4E-05 3.5E-10 51.2 11.8 124 134-293 121-244 (254)
89 PRK06552 keto-hydroxyglutarate 98.3 5.2E-05 1.3E-09 47.9 14.4 136 140-293 33-189 (209)
90 PRK09140 2-dehydro-3-deoxy-6-p 98.3 7.5E-05 1.9E-09 46.9 14.3 135 140-293 30-185 (206)
91 PRK00278 trpC indole-3-glycero 98.3 9.1E-05 2.3E-09 46.4 14.5 126 132-293 121-246 (261)
92 cd02933 OYE_like_FMN Old yello 98.2 9.6E-05 2.4E-09 46.3 14.0 134 138-292 158-319 (338)
93 cd00331 IGPS Indole-3-glycerol 98.2 0.00011 2.8E-09 46.0 13.9 126 132-293 82-207 (217)
94 PRK07455 keto-hydroxyglutarate 98.2 6.2E-05 1.6E-09 47.4 12.5 135 138-291 31-185 (210)
95 COG0134 TrpC Indole-3-glycerol 98.2 0.00013 3.4E-09 45.4 13.5 95 175-293 148-242 (254)
96 PRK13129 consensus 98.2 0.00046 1.2E-08 42.3 16.1 159 128-316 106-265 (267)
97 PRK13597 imidazole glycerol ph 98.1 6E-05 1.5E-09 47.5 10.5 74 198-293 156-231 (252)
98 pfam01081 Aldolase KDPG and KH 98.1 0.00018 4.5E-09 44.7 12.4 42 249-291 139-180 (196)
99 PRK10605 N-ethylmaleimide redu 98.0 0.00029 7.3E-09 43.5 12.7 131 139-292 166-326 (362)
100 PRK13585 1-(5-phosphoribosyl)- 98.0 0.00011 2.9E-09 45.9 10.2 74 198-293 152-227 (240)
101 pfam01791 DeoC DeoC/LacD famil 98.0 0.00031 7.9E-09 43.3 12.4 131 135-292 78-230 (231)
102 PRK13122 consensus 98.0 0.0012 3.1E-08 39.8 15.5 158 124-313 82-241 (242)
103 PRK00507 deoxyribose-phosphate 97.9 0.00029 7.3E-09 43.5 11.5 125 135-289 78-210 (221)
104 pfam00977 His_biosynth Histidi 97.9 0.00011 2.8E-09 46.0 9.3 37 256-292 189-225 (229)
105 COG0800 Eda 2-keto-3-deoxy-6-p 97.9 0.00085 2.2E-08 40.7 13.7 158 138-311 31-208 (211)
106 PRK03220 consensus 97.9 0.00013 3.4E-09 45.5 9.5 75 197-293 162-238 (257)
107 PRK13126 consensus 97.9 0.00082 2.1E-08 40.8 13.5 121 177-320 117-237 (237)
108 PRK13802 bifunctional indole-3 97.9 0.00095 2.4E-08 40.4 13.6 233 9-292 7-245 (695)
109 PRK07114 keto-hydroxyglutarate 97.9 0.0015 3.9E-08 39.2 15.8 43 249-291 150-193 (223)
110 PRK07028 bifunctional hexulose 97.9 0.0016 4.1E-08 39.1 16.3 197 94-328 34-244 (429)
111 PRK00748 1-(5-phosphoribosyl)- 97.9 0.00024 6.1E-09 44.0 10.2 88 197-310 148-240 (241)
112 cd04732 HisA HisA. Phosphorib 97.9 0.00018 4.6E-09 44.7 9.5 75 197-293 149-225 (234)
113 cd00945 Aldolase_Class_I Class 97.9 0.0016 4.2E-08 39.1 14.2 125 135-287 69-201 (201)
114 pfam04898 Glu_syn_central Glut 97.9 0.00019 4.8E-09 44.6 9.4 115 198-333 147-281 (288)
115 PRK01033 imidazole glycerol ph 97.8 5.8E-05 1.5E-09 47.6 6.6 37 257-293 195-232 (253)
116 PRK02621 consensus 97.8 0.0005 1.3E-08 42.1 11.2 37 257-293 197-234 (254)
117 cd00959 DeoC 2-deoxyribose-5-p 97.8 0.00061 1.6E-08 41.6 11.6 123 134-285 72-201 (203)
118 PRK13957 indole-3-glycerol-pho 97.8 0.0022 5.6E-08 38.3 14.6 125 132-293 112-236 (247)
119 PRK05211 consensus 97.8 0.00055 1.4E-08 41.9 11.0 37 257-293 191-228 (248)
120 PRK02145 consensus 97.8 0.00059 1.5E-08 41.7 11.0 36 257-292 200-236 (257)
121 PRK02083 imidazole glycerol ph 97.8 0.00061 1.6E-08 41.6 11.0 74 198-293 157-233 (253)
122 PRK13117 consensus 97.8 0.0024 6.2E-08 38.0 16.9 163 125-317 102-267 (268)
123 cd04731 HisF The cyclase subun 97.8 0.00056 1.4E-08 41.8 10.5 37 257-293 192-229 (243)
124 PRK13127 consensus 97.8 0.0026 6.7E-08 37.9 16.4 165 124-318 94-260 (262)
125 PRK06857 consensus 97.8 0.0014 3.5E-08 39.5 12.5 133 140-291 32-184 (209)
126 cd00452 KDPG_aldolase KDPG and 97.8 0.0012 3.1E-08 39.8 12.2 74 192-291 102-175 (190)
127 PRK08104 consensus 97.7 0.0018 4.7E-08 38.7 13.0 75 192-291 113-187 (212)
128 PRK08904 consensus 97.7 0.002 5E-08 38.6 12.8 39 252-291 144-182 (207)
129 COG0274 DeoC Deoxyribose-phosp 97.7 0.00088 2.3E-08 40.6 11.0 120 143-289 88-214 (228)
130 CHL00200 trpA tryptophan synth 97.7 0.0031 7.8E-08 37.5 15.0 161 125-315 99-260 (263)
131 PRK01659 consensus 97.7 0.0008 2E-08 40.9 10.5 37 257-293 196-233 (252)
132 PRK08782 consensus 97.7 0.0035 9.1E-08 37.1 16.2 137 139-291 36-189 (219)
133 TIGR01949 AroFGH_arch predicte 97.7 0.00062 1.6E-08 41.5 9.5 132 143-309 101-248 (259)
134 PRK09427 bifunctional indole-3 97.7 0.0021 5.4E-08 38.4 12.3 122 135-293 124-245 (459)
135 PRK05283 deoxyribose-phosphate 97.6 0.0037 9.5E-08 36.9 12.9 129 134-284 87-227 (258)
136 PRK04128 1-(5-phosphoribosyl)- 97.6 0.0007 1.8E-08 41.2 9.0 41 253-293 177-217 (228)
137 PRK13587 1-(5-phosphoribosyl)- 97.6 0.00074 1.9E-08 41.1 8.9 73 197-291 151-225 (234)
138 PRK11750 gltB glutamate syntha 97.5 0.00082 2.1E-08 40.8 8.7 115 198-333 600-733 (1483)
139 PRK06512 thiamine-phosphate py 97.5 0.0018 4.6E-08 38.8 10.3 116 175-311 100-215 (221)
140 TIGR03572 WbuZ glycosyl amidat 97.5 0.00051 1.3E-08 42.0 7.3 36 257-292 196-232 (232)
141 PRK13139 consensus 97.5 0.0065 1.7E-07 35.5 15.0 154 124-308 99-253 (254)
142 pfam04481 DUF561 Protein of un 97.5 0.007 1.8E-07 35.3 14.4 143 135-292 72-219 (243)
143 COG0107 HisF Imidazoleglycerol 97.4 0.0071 1.8E-07 35.3 12.6 90 198-321 159-251 (256)
144 PRK06015 keto-hydroxyglutarate 97.4 0.0055 1.4E-07 36.0 11.9 39 252-291 149-187 (212)
145 PRK05718 keto-hydroxyglutarate 97.4 0.0039 9.9E-08 36.8 11.1 38 252-291 149-187 (212)
146 PRK07226 fructose-bisphosphate 97.4 0.0078 2E-07 35.1 12.9 140 143-320 104-265 (266)
147 PRK00830 consensus 97.4 0.0012 2.9E-08 39.9 8.2 76 196-293 175-253 (273)
148 PRK02747 consensus 97.4 0.0019 4.8E-08 38.7 9.1 37 257-293 199-236 (257)
149 PRK13115 consensus 97.4 0.0084 2.1E-07 34.9 15.2 161 125-316 107-268 (269)
150 cd04723 HisA_HisF Phosphoribos 97.4 0.0027 6.9E-08 37.7 9.9 37 257-293 188-224 (233)
151 cd04742 NPD_FabD 2-Nitropropan 97.4 0.0058 1.5E-07 35.8 11.4 82 194-289 163-250 (418)
152 PRK13116 consensus 97.3 0.0099 2.5E-07 34.4 15.6 143 125-297 102-245 (278)
153 PRK13140 consensus 97.3 0.01 2.6E-07 34.3 15.5 160 124-313 97-256 (257)
154 PRK13125 trpA tryptophan synth 97.3 0.011 2.7E-07 34.3 17.1 152 133-313 92-244 (247)
155 cd04747 OYE_like_5_FMN Old yel 97.3 0.011 2.8E-07 34.2 12.6 135 139-292 151-333 (361)
156 PRK04281 consensus 97.3 0.0025 6.4E-08 38.0 8.6 36 257-292 197-233 (254)
157 PRK13307 bifunctional formalde 97.3 0.012 3.1E-07 33.9 12.0 146 172-330 214-389 (392)
158 COG3010 NanE Putative N-acetyl 97.2 0.013 3.3E-07 33.7 15.3 81 191-291 131-213 (229)
159 TIGR00737 nifR3_yhdG putative 97.2 0.0043 1.1E-07 36.6 9.2 123 93-223 116-248 (336)
160 PRK13124 consensus 97.1 0.018 4.5E-07 33.0 15.2 158 128-317 96-255 (257)
161 TIGR00007 TIGR00007 phosphorib 97.1 0.0044 1.1E-07 36.5 8.2 80 192-292 149-233 (241)
162 COG0106 HisA Phosphoribosylfor 97.1 0.011 2.7E-07 34.3 10.1 77 196-292 149-226 (241)
163 PRK04180 pyridoxine biosynthes 97.1 0.0083 2.1E-07 34.9 9.6 77 248-324 194-282 (293)
164 PRK08227 aldolase; Validated 97.0 0.023 5.8E-07 32.3 11.4 130 143-309 132-273 (291)
165 COG0159 TrpA Tryptophan syntha 97.0 0.023 5.9E-07 32.3 17.2 157 127-314 104-261 (265)
166 PTZ00314 inosine-5'-monophosph 96.9 0.013 3.2E-07 33.8 9.5 228 23-287 16-307 (499)
167 TIGR01182 eda 2-dehydro-3-deox 96.9 0.01 2.7E-07 34.3 9.0 55 143-212 31-86 (205)
168 pfam00290 Trp_syntA Tryptophan 96.9 0.027 6.8E-07 31.9 17.5 161 125-316 94-257 (258)
169 cd04727 pdxS PdxS is a subunit 96.9 0.018 4.6E-07 32.9 10.0 76 248-324 185-273 (283)
170 pfam00478 IMPDH IMP dehydrogen 96.9 0.0046 1.2E-07 36.4 6.8 228 24-287 3-292 (467)
171 PRK13586 1-(5-phosphoribosyl)- 96.8 0.012 3.2E-07 33.9 8.9 35 257-292 188-222 (231)
172 PRK02145 consensus 96.8 0.0087 2.2E-07 34.8 7.9 42 172-215 190-232 (257)
173 PRK13112 consensus 96.8 0.033 8.5E-07 31.3 15.9 162 124-316 102-270 (279)
174 cd02812 PcrB_like PcrB_like pr 96.8 0.0067 1.7E-07 35.5 7.0 45 247-291 164-208 (219)
175 PRK13134 consensus 96.7 0.035 9E-07 31.2 14.1 154 125-310 103-256 (257)
176 COG0352 ThiE Thiamine monophos 96.7 0.037 9.3E-07 31.1 12.4 115 175-310 94-208 (211)
177 PRK13135 consensus 96.7 0.038 9.6E-07 31.0 15.3 151 130-313 106-263 (267)
178 TIGR00742 yjbN TIM-barrel prot 96.7 0.038 9.6E-07 31.0 12.4 191 115-317 53-278 (326)
179 PRK06843 inositol-5-monophosph 96.7 0.023 5.7E-07 32.3 9.4 68 197-287 155-222 (404)
180 PRK02747 consensus 96.7 0.011 2.7E-07 34.3 7.7 42 172-215 189-231 (257)
181 TIGR00736 nifR3_rel_arch TIM-b 96.7 0.028 7E-07 31.8 9.7 128 144-293 93-229 (234)
182 PRK13114 consensus 96.7 0.041 1E-06 30.8 15.5 155 128-316 101-258 (266)
183 PRK05567 inositol-5'-monophosp 96.7 0.0075 1.9E-07 35.2 6.6 229 22-287 7-297 (486)
184 PRK01659 consensus 96.7 0.011 2.8E-07 34.2 7.5 42 172-215 186-228 (252)
185 PRK13137 consensus 96.6 0.045 1.2E-06 30.6 15.1 154 125-315 108-263 (266)
186 COG1646 Predicted phosphate-bi 96.6 0.033 8.4E-07 31.4 9.6 40 252-291 185-224 (240)
187 pfam00977 His_biosynth Histidi 96.6 0.023 5.8E-07 32.3 8.5 42 172-215 180-221 (229)
188 PRK00043 thiE thiamine-phospha 96.6 0.049 1.2E-06 30.4 11.5 100 175-293 93-192 (210)
189 PRK08385 nicotinate-nucleotide 96.6 0.044 1.1E-06 30.6 9.9 98 166-291 165-264 (279)
190 PRK13586 1-(5-phosphoribosyl)- 96.6 0.037 9.3E-07 31.1 9.5 32 259-290 73-104 (231)
191 cd04724 Tryptophan_synthase_al 96.6 0.049 1.2E-06 30.4 15.7 159 124-313 83-242 (242)
192 PRK10415 tRNA-dihydrouridine s 96.5 0.049 1.3E-06 30.4 10.4 80 134-221 151-232 (321)
193 PRK13119 consensus 96.5 0.05 1.3E-06 30.3 16.6 160 125-316 100-260 (261)
194 COG0214 SNZ1 Pyridoxine biosyn 96.5 0.051 1.3E-06 30.2 10.2 44 248-292 197-242 (296)
195 PRK13118 consensus 96.5 0.051 1.3E-06 30.2 16.1 161 125-317 102-265 (269)
196 COG0516 GuaB IMP dehydrogenase 96.5 0.0016 4.1E-08 39.1 2.4 66 24-97 15-82 (170)
197 PRK02621 consensus 96.5 0.015 3.7E-07 33.5 7.3 42 172-215 187-229 (254)
198 PRK13113 consensus 96.5 0.053 1.4E-06 30.1 16.9 158 125-313 102-261 (263)
199 PRK13123 consensus 96.5 0.053 1.4E-06 30.1 17.3 158 124-313 96-255 (256)
200 PRK13585 1-(5-phosphoribosyl)- 96.5 0.015 3.8E-07 33.4 7.1 42 172-215 181-222 (240)
201 PRK00748 1-(5-phosphoribosyl)- 96.5 0.017 4.3E-07 33.1 7.3 42 172-215 178-222 (241)
202 cd00381 IMPDH IMPDH: The catal 96.4 0.059 1.5E-06 29.9 9.9 80 135-218 147-230 (325)
203 PRK13597 imidazole glycerol ph 96.4 0.026 6.6E-07 32.0 7.9 42 172-215 185-226 (252)
204 PRK04281 consensus 96.4 0.021 5.3E-07 32.5 7.4 42 172-215 187-229 (254)
205 cd00958 DhnA Class I fructose- 96.4 0.063 1.6E-06 29.7 11.3 129 143-306 87-231 (235)
206 TIGR01302 IMP_dehydrog inosine 96.4 0.021 5.3E-07 32.6 7.4 228 24-287 2-308 (476)
207 cd04731 HisF The cyclase subun 96.4 0.012 3E-07 34.0 6.0 42 172-215 182-224 (243)
208 PRK03220 consensus 96.3 0.034 8.7E-07 31.3 8.4 42 172-215 192-233 (257)
209 PRK03170 dihydrodipicolinate s 96.3 0.025 6.4E-07 32.1 7.6 115 137-289 88-207 (292)
210 cd04729 NanE N-acetylmannosami 96.3 0.067 1.7E-06 29.6 10.9 76 133-215 132-207 (219)
211 TIGR00735 hisF imidazoleglycer 96.3 0.0047 1.2E-07 36.4 3.8 54 256-321 255-309 (312)
212 PRK13121 consensus 96.3 0.069 1.8E-06 29.5 17.0 157 128-316 105-263 (265)
213 PRK13111 trpA tryptophan synth 96.3 0.07 1.8E-06 29.4 15.8 158 127-315 95-253 (256)
214 cd04723 HisA_HisF Phosphoribos 96.3 0.024 6E-07 32.2 7.2 42 172-215 178-219 (233)
215 pfam01729 QRPTase_C Quinolinat 96.2 0.074 1.9E-06 29.3 10.5 93 169-290 64-158 (169)
216 PRK02083 imidazole glycerol ph 96.2 0.025 6.5E-07 32.0 7.2 43 172-216 186-229 (253)
217 PRK13131 consensus 96.2 0.078 2E-06 29.2 17.4 144 124-297 94-237 (257)
218 cd00952 CHBPH_aldolase Trans-o 96.2 0.054 1.4E-06 30.1 8.8 62 137-205 95-161 (309)
219 TIGR03128 RuMP_HxlA 3-hexulose 96.2 0.083 2.1E-06 29.0 15.2 149 107-293 43-192 (206)
220 PRK04169 geranylgeranylglycery 96.2 0.0074 1.9E-07 35.2 4.1 45 247-291 174-218 (229)
221 PRK07695 transcriptional regul 96.2 0.083 2.1E-06 29.0 11.8 115 175-315 86-200 (202)
222 KOG2333 consensus 96.1 0.086 2.2E-06 28.9 12.4 202 59-291 267-489 (614)
223 PRK05211 consensus 96.1 0.036 9.1E-07 31.2 7.5 42 172-215 181-223 (248)
224 TIGR03572 WbuZ glycosyl amidat 96.1 0.033 8.4E-07 31.4 7.3 31 259-289 75-105 (232)
225 PRK01033 imidazole glycerol ph 96.1 0.035 8.8E-07 31.2 7.3 72 133-215 153-227 (253)
226 cd04726 KGPDC_HPS 3-Keto-L-gul 96.1 0.088 2.3E-06 28.8 9.3 44 248-293 149-192 (202)
227 PRK00830 consensus 96.0 0.027 6.9E-07 31.9 6.6 42 172-215 206-248 (273)
228 cd01568 QPRTase_NadC Quinolina 96.0 0.094 2.4E-06 28.7 10.8 93 169-291 165-259 (269)
229 pfam00701 DHDPS Dihydrodipicol 96.0 0.042 1.1E-06 30.7 7.3 116 136-289 87-207 (289)
230 COG1830 FbaB DhnA-type fructos 95.9 0.11 2.7E-06 28.4 12.4 132 143-309 108-257 (265)
231 PRK07428 nicotinate-nucleotide 95.9 0.11 2.7E-06 28.4 9.7 94 170-292 178-273 (285)
232 PRK07107 inositol-5-monophosph 95.9 0.046 1.2E-06 30.5 7.2 231 21-287 7-312 (497)
233 COG0107 HisF Imidazoleglycerol 95.9 0.089 2.3E-06 28.8 8.5 40 172-213 188-228 (256)
234 cd00950 DHDPS Dihydrodipicolin 95.8 0.077 2E-06 29.2 8.1 115 136-288 86-205 (284)
235 PRK07807 inositol-5-monophosph 95.8 0.044 1.1E-06 30.6 6.7 225 24-287 13-296 (479)
236 cd00408 DHDPS-like Dihydrodipi 95.8 0.08 2E-06 29.1 8.0 117 136-289 83-203 (281)
237 COG0269 SgbH 3-hexulose-6-phos 95.8 0.12 3.1E-06 28.0 9.8 176 95-312 34-212 (217)
238 PRK03512 thiamine-phosphate py 95.7 0.13 3.2E-06 27.9 11.7 101 175-293 92-192 (211)
239 pfam01884 PcrB PcrB family. Th 95.7 0.013 3.3E-07 33.8 3.8 41 251-291 175-215 (231)
240 PRK03620 5-dehydro-4-deoxygluc 95.7 0.13 3.4E-06 27.8 9.0 170 78-287 26-205 (296)
241 TIGR01858 tag_bisphos_ald clas 95.7 0.14 3.5E-06 27.7 9.2 77 134-215 155-231 (282)
242 TIGR03249 KdgD 5-dehydro-4-deo 95.6 0.11 2.8E-06 28.3 8.2 116 136-288 90-210 (296)
243 cd04732 HisA HisA. Phosphorib 95.6 0.077 2E-06 29.2 7.4 42 172-215 179-220 (234)
244 cd00951 KDGDH 5-dehydro-4-deox 95.6 0.12 2.9E-06 28.2 8.3 116 137-288 86-205 (289)
245 PRK05848 nicotinate-nucleotide 95.6 0.15 3.8E-06 27.5 10.6 95 169-291 165-260 (272)
246 PRK04147 N-acetylneuraminate l 95.6 0.13 3.3E-06 27.9 8.4 115 136-289 90-209 (294)
247 PRK08999 hypothetical protein; 95.6 0.047 1.2E-06 30.5 6.2 82 192-291 231-312 (312)
248 TIGR01304 IMP_DH_rel_2 IMP deh 95.5 0.11 2.9E-06 28.2 8.1 98 169-287 120-218 (376)
249 PTZ00170 D-ribulose-5-phosphat 95.5 0.16 4E-06 27.4 14.1 137 140-316 81-222 (224)
250 cd01572 QPRTase Quinolinate ph 95.4 0.17 4.2E-06 27.2 11.5 91 169-291 166-258 (268)
251 PRK13132 consensus 95.4 0.17 4.3E-06 27.2 16.7 151 123-306 91-243 (246)
252 COG0329 DapA Dihydrodipicolina 95.4 0.12 3.1E-06 28.0 7.9 190 57-288 9-210 (299)
253 pfam01207 Dus Dihydrouridine s 95.4 0.17 4.4E-06 27.1 9.8 74 134-215 140-214 (309)
254 PRK13138 consensus 95.4 0.17 4.4E-06 27.1 15.3 164 124-317 97-264 (264)
255 PRK13813 orotidine 5'-phosphat 95.3 0.19 4.8E-06 26.9 8.7 80 199-312 131-212 (215)
256 PRK04128 1-(5-phosphoribosyl)- 95.2 0.098 2.5E-06 28.6 7.0 25 191-215 188-212 (228)
257 pfam04131 NanE Putative N-acet 95.2 0.17 4.2E-06 27.2 8.1 76 132-216 100-175 (192)
258 PRK06096 molybdenum transport 95.2 0.2 5E-06 26.8 10.2 93 169-290 174-267 (284)
259 TIGR01768 GGGP-family geranylg 95.1 0.029 7.4E-07 31.7 4.0 44 246-289 177-226 (242)
260 cd00564 TMP_TenI Thiamine mono 95.1 0.2 5.2E-06 26.7 9.8 100 175-293 85-184 (196)
261 PRK01130 N-acetylmannosamine-6 95.1 0.21 5.4E-06 26.6 10.6 77 132-216 127-205 (222)
262 PRK05742 nicotinate-nucleotide 95.1 0.21 5.5E-06 26.6 11.1 89 170-290 175-264 (277)
263 TIGR00078 nadC nicotinate-nucl 95.1 0.22 5.5E-06 26.6 9.9 95 168-290 169-264 (276)
264 PRK06512 thiamine-phosphate py 95.0 0.13 3.2E-06 27.9 7.0 74 133-215 120-193 (221)
265 TIGR01919 hisA-trpF bifunction 95.0 0.22 5.7E-06 26.5 8.3 47 244-291 183-232 (246)
266 PRK13587 1-(5-phosphoribosyl)- 94.9 0.15 3.7E-06 27.6 7.1 75 132-215 148-222 (234)
267 cd00954 NAL N-Acetylneuraminic 94.9 0.23 6E-06 26.4 8.0 116 136-289 87-208 (288)
268 TIGR02814 pfaD_fam PfaD family 94.8 0.12 3.1E-06 28.1 6.5 80 195-288 169-256 (449)
269 PRK07896 nicotinate-nucleotide 94.8 0.25 6.4E-06 26.2 10.2 93 170-290 184-276 (288)
270 KOG4201 consensus 94.7 0.2 5.2E-06 26.7 7.3 94 177-294 180-273 (289)
271 KOG1606 consensus 94.6 0.24 6.1E-06 26.3 7.5 143 179-328 121-290 (296)
272 PRK08185 hypothetical protein; 94.5 0.3 7.7E-06 25.7 12.8 112 194-324 148-279 (283)
273 pfam09370 TIM-br_sig_trns TIM- 94.0 0.38 9.7E-06 25.1 11.0 172 116-314 81-267 (268)
274 PRK13133 consensus 93.8 0.42 1.1E-05 24.9 13.9 157 127-312 106-266 (267)
275 PRK02615 thiamine-phosphate py 93.8 0.42 1.1E-05 24.9 11.2 99 175-293 228-326 (345)
276 TIGR00735 hisF imidazoleglycer 93.7 0.23 5.8E-06 26.5 6.0 37 257-293 88-135 (312)
277 cd02812 PcrB_like PcrB_like pr 93.7 0.21 5.4E-06 26.6 5.7 45 170-216 161-206 (219)
278 PRK13306 ulaD 3-keto-L-gulonat 93.6 0.46 1.2E-05 24.7 17.3 210 56-314 2-213 (216)
279 PRK06559 nicotinate-nucleotide 93.6 0.46 1.2E-05 24.6 11.3 90 170-291 182-273 (290)
280 pfam04309 G3P_antiterm Glycero 93.5 0.47 1.2E-05 24.6 8.1 42 247-289 129-170 (174)
281 PRK09722 allulose-6-phosphate 93.5 0.48 1.2E-05 24.5 14.7 149 134-319 70-224 (227)
282 PRK06852 aldolase; Validated 93.3 0.52 1.3E-05 24.3 7.2 131 133-293 120-271 (303)
283 PRK04169 geranylgeranylglycery 93.2 0.3 7.7E-06 25.7 5.9 43 172-216 173-216 (229)
284 cd01573 modD_like ModD; Quinol 93.2 0.54 1.4E-05 24.2 10.3 90 172-291 171-261 (272)
285 TIGR01769 GGGP geranylgeranylg 93.2 0.54 1.4E-05 24.2 12.4 143 133-285 14-210 (212)
286 PRK00507 deoxyribose-phosphate 92.9 0.19 4.8E-06 26.9 4.5 171 22-212 32-206 (221)
287 TIGR02317 prpB methylisocitrat 92.9 0.41 1.1E-05 24.9 6.2 12 200-211 168-179 (287)
288 PRK13136 consensus 92.8 0.61 1.5E-05 23.9 14.6 141 137-308 107-249 (253)
289 pfam02581 TMP-TENI Thiamine mo 92.4 0.69 1.8E-05 23.6 8.3 94 175-288 85-178 (180)
290 COG0157 NadC Nicotinate-nucleo 92.3 0.69 1.8E-05 23.6 10.1 93 170-291 173-266 (280)
291 PRK06543 nicotinate-nucleotide 92.0 0.76 1.9E-05 23.3 11.0 88 170-289 178-267 (281)
292 TIGR00693 thiE thiamine-phosph 91.9 0.78 2E-05 23.3 7.7 101 175-293 95-200 (210)
293 TIGR00419 tim triosephosphate 91.7 0.069 1.8E-06 29.5 1.1 41 253-293 203-243 (244)
294 KOG2334 consensus 91.6 0.86 2.2E-05 23.0 10.1 127 147-291 108-246 (477)
295 PRK00230 orotidine 5'-phosphat 91.4 0.42 1.1E-05 24.9 4.8 63 199-292 141-213 (231)
296 PRK13120 consensus 91.3 0.91 2.3E-05 22.9 15.5 160 125-316 106-275 (285)
297 cd00516 PRTase_typeII Phosphor 91.0 0.98 2.5E-05 22.7 9.6 98 172-292 169-272 (281)
298 COG4981 Enoyl reductase domain 90.9 1 2.5E-05 22.6 10.3 223 42-292 20-258 (717)
299 PRK09016 quinolinate phosphori 90.9 1 2.6E-05 22.6 11.1 88 170-289 194-282 (296)
300 COG0036 Rpe Pentose-5-phosphat 90.9 1 2.6E-05 22.6 11.8 137 135-313 74-218 (220)
301 PRK12376 putative translaldola 90.7 1 2.7E-05 22.5 9.8 79 243-322 158-236 (238)
302 pfam03437 BtpA BtpA family. Th 90.7 1.1 2.7E-05 22.5 7.4 87 197-308 161-252 (254)
303 PRK06106 nicotinate-nucleotide 90.3 1.1 2.9E-05 22.3 11.3 89 170-290 177-267 (281)
304 PRK04302 triosephosphate isome 90.2 0.28 7E-06 25.9 3.0 44 250-293 165-208 (223)
305 PRK08072 nicotinate-nucleotide 89.6 1.3 3.3E-05 22.0 11.3 90 169-290 172-263 (277)
306 PRK07998 gatY putative fructos 89.3 1.4 3.5E-05 21.8 11.4 110 194-323 152-279 (283)
307 PRK13305 sgbH 3-keto-L-gulonat 89.1 1.4 3.6E-05 21.8 17.6 210 56-314 2-213 (220)
308 PRK12857 putative aldolase; Re 88.8 1.5 3.8E-05 21.6 11.1 111 194-323 154-282 (284)
309 TIGR00343 TIGR00343 pyridoxine 88.6 0.25 6.4E-06 26.2 1.8 73 256-328 201-286 (298)
310 PRK08610 fructose-bisphosphate 88.0 1.7 4.2E-05 21.4 11.6 110 194-323 155-283 (286)
311 cd00953 KDG_aldolase KDG (2-ke 88.0 1.7 4.3E-05 21.3 7.4 116 136-289 82-201 (279)
312 PRK05581 ribulose-phosphate 3- 87.9 1.7 4.3E-05 21.3 13.0 133 142-312 81-218 (220)
313 PRK12656 fructose-6-phosphate 87.9 1.7 4.3E-05 21.3 13.9 112 172-308 95-213 (222)
314 PRK06978 nicotinate-nucleotide 87.8 1.7 4.4E-05 21.2 10.8 88 170-289 185-273 (288)
315 PRK08883 ribulose-phosphate 3- 87.5 1.8 4.6E-05 21.2 14.1 137 138-313 74-216 (220)
316 PRK06806 fructose-bisphosphate 87.3 1.8 4.7E-05 21.1 11.9 111 193-323 151-279 (281)
317 COG2876 AroA 3-deoxy-D-arabino 86.9 1.9 4.9E-05 21.0 10.3 122 180-318 149-283 (286)
318 cd00947 TBP_aldolase_IIB Tagat 86.3 2.1 5.3E-05 20.8 11.6 111 193-322 146-275 (276)
319 TIGR01361 DAHP_synth_Bsub phos 86.2 2.1 5.4E-05 20.7 7.0 89 180-286 129-229 (262)
320 PRK06801 hypothetical protein; 86.0 2.2 5.5E-05 20.7 11.5 110 194-323 155-284 (286)
321 TIGR00875 talC transaldolase, 86.0 2.2 5.5E-05 20.7 8.5 99 194-310 112-214 (216)
322 PRK02261 methylaspartate mutas 85.9 2.2 5.6E-05 20.6 11.1 109 172-313 20-135 (137)
323 PRK07709 fructose-bisphosphate 85.7 2.2 5.7E-05 20.6 11.1 110 194-323 155-283 (285)
324 PRK12737 gatY tagatose-bisphos 85.4 2.3 5.9E-05 20.5 11.6 110 194-323 154-282 (284)
325 pfam01116 F_bP_aldolase Fructo 85.2 2.4 6E-05 20.5 11.6 214 77-323 30-281 (283)
326 PRK09195 gatY tagatose-bisphos 83.6 2.8 7.1E-05 20.0 11.5 110 194-323 154-282 (284)
327 COG0191 Fba Fructose/tagatose 83.4 2.8 7.3E-05 20.0 13.0 112 194-323 155-284 (286)
328 KOG3111 consensus 83.1 2.9 7.4E-05 19.9 7.5 128 143-314 85-219 (224)
329 COG3684 LacD Tagatose-1,6-bisp 82.3 3.1 8E-05 19.7 7.5 157 137-330 116-296 (306)
330 KOG0134 consensus 82.2 3.2 8.1E-05 19.7 11.1 149 137-292 179-353 (400)
331 PRK08005 ribulose-phosphate 3- 82.2 3.2 8.1E-05 19.7 11.2 116 141-293 77-197 (210)
332 PRK11320 prpB 2-methylisocitra 81.8 3.3 8.3E-05 19.6 7.9 69 198-294 170-241 (292)
333 PRK12399 tagatose 1,6-diphosph 81.5 1.1 2.8E-05 22.4 2.3 170 141-329 114-311 (324)
334 PRK08745 ribulose-phosphate 3- 81.1 3.5 8.9E-05 19.5 13.9 124 136-292 76-204 (223)
335 PRK12738 kbaY tagatose-bisphos 81.0 3.5 8.9E-05 19.4 10.8 111 194-323 154-282 (286)
336 PRK04161 tagatose 1,6-diphosph 80.5 1.2 3E-05 22.2 2.1 171 141-329 116-313 (326)
337 PRK01362 putative translaldola 79.1 4 0.0001 19.1 14.0 115 173-309 92-210 (214)
338 PRK10693 response regulator of 78.3 4.3 0.00011 18.9 10.5 23 259-281 80-102 (337)
339 TIGR01108 oadA oxaloacetate de 77.7 4.5 0.00011 18.8 8.0 54 171-227 181-242 (616)
340 cd00956 Transaldolase_FSA Tran 76.8 4.7 0.00012 18.7 10.4 111 172-307 91-208 (211)
341 pfam00834 Ribul_P_3_epim Ribul 75.9 5 0.00013 18.5 10.5 117 142-291 77-198 (201)
342 TIGR00381 cdhD CO dehydrogenas 75.7 5.1 0.00013 18.5 6.4 70 132-205 144-215 (401)
343 PRK12653 fructose-6-phosphate 75.7 5.1 0.00013 18.5 13.2 124 172-324 93-220 (220)
344 COG2513 PrpB PEP phosphonomuta 75.6 5.1 0.00013 18.5 7.1 99 168-293 132-240 (289)
345 cd00429 RPE Ribulose-5-phospha 75.4 5.2 0.00013 18.5 12.1 125 134-292 70-199 (211)
346 PRK12655 fructose-6-phosphate 75.2 5.2 0.00013 18.4 12.3 126 172-323 93-219 (220)
347 COG0135 TrpF Phosphoribosylant 74.5 5.5 0.00014 18.3 11.9 122 128-289 58-185 (208)
348 cd00377 ICL_PEPM Members of th 73.6 5.7 0.00015 18.2 6.6 67 199-294 165-233 (243)
349 PRK12858 tagatose 1,6-diphosph 73.3 1.9 4.8E-05 21.0 1.6 171 141-329 117-314 (340)
350 COG0502 BioB Biotin synthase a 73.3 5.8 0.00015 18.1 16.2 208 77-309 90-316 (335)
351 KOG1260 consensus 73.2 5.9 0.00015 18.1 5.8 31 184-214 149-183 (492)
352 PRK05835 fructose-bisphosphate 72.8 6 0.00015 18.1 8.0 113 194-323 154-305 (307)
353 cd04725 OMP_decarboxylase_like 70.3 6.9 0.00018 17.7 10.0 65 198-293 133-206 (216)
354 cd02072 Glm_B12_BD B12 binding 69.8 7 0.00018 17.7 9.9 98 172-291 16-120 (128)
355 COG1692 Calcineurin-like phosp 69.5 7.1 0.00018 17.6 5.6 10 54-63 28-37 (266)
356 PRK10610 chemotaxis regulatory 69.2 7.2 0.00018 17.6 8.8 108 172-320 18-128 (129)
357 TIGR02915 PEP_resp_reg putativ 68.7 5.5 0.00014 18.3 3.1 21 301-321 416-436 (451)
358 PRK08091 ribulose-phosphate 3- 67.9 7.7 0.0002 17.4 12.2 124 138-292 84-219 (235)
359 TIGR02177 PorB_KorB 2-oxoacid: 67.4 7.1 0.00018 17.6 3.5 10 24-33 18-27 (302)
360 TIGR00259 TIGR00259 conserved 66.8 8.1 0.00021 17.3 5.3 66 245-312 191-260 (261)
361 PRK10128 putative aldolase; Pr 66.5 8.2 0.00021 17.3 8.2 23 267-289 200-222 (250)
362 PRK04452 acetyl-CoA decarbonyl 66.5 8.2 0.00021 17.3 7.6 70 134-206 78-148 (322)
363 PRK07315 fructose-bisphosphate 64.7 8.9 0.00023 17.1 10.9 114 192-323 151-291 (293)
364 PRK10558 alpha-dehydro-beta-de 64.2 9.1 0.00023 17.0 9.2 23 268-290 218-240 (256)
365 cd00405 PRAI Phosphoribosylant 63.2 9.5 0.00024 16.9 11.8 121 128-289 56-183 (203)
366 PRK10430 DNA-binding transcrip 62.4 9.8 0.00025 16.8 9.0 41 172-213 65-105 (239)
367 PRK10840 transcriptional regul 62.0 10 0.00026 16.8 12.6 164 133-328 37-202 (216)
368 COG0149 TpiA Triosephosphate i 61.6 7.5 0.00019 17.5 2.7 37 257-293 201-237 (251)
369 PRK01222 N-(5'-phosphoribosyl) 61.0 10 0.00027 16.7 12.4 123 128-290 60-187 (212)
370 COG1411 Uncharacterized protei 60.8 8.6 0.00022 17.1 2.9 36 258-293 181-216 (229)
371 PRK11572 copper homeostasis pr 58.9 11 0.00029 16.4 12.6 115 140-287 81-198 (248)
372 PRK12595 bifunctional 3-deoxy- 58.8 11 0.00029 16.4 16.9 244 28-321 92-359 (360)
373 PRK09426 methylmalonyl-CoA mut 57.2 12 0.00031 16.3 10.2 75 197-293 623-699 (715)
374 PRK09468 ompR osmolarity respo 56.7 12 0.00032 16.2 7.1 165 133-332 37-231 (239)
375 TIGR01163 rpe ribulose-phospha 56.6 12 0.00032 16.2 10.4 127 132-292 68-202 (216)
376 PRK10643 DNA-binding transcrip 56.5 12 0.00032 16.2 7.1 69 133-214 32-101 (222)
377 PRK13398 3-deoxy-7-phosphohept 55.6 13 0.00033 16.1 14.5 99 172-288 124-232 (266)
378 COG0434 SgcQ Predicted TIM-bar 55.3 13 0.00033 16.1 7.0 88 197-309 166-258 (263)
379 PRK10336 DNA-binding transcrip 54.7 13 0.00034 16.0 5.8 68 134-214 33-101 (219)
380 cd02071 MM_CoA_mut_B12_BD meth 54.0 14 0.00035 15.9 8.9 95 173-290 17-113 (122)
381 pfam03932 CutC CutC family. Co 53.6 14 0.00036 15.9 10.3 114 140-285 80-197 (202)
382 COG2185 Sbm Methylmalonyl-CoA 51.6 15 0.00038 15.7 9.6 97 172-291 29-127 (143)
383 PRK10955 DNA-binding transcrip 50.0 16 0.00041 15.6 4.9 41 172-214 60-100 (232)
384 TIGR02154 PhoB phosphate regul 48.9 17 0.00042 15.5 4.8 11 205-215 44-54 (226)
385 TIGR01232 lacD tagatose 1,6-di 48.9 12 0.00031 16.2 2.0 68 256-329 239-312 (325)
386 pfam02662 FlpD Methyl-viologen 48.5 14 0.00036 15.9 2.3 27 194-220 39-66 (124)
387 PRK08645 bifunctional homocyst 47.8 17 0.00044 15.4 5.4 166 7-189 50-231 (608)
388 TIGR01501 MthylAspMutase methy 47.6 16 0.0004 15.6 2.4 42 174-216 20-61 (134)
389 TIGR03239 GarL 2-dehydro-3-deo 44.6 19 0.0005 15.1 9.0 23 267-289 210-232 (249)
390 COG5016 Pyruvate/oxaloacetate 44.2 20 0.0005 15.0 7.9 57 171-227 187-247 (472)
391 TIGR00284 TIGR00284 dihydropte 43.7 20 0.00051 15.0 8.2 174 17-216 54-250 (529)
392 PRK09196 fructose-1,6-bisphosp 43.1 21 0.00052 14.9 7.3 116 194-323 172-327 (347)
393 TIGR02701 shell_carb_anhy carb 40.3 9.8 0.00025 16.8 0.5 10 204-213 256-265 (463)
394 PRK12331 oxaloacetate decarbox 40.1 23 0.00058 14.6 8.9 47 169-215 183-230 (463)
395 PRK11083 DNA-binding response 40.0 23 0.00059 14.6 9.8 68 134-214 36-104 (229)
396 PRK07084 fructose-bisphosphate 39.4 23 0.0006 14.6 11.7 84 194-293 163-274 (321)
397 PRK13803 bifunctional phosphor 39.3 24 0.0006 14.6 2.8 17 269-285 358-374 (611)
398 pfam04476 DUF556 Protein of un 39.3 24 0.0006 14.6 7.5 129 141-290 76-211 (235)
399 TIGR01368 CPSaseIIsmall carbam 39.2 24 0.0006 14.6 7.6 82 173-286 209-292 (383)
400 PTZ00066 pyruvate kinase; Prov 38.1 25 0.00063 14.5 11.4 38 248-287 300-349 (513)
401 COG2069 CdhD CO dehydrogenase/ 37.8 25 0.00063 14.4 7.0 70 133-205 152-222 (403)
402 PRK02227 hypothetical protein; 36.9 26 0.00066 14.3 8.1 79 196-290 133-211 (239)
403 cd02067 B12-binding B12 bindin 36.5 26 0.00066 14.3 8.2 91 172-286 16-108 (119)
404 KOG0623 consensus 36.4 26 0.00067 14.3 6.2 81 198-295 273-364 (541)
405 COG1954 GlpP Glycerol-3-phosph 35.9 27 0.00068 14.2 7.9 32 256-287 142-173 (181)
406 PRK13399 fructose-1,6-bisphosp 35.2 27 0.0007 14.2 12.5 116 194-323 172-327 (347)
407 pfam01136 Peptidase_U32 Peptid 35.0 28 0.0007 14.2 6.3 22 197-218 159-180 (232)
408 TIGR01828 pyru_phos_dikin pyru 35.0 23 0.0006 14.6 1.7 32 256-289 569-600 (920)
409 cd06502 TA_like Low-specificit 34.9 28 0.00071 14.2 5.1 12 205-216 184-195 (338)
410 TIGR00674 dapA dihydrodipicoli 34.6 28 0.00072 14.1 7.8 113 138-288 86-205 (288)
411 TIGR00734 hisAF_rel hisA/hisF 33.7 29 0.00074 14.0 4.4 34 259-293 194-228 (230)
412 pfam00072 Response_reg Respons 33.4 29 0.00075 14.0 10.5 86 172-286 11-98 (111)
413 PRK13397 3-deoxy-7-phosphohept 33.2 30 0.00075 14.0 12.2 98 173-288 113-220 (250)
414 TIGR01235 pyruv_carbox pyruvat 33.0 30 0.00076 14.0 3.9 34 254-287 749-785 (1169)
415 PRK10710 DNA-binding transcrip 33.0 30 0.00076 14.0 5.6 70 132-214 41-110 (240)
416 COG0745 OmpR Response regulato 33.0 30 0.00076 14.0 6.3 174 135-331 34-222 (229)
417 TIGR00706 SppA_dom signal pept 32.1 31 0.00079 13.9 5.4 74 134-215 32-105 (224)
418 COG5564 Predicted TIM-barrel e 32.1 31 0.00079 13.9 6.4 107 171-290 142-255 (276)
419 cd00311 TIM Triosephosphate is 31.8 31 0.0008 13.8 2.5 36 256-292 197-233 (242)
420 PRK09935 transcriptional regul 31.5 32 0.00081 13.8 8.7 158 134-328 38-201 (210)
421 PRK11361 acetoacetate metaboli 31.5 32 0.00081 13.8 10.3 23 259-281 372-394 (457)
422 PRK12581 oxaloacetate decarbox 31.0 32 0.00082 13.8 8.8 58 169-226 192-253 (468)
423 TIGR02875 spore_0_A sporulatio 31.0 32 0.00082 13.8 5.1 69 136-214 39-107 (270)
424 cd07228 Pat_NTE_like_bacteria 30.4 33 0.00084 13.7 2.9 26 260-285 146-171 (175)
425 COG0325 Predicted enzyme with 30.1 22 0.00056 14.8 0.9 23 270-292 202-224 (228)
426 PRK09282 pyruvate carboxylase 30.1 33 0.00085 13.7 8.6 58 169-226 184-245 (580)
427 PRK10816 DNA-binding transcrip 30.0 34 0.00085 13.7 5.8 68 133-213 32-100 (223)
428 TIGR00502 nagB glucosamine-6-p 29.7 16 0.00041 15.5 0.2 13 56-68 32-44 (260)
429 TIGR00080 pimt protein-L-isoas 29.5 34 0.00087 13.6 2.8 40 24-65 33-73 (228)
430 PRK08508 biotin synthase; Prov 28.9 35 0.00089 13.6 14.9 186 78-288 47-251 (279)
431 cd00156 REC Signal receiver do 28.2 36 0.00092 13.5 10.7 71 196-290 29-100 (113)
432 PRK03562 glutathione-regulated 27.8 37 0.00093 13.4 9.4 36 248-285 480-515 (615)
433 pfam01212 Beta_elim_lyase Beta 27.8 32 0.00082 13.8 1.4 41 172-216 151-198 (288)
434 TIGR00126 deoC deoxyribose-pho 27.7 37 0.00094 13.4 4.2 99 171-290 109-221 (225)
435 PRK09836 DNA-binding transcrip 27.7 37 0.00094 13.4 9.6 68 134-214 33-101 (226)
436 COG0505 CarA Carbamoylphosphat 27.5 37 0.00095 13.4 8.1 67 191-286 207-274 (368)
437 TIGR01064 pyruv_kin pyruvate k 27.3 37 0.00096 13.4 5.0 76 237-317 270-365 (513)
438 TIGR01859 fruc_bis_ald_ fructo 27.2 38 0.00096 13.4 9.5 26 133-158 165-190 (339)
439 TIGR01169 rplA_bact ribosomal 27.0 34 0.00085 13.7 1.4 10 201-210 83-92 (227)
440 PRK06739 pyruvate kinase; Vali 26.6 39 0.00098 13.3 6.2 119 133-287 167-305 (352)
441 TIGR00044 TIGR00044 conserved 26.1 26 0.00066 14.3 0.7 23 270-292 226-248 (250)
442 cd06556 ICL_KPHMT Members of t 26.1 39 0.001 13.3 6.9 18 198-215 160-177 (240)
443 TIGR00478 tly hemolysin A; Int 26.0 40 0.001 13.2 2.8 24 261-284 80-103 (240)
444 PRK07531 bifunctional 3-hydrox 26.0 40 0.001 13.2 5.1 70 263-332 201-294 (489)
445 TIGR01496 DHPS dihydropteroate 25.9 40 0.001 13.2 6.1 188 136-333 28-261 (268)
446 PRK12838 carbamoyl phosphate s 25.9 40 0.001 13.2 7.5 82 173-286 180-261 (356)
447 PRK06129 3-hydroxyacyl-CoA deh 25.8 40 0.001 13.2 5.9 58 262-320 204-263 (308)
448 COG1908 FrhD Coenzyme F420-red 25.0 41 0.0011 13.1 2.5 23 193-215 39-61 (132)
449 PRK09958 DNA-binding transcrip 24.5 42 0.0011 13.1 11.5 160 134-328 34-195 (204)
450 TIGR02858 spore_III_AA stage I 23.8 44 0.0011 13.0 3.4 43 174-217 198-240 (282)
451 PRK12361 hypothetical protein; 23.7 44 0.0011 13.0 4.8 50 172-221 258-310 (546)
452 PRK08673 3-deoxy-7-phosphohept 23.3 45 0.0011 12.9 17.1 130 174-321 192-334 (335)
453 TIGR02644 Y_phosphoryl pyrimid 23.3 41 0.001 13.2 1.3 10 274-283 185-194 (425)
454 PRK10651 transcriptional regul 23.3 45 0.0011 12.9 7.1 163 134-328 41-207 (216)
455 cd00453 FTBP_aldolase_II Fruct 23.1 45 0.0011 12.9 6.8 80 194-290 180-275 (340)
456 PRK10046 dpiA two-component re 23.0 45 0.0012 12.9 9.9 69 133-214 38-107 (225)
457 PRK12342 putative electron tra 23.0 45 0.0012 12.9 4.4 17 296-312 237-253 (254)
458 PRK10161 transcriptional regul 22.9 45 0.0012 12.9 6.8 69 133-214 34-105 (229)
459 pfam02896 PEP-utilizers_C PEP- 22.7 46 0.0012 12.9 5.7 34 256-289 244-278 (292)
460 PRK09331 Sep-tRNA:Cys-tRNA syn 22.4 47 0.0012 12.8 5.0 44 172-217 176-219 (386)
461 PRK05826 pyruvate kinase; Prov 22.4 47 0.0012 12.8 8.1 38 248-287 264-313 (461)
462 PRK11517 transcriptional regul 22.3 47 0.0012 12.8 7.5 68 134-214 33-100 (223)
463 COG2204 AtoC Response regulato 22.0 47 0.0012 12.8 7.2 25 132-156 175-201 (464)
464 COG2089 SpsE Sialic acid synth 21.9 48 0.0012 12.8 3.6 72 248-322 197-273 (347)
465 cd07208 Pat_hypo_Ecoli_yjju_li 21.9 48 0.0012 12.8 1.9 28 260-287 152-179 (266)
466 PRK06354 pyruvate kinase; Prov 21.8 48 0.0012 12.8 6.3 39 247-287 267-317 (589)
467 COG1080 PtsA Phosphoenolpyruva 21.8 48 0.0012 12.7 6.0 33 255-287 494-527 (574)
468 PRK10923 glnG nitrogen regulat 21.7 48 0.0012 12.7 7.2 32 28-61 49-80 (469)
469 PRK10529 DNA-binding transcrip 21.2 49 0.0013 12.7 3.0 67 135-214 35-101 (225)
470 CHL00148 orf27 Ycf27; Reviewed 20.7 50 0.0013 12.6 4.5 69 133-214 38-106 (240)
471 PRK12290 thiE thiamine-phospha 20.6 51 0.0013 12.6 5.5 63 258-323 366-428 (439)
472 PRK12564 carbamoyl phosphate s 20.6 51 0.0013 12.6 7.5 82 173-286 184-266 (355)
473 PRK10669 putative cation:proto 20.6 51 0.0013 12.6 8.6 39 248-288 498-536 (558)
474 cd00423 Pterin_binding Pterin 20.5 51 0.0013 12.6 7.4 42 170-215 63-105 (258)
475 PRK10766 DNA-binding transcrip 20.2 52 0.0013 12.6 6.7 68 133-213 34-101 (224)
No 1
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=512.56 Aligned_cols=333 Identities=44% Similarity=0.707 Sum_probs=319.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHH
Q ss_conf 5789999985302558974---7568863032455789981017462998989625686850126633430002569999
Q gi|254781020|r 4 DRKIDHINIVCKDPGIDRN---KKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLA 80 (337)
Q Consensus 4 ~~~~~~i~~a~~e~~~~~n---~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA 80 (337)
+||+|||++|..+.....+ +++||++.|+|++||.+|++||||+|+|+|++++.||+|++||||+......+|..||
T Consensus 1 ~RK~eHi~~cl~~~~~~~~~~~~~~f~d~~liH~aLPe~~~~~idl~t~flG~~~~~P~~I~aMTGG~~~~a~~IN~~LA 80 (349)
T TIGR02151 1 ERKDEHIELCLKENVESGNRSVSTGFDDIKLIHNALPEINLDEIDLTTEFLGKRLKAPFLINAMTGGSEEKAGKINRKLA 80 (349)
T ss_pred CCHHHHHHHHHCCCHHCCCCCCCCCCCEEEECCCCCCCCCHHHCCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97489999860200110474544454111343456876775362642444682211676761455773678889989999
Q ss_pred HHHHHHCCEEECCCCHHHHCCHHHHHHH-HHHHHCCCHHHHHCCCCCCCCCC---CCHHHHHHHHHHHCCCEEEECCCCH
Q ss_conf 9999809906605202211286688899-99986640123220275212367---9989999877650898576253203
Q gi|254781020|r 81 IAAEKTKVAMAVGSQRVMFSDHNAIKSF-ELRQYAPHTVLISNLGAVQLNYD---FGVQKAHQAVHVLGADGLFLHLNPL 156 (337)
Q Consensus 81 ~aa~~~g~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (337)
++|++.|+++.+||+++.+.+|+..++| .+++.+|+.++++|+++.++... ++.+.+.+++++..+|+|.+|+|..
T Consensus 81 ~aA~e~gi~mgvGSqraal~~P~~~~tF~~vR~~aP~~~l~AN~GA~q~~~~~~~~g~~~~~~aid~i~AdAL~iHlN~~ 160 (349)
T TIGR02151 81 RAAEELGIPMGVGSQRAALKDPEVAETFEVVREEAPNGPLIANIGAPQLVEGGKKYGVEEAQEAIDMIEADALAIHLNVL 160 (349)
T ss_pred HHHHHHCCCEEECHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998198154300222112712466699999767983378717878874065344889999999875101335543233
Q ss_pred HHHHHHCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCC---
Q ss_conf 566520688524-3079999999987399717850478668899999997699799945888865100123102344---
Q gi|254781020|r 157 QEIIQPNGNTNF-ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLES--- 232 (337)
Q Consensus 157 ~~~~~~~~~~~~-~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~--- 232 (337)
|+.+++.||+.| .++.+.|+++++..+.|||+|.||++.+.+.++.+.++|+++|.|+|.|||+|+.+|..|+...
T Consensus 161 QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~~~Gv~aiDv~G~GGTswa~vE~~Rr~~~~~~ 240 (349)
T TIGR02151 161 QELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGISKEVAKLLADAGVKAIDVSGAGGTSWAAVENYRRAKESNQ 240 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf 02557999701565389999999965289879982157998899999987890088707876755999998875157523
Q ss_pred -C--CCHHHHHCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC-CCHHHHHHHHHH
Q ss_conf -3--2324431063468899999852-2898799729888889999999838885233479999841-466899999999
Q gi|254781020|r 233 -D--IGIVFQDWGIPTPLSLEMARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM-DSSDAVVAAIES 307 (337)
Q Consensus 233 -~--~~~~~~~~gi~~~~al~~~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~ 307 (337)
. .+..+++||||++.+|.+++.. ..+.||||+||+|+|-|++|||||||++|++.+|||+++. .|+|+|.+.|+.
T Consensus 241 ~~~r~a~~f~~WGipT~~sL~~~~~~~~~~~~~iASGG~r~GlD~AKAlALGA~~~G~A~~~L~~~~~~g~e~~~~~~~~ 320 (349)
T TIGR02151 241 KYERLASAFSDWGIPTAASLLEVRSIDAPDAPLIASGGLRTGLDVAKALALGADAVGMARPLLKAALDEGEEAVIEEIEL 320 (349)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 57888777741488668999998642124773688467778889999999621188888999998852698899999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 99999999998089857896149600056
Q gi|254781020|r 308 LRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 308 l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
|.+|||..|-++||+||+||++++.++..
T Consensus 321 ~~~eLk~~mfl~G~~~i~EL~~~~~v~~~ 349 (349)
T TIGR02151 321 IIEELKVAMFLTGAKNIKELKKVPLVISG 349 (349)
T ss_pred HHHHHHHHHHHHCCCCHHHHCCCCEEEEC
T ss_conf 99999999987179887986178715419
No 2
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=0 Score=492.41 Aligned_cols=334 Identities=45% Similarity=0.722 Sum_probs=315.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHH
Q ss_conf 91157899999853025589747568863032455789981017462998989625686850126633430002569999
Q gi|254781020|r 1 MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLA 80 (337)
Q Consensus 1 ~~~~~~~~~i~~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA 80 (337)
++.+||+|||++|.++....+..+.||+|+|+|+.||.+|++||||||+|+|++++.||+|++|+||+... ..++..||
T Consensus 5 ~~~~RK~eHi~lal~~~~~~~~~~~fd~v~l~h~aLPe~~~~diD~st~~lG~~l~~P~~I~aMTGG~~~~-~~IN~~LA 83 (351)
T PRK05437 5 QIENRKDEHIEIALKQDVEYQKTTGFDDVRLIHNALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKA-KEINRKLA 83 (351)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEECCCCCCCCEEEECCCCCCHHH-HHHHHHHH
T ss_conf 67778999999985443456778987547885478765888777065258872537876886534687546-28999999
Q ss_pred HHHHHHCCEEECCCCHHHHCCHHHHHHHH-HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHH
Q ss_conf 99998099066052022112866888999-99866401232202752123679989999877650898576253203566
Q gi|254781020|r 81 IAAEKTKVAMAVGSQRVMFSDHNAIKSFE-LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEI 159 (337)
Q Consensus 81 ~aa~~~g~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (337)
++|.+.|+++.+||++....+++..++|+ +++.+|+.++++|++..+. ...+.+.++++.+..+++++.+|+|.+|+.
T Consensus 84 ~~A~~~gi~m~vGSqr~al~~~~~~~sf~vvR~~~p~~~l~aNiGa~~~-~~~~~~~~~~av~~i~AdAl~iHlN~~QEl 162 (351)
T PRK05437 84 EAAEELGIAMGVGSQRAALKDPELADSFSVVRKVAPDGLLFANIGAVQL-YGYGVEEAQRAVEMIEADALQIHLNPLQEL 162 (351)
T ss_pred HHHHHCCCCEEECCHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCEEEECCCHHHH
T ss_conf 9999839877733178885391456569999986888738861272101-435899999999971678157524624540
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 52068852430799999999873997178504786688999999976997999458888651001231023443232443
Q gi|254781020|r 160 IQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQ 239 (337)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~ 239 (337)
.++.|+++|+++++.++|+++.++.|+++|.||++.++++++.+.++|+++|+|+|||||+|+.+|..|+.....+..+.
T Consensus 163 ~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKeVG~Gis~e~a~~l~~~Gv~~IdVsg~GGTnf~~IE~~R~~~~~~~~~~~ 242 (351)
T PRK05437 163 VQPEGDRDFRGWLDRIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAVENYRAKQRRLASYFA 242 (351)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCHHHHHHHH
T ss_conf 28888977889999999999867998898521578899999999967999999579988557999988710212457777
Q ss_pred HCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10634688999998522898799729888889999999838885233479999841-46689999999999999999998
Q gi|254781020|r 240 DWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM-DSSDAVVAAIESLRKEFIVSMFL 318 (337)
Q Consensus 240 ~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~l~~el~~~m~~ 318 (337)
+||+|++.+|.+++++.++++||+|||||+|.||+|||||||++|+++||||+++. .|.++|.++++.|+.||+..|.+
T Consensus 243 ~wGipT~~sL~e~~~~~~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~l~~~g~e~~~~~l~~~~~elk~~M~L 322 (351)
T PRK05437 243 DWGIPTAQSLLEARSALPDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKAALEGGVEAVIEEIEGWIEELKTAMFL 322 (351)
T ss_pred HCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34866899999999747998299627878789999999955107775899999998569999999999999999999998
Q ss_pred CCCCCHHHHHCCCCCCCC
Q ss_conf 089857896149600056
Q gi|254781020|r 319 LGTKRVQELYLNTALIRH 336 (337)
Q Consensus 319 ~G~~~i~el~~~~~~i~~ 336 (337)
+|++||+||++.++++.+
T Consensus 323 ~G~~~i~eL~~~~~i~~g 340 (351)
T PRK05437 323 TGAKNIAELRQVPLVLSG 340 (351)
T ss_pred HCCCCHHHHHCCCEEECH
T ss_conf 689989998179999877
No 3
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=0 Score=481.83 Aligned_cols=323 Identities=47% Similarity=0.753 Sum_probs=303.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 78999998530255897475688630324557899810174629989896256868501266334300025699999999
Q gi|254781020|r 5 RKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAE 84 (337)
Q Consensus 5 ~~~~~i~~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~ 84 (337)
||+|||++|.++....+..+.||+|.|+|++||.+|+++|||||+|+|++++.||+|++|+||+.. ...++..||++|+
T Consensus 1 RK~eHi~la~~~~~~~~~~~~fd~i~l~~~~Lp~~d~~~iDlst~~lG~~l~~P~~I~AMTGG~~~-~~~iN~~LA~aA~ 79 (326)
T cd02811 1 RKDEHLELCLEENVESGGSTGFDDVRLVHNALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEK-AKEINRNLAEAAE 79 (326)
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCEEECCCCCCCCEEEECCCCCCHH-HHHHHHHHHHHHH
T ss_conf 908999998623335578888654788767776688644626535897324787588755579755-6588999999999
Q ss_pred HHCCEEECCCCHHHHCCHHHHHHHHH-HHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHC
Q ss_conf 80990660520221128668889999-98664012322027521236799899998776508985762532035665206
Q gi|254781020|r 85 KTKVAMAVGSQRVMFSDHNAIKSFEL-RQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPN 163 (337)
Q Consensus 85 ~~g~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (337)
+.|+++.+||++....+++...+|++ ++.++..++++|++..++. ..+.+..+++.+...++++.+|+|.+|+..++.
T Consensus 80 ~~gi~m~vGSq~~al~~~~~~~sf~vvR~~~p~~~l~aNiga~~l~-~~~~~~~~~ai~~l~AdaL~iHlN~~QE~~~pe 158 (326)
T cd02811 80 ELGIAMGVGSQRAALEDPELAESFTVVREAPPNGPLIANLGAVQLN-GYGVEEARRAVEMIEADALAIHLNPLQEAVQPE 158 (326)
T ss_pred HCCCCEEECCHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCHHHC-CCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCC
T ss_conf 8199778342288753921665678998758876278635803304-568999999998557885786446065400789
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCC--CHHHHHC
Q ss_conf 88524307999999998739971785047866889999999769979994588886510012310234432--3244310
Q gi|254781020|r 164 GNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDI--GIVFQDW 241 (337)
Q Consensus 164 ~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~--~~~~~~~ 241 (337)
++++|+++|+.++|+++.++.|+++|+||++.++++++.+.++|+++|+|||||||+|+.+|..|+.+..+ ...+.+|
T Consensus 159 GDr~f~~~~~~I~~l~~~~~vPVIvKeVG~Gis~eda~~l~~~Gv~~IdVSghGGTnf~~IE~~R~~d~~~~~~~~l~dw 238 (326)
T cd02811 159 GDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf 89877789999999998479985885247899999999999679999997899997536653101567313378898862
Q ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 63468899999852289879972988888999999983888523347999984146689999999999999999998089
Q gi|254781020|r 242 GIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 242 gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 321 (337)
|+|++++|++++++..++|||+|||||+|.||+|||||||++|++|||||+++..|+++|.++++.|++||+..|.++|+
T Consensus 239 Gi~T~~sL~e~~~~~~~~~iiasGGir~g~Dv~KalaLGA~~vgiar~~L~~~~~G~~~v~~~l~~~~~el~~~M~l~G~ 318 (326)
T cd02811 239 GIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALEGEEAVIETIEQIIEELRTAMFLTGA 318 (326)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 85569999999973899819986887877999999995553365279999998548999999999999999999998689
Q ss_pred CCHHHHHC
Q ss_conf 85789614
Q gi|254781020|r 322 KRVQELYL 329 (337)
Q Consensus 322 ~~i~el~~ 329 (337)
+||+|||+
T Consensus 319 ~~i~eLr~ 326 (326)
T cd02811 319 KNLAELKQ 326 (326)
T ss_pred CCHHHHCC
T ss_conf 98899748
No 4
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=0 Score=416.09 Aligned_cols=290 Identities=23% Similarity=0.276 Sum_probs=239.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
|||+ .|+||.|+++|+.+|++|+|+||+| +|++++||||+|||+++++||++||| |++...++.+|.++|++|++.
T Consensus 17 dYi~gGA~de~Tl~~N~~Af~~~~l~Pr~L--~dvs~~dtst~l~G~~~~~P~~iAP~-g~~~l~hp~gE~a~AraA~~~ 93 (344)
T cd02922 17 AYYSSGADDEITLRENLEAFQRIRFRPRVL--RDVEKVDTSTTILGHKVSLPFFISPA-ALAKLAHPDGELNLARAAGKH 93 (344)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCEECCCCEEECHH-HHHHHCCCCHHHHHHHHHHHC
T ss_conf 987046662499999999998476765332--48888988556898336775156647-776432884569999999974
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCC-CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCC-
Q ss_conf 99066052022112866888999998664-0123220275212367998999987765089857625320356652068-
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAP-HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNG- 164 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 164 (337)
|+++++|+.+..+.++.... .+ ....+.|++.. ...+. .+...++.+..+++++.++++.|........
T Consensus 94 gi~~~lSt~ss~slEdVa~a-------~~~~~~~wfQLY~~-~dr~~-~~~li~RA~~aG~~alvlTvD~p~~G~R~rd~ 164 (344)
T cd02922 94 GILQMISTNASCSLEEIVDA-------RPPDQPLFFQLYVN-KDRTK-TEELLKRAEKLGAKAIFLTVDAPVLGKRERDE 164 (344)
T ss_pred CCCEEEECCCCCCHHHHHHH-------CCCCCCEEEEEECC-CCHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHH
T ss_conf 88657405777888999986-------56898669998247-76799-99999999986998899956788877522666
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf ------------------------------85243079999999987399717850478668899999997699799945
Q gi|254781020|r 165 ------------------------------NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 165 ------------------------------~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
.....-.|++++|+|+.|+.|+++|++ .++++++.|.++|+|+|+||
T Consensus 165 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tw~di~~lr~~~~~plivKGI---l~~~DA~~A~~~G~dgIiVS 241 (344)
T cd02922 165 RLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLPIVLKGV---QTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCEEEEE
T ss_conf 507777887665433334466316677775048889999999999866997010025---77999999996599889971
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH----HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 888865100123102344323244310634688999998----5228987997298888899999998388852334799
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR----PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~----~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
|||| ||+++.+ +++++|++++ +++.++||+.|||||+|.||+||||||||+|++|||+
T Consensus 242 NHGG---------RqLD~~~---------~~i~~Lp~I~~~~~av~~~~~v~~DgGiR~G~DV~KAlALGA~aV~iGRp~ 303 (344)
T cd02922 242 NHGG---------RQLDTAP---------APIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPF 303 (344)
T ss_pred CCCC---------CCCCCCC---------CHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 8862---------1257883---------189998999998898588708997188575789999997699989767899
Q ss_pred HHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 9984-146689999999999999999998089857896149
Q gi|254781020|r 291 LKPA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 291 l~~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
+|++ .+|++||+++++.|++||+.+|.++||+||+||..+
T Consensus 304 l~gla~~G~~Gv~~~l~il~~El~~~M~l~G~~si~~l~pS 344 (344)
T cd02922 304 LYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLGPS 344 (344)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 99988443999999999999999999998589988874998
No 5
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=0 Score=414.10 Aligned_cols=290 Identities=22% Similarity=0.287 Sum_probs=240.1
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
|||+ .|+||.|+++|+.+|++|.|+||+| +|++++||+|+|||+++++||++||| |++.+.++.+|.++|++|.+.
T Consensus 38 dY~~gGa~de~tl~~N~~af~~~~l~PRvL--~dv~~~d~~t~llG~~~~~P~~iaP~-g~~~l~hp~gE~~~AraA~~~ 114 (383)
T cd03332 38 AYVAGGAGSESTARANRDAFSRWRIVPRML--RGVTERDLSVELFGRTLAAPLLLAPI-GVQELFHPDAELATARAAAEL 114 (383)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCEECCCCEEECHH-HHHHCCCCCHHHHHHHHHHHH
T ss_conf 886246661699999999998557767113--58888888645798156777388778-774414897789999999983
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHC---
Q ss_conf 99066052022112866888999998664012322027521236799899998776508985762532035665206---
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPN--- 163 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 163 (337)
|+++++|+.+..+.++... ..+....+.|+... .+.+.. +...+..+..+++++.++++.|.......
T Consensus 115 g~~~~lSt~ss~slEeva~-------~~~~~~~wfQLY~~-~Dr~~~-~~ll~RA~~aG~~aLvlTVD~Pv~G~Rerd~r 185 (383)
T cd03332 115 GVPYILSTASSSSIEDVAA-------AAGDAPRWFQLYWP-KDDDLT-ESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLD 185 (383)
T ss_pred CCCEECCCCCCCCHHHHHH-------HCCCCCEEEEEECC-CCHHHH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 5862205776788999998-------66899639999515-888999-99999999738977999226866687654553
Q ss_pred -----------------------------C-------------------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf -----------------------------8-------------------8524307999999998739971785047866
Q gi|254781020|r 164 -----------------------------G-------------------NTNFADLSSKIALLSSAMDVPLLLKEVGCGL 195 (337)
Q Consensus 164 -----------------------------~-------------------~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~ 195 (337)
. .....-.|++++|+|+.|+.|+++|++ .
T Consensus 186 ~g~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plilKGI---~ 262 (383)
T cd03332 186 LGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLKGI---L 262 (383)
T ss_pred CCCCCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEECCC---C
T ss_conf 2688643303677754788999973256776545677501459999985378889989999999876998532356---8
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHH
Q ss_conf 8899999997699799945888865100123102344323244310634688999998-522898799729888889999
Q gi|254781020|r 196 SSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 196 ~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~ 274 (337)
++++++.|+++|+|+|+|||||| ||+++.+ +++++|++++ +++++++|+.|||||+|.||+
T Consensus 263 ~~eDA~~A~~~G~dgIiVSNHGG---------RQLD~ap---------a~i~~LpeI~~aV~~~~~V~~DgGIRrG~DV~ 324 (383)
T cd03332 263 HPDDARRAVEAGVDGVVVSNHGG---------RQVDGSI---------AALDALPEIVEAVGDRLTVLFDSGVRTGADIM 324 (383)
T ss_pred CHHHHHHHHHCCCCEEEEECCCC---------CCCCCCC---------CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHH
T ss_conf 99999999975998899807863---------4467883---------27899999999847998499979978679999
Q ss_pred HHHHHCCCEEHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 9998388852334799998-4146689999999999999999998089857896149
Q gi|254781020|r 275 KSIILGASLGGLASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 275 kAlalGAdaV~iGr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
|||||||++|++|||++|+ +.+|++||++++++|++||+.+|.++||+||+||...
T Consensus 325 KAlALGA~~V~iGRp~l~glaa~G~~GV~~~l~iL~~El~~~M~l~G~~si~el~~~ 381 (383)
T cd03332 325 KALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTRD 381 (383)
T ss_pred HHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC
T ss_conf 999769998987789999877231999999999999999999998589997785920
No 6
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=412.59 Aligned_cols=294 Identities=20% Similarity=0.282 Sum_probs=239.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
||++ .|+||.|+++|+.+|++|.|+||+| +|++++||+|+|||+++++||++||| |.+...++.+|.++|++|.+.
T Consensus 23 ~Y~~gGa~de~tl~~N~~af~~~~l~PRvL--~dvs~~dtst~llG~~~~~P~~iaP~-g~~~l~hp~gE~a~ArAA~~~ 99 (381)
T PRK11197 23 HYIDGGAYAEYTLRRNVEDLADIALRQRVL--KNMSDLSLETELFGETLAMPVALAPV-GLTGMYARRGEVQAARAADAK 99 (381)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCCCCCCCEEECHH-HHHCCCCCCHHHHHHHHHHHH
T ss_conf 997046663299999999998461755014--68777888634788306777346757-774167897579999999970
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHH-----
Q ss_conf 990660520221128668889999986640123220275212367998999987765089857625320356652-----
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQ----- 161 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 161 (337)
|+++++|+.+..+.++.... .....+.|++.. .+.+.. ....++.+..++.++.++++.|.....
T Consensus 100 gi~~~lSt~ss~slEeva~a--------~~~~~WfQLY~~-~Dr~~~-~~ll~RA~~aG~~alvlTVD~pv~g~R~rd~r 169 (381)
T PRK11197 100 GIPFTLSTVSVCPIEEVAPA--------IKRPMWFQLYVL-RDRGFM-RNALERAKAAGCSTLVFTVDMPVPGARYRDAH 169 (381)
T ss_pred CCCEEECCCCCCCHHHHHHH--------CCCCEEEEEEEC-CCHHHH-HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHC
T ss_conf 77178327765679999863--------589738998413-888999-99999999849987998078887786655430
Q ss_pred ---------------------------HCCCC---------------------------CHHHHHHHHHHHHHHCCCCEE
Q ss_conf ---------------------------06885---------------------------243079999999987399717
Q gi|254781020|r 162 ---------------------------PNGNT---------------------------NFADLSSKIALLSSAMDVPLL 187 (337)
Q Consensus 162 ---------------------------~~~~~---------------------------~~~~~~~~i~~l~~~~~~pii 187 (337)
..+.+ ...-.|++++|+|+.|+.|++
T Consensus 170 n~~~~p~~~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ltW~di~wlr~~w~~plv 249 (381)
T PRK11197 170 SGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIREFWDGPMV 249 (381)
T ss_pred CCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 67778981287899886481787763344788654431001377655888999987505888999999999987299767
Q ss_pred EEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCC
Q ss_conf 850478668899999997699799945888865100123102344323244310634688999998-5228987997298
Q gi|254781020|r 188 LKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGG 266 (337)
Q Consensus 188 ~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGG 266 (337)
+|++ .++++++.|.++|+|+|+|||||| ||+++.+ +++++|++++ +++++++|+.|||
T Consensus 250 lKGI---l~~eDA~~A~~~G~dgIiVSNHGG---------RQLD~ap---------a~i~~LpeI~~aV~~~~~V~~DgG 308 (381)
T PRK11197 250 IKGI---LDPEDARDAVRFGADGIVVSNHGG---------RQLDGVL---------SSARALPAIADAVKGDIAILADSG 308 (381)
T ss_pred EECC---CCHHHHHHHHHCCCCEEEEECCCC---------CCCCCCC---------CHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8525---889999999966998899957763---------2156784---------489999999998678973999689
Q ss_pred CCCHHHHHHHHHHCCCEEHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 8888999999983888523347999984-146689999999999999999998089857896149600056
Q gi|254781020|r 267 LRNGVDILKSIILGASLGGLASPFLKPA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 267 Ir~g~Dv~kAlalGAdaV~iGr~~l~~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
||+|.||+|||||||++|++|||++|++ .+|++||++++++|++||+.+|.++||++|+||.. ..+||+
T Consensus 309 iRrG~DV~KALALGA~aV~vGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~~i~~l~~-~~lv~~ 378 (381)
T PRK11197 309 IRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITR-DSLVQG 378 (381)
T ss_pred CCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCH-HHEECC
T ss_conf 7866899999976998897675999987713388999999999999999999858999678799-772358
No 7
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=0 Score=410.14 Aligned_cols=291 Identities=18% Similarity=0.239 Sum_probs=241.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
||++ .|++|.|+++|+.+|++|.|+||+| +|++++||+|+|||+++++||++||+ |++...++.+|.++|++|++.
T Consensus 25 ~Y~~gga~~e~t~~~N~~af~~~~l~PrvL--~dv~~~d~~t~llG~~~~~P~~iaP~-g~~~l~hp~gE~~~AraA~~~ 101 (351)
T cd04737 25 GYIAGGSEDEWTLRENTRAFNHKQIVPRVL--QGVESPDTSTELLGIKLKTPIIMAPI-AAHGLAHATGEVATARGMAEV 101 (351)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCCCCCCCEEECHH-HHHHHCCCCHHHHHHHHHHHC
T ss_conf 987146562299999999998471755334--58777988435788025776265538-874044684789999999975
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH----
Q ss_conf 9906605202211286688899999866401232202752123679989999877650898576253203566520----
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQP---- 162 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 162 (337)
|+++++|+.+..+.++... ..+....++|++... ..+.. +...+..+..++.++.++++.+......
T Consensus 102 gi~~~lSt~s~~s~Eeia~-------a~~~~~~wfQLY~~~-dr~~~-~~li~RA~~aG~~alvlTVD~p~~g~Rerd~r 172 (351)
T cd04737 102 GSLFSISTYSNTSLEEIAK-------ASNGGPKWFQLYMSK-DDGFN-RSLLDRAKAAGAKAIILTADATVGGNREADIR 172 (351)
T ss_pred CCCEEECCCCCCCHHHHHH-------HCCCCCEEEEEECCC-CHHHH-HHHHHHHHHCCCCEEEEEECCCCCCCCHHHHH
T ss_conf 9863405677778999997-------467997089971358-87999-99999999869998999631788786277886
Q ss_pred ------CC----------CC------------CHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf ------68----------85------------243079999999987399717850478668899999997699799945
Q gi|254781020|r 163 ------NG----------NT------------NFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 163 ------~~----------~~------------~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
.+ .. ...-.|++++|+++.|+.|+++|++ .++++++.|+++|+|+|+||
T Consensus 173 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~di~~lr~~~~lplilKGI---~~~eDA~~A~~~G~dgIvVS 249 (351)
T cd04737 173 NKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGI---QSPEDADVAINAGADGIWVS 249 (351)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCCEEECCC---CCHHHHHHHHHCCCCEEEEC
T ss_conf 299889998722344677755555688988632579989999999864998532366---77999999987499889977
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 888865100123102344323244310634688999998-5228987997298888899999998388852334799998
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
|||| ||+++.+ +++++|++++ +++++++|+.|||||+|.||+|||||||++|++|||++|+
T Consensus 250 NHGG---------RQLD~~p---------~~i~~LpeI~~av~~~~~V~~DgGIR~G~DV~KALALGA~aV~iGRp~l~g 311 (351)
T cd04737 250 NHGG---------RQLDGGP---------ASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYG 311 (351)
T ss_pred CCCC---------CCCCCCH---------HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHH
T ss_conf 8751---------2356760---------478899999998668964997698674689999997699889757899998
Q ss_pred H-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 4-1466899999999999999999980898578961496
Q gi|254781020|r 294 A-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNT 331 (337)
Q Consensus 294 ~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~ 331 (337)
+ .+|++||+++++.|++||..+|.++||+||+||.+..
T Consensus 312 laa~G~~GV~~~l~iL~~El~~~M~l~G~~si~dl~~s~ 350 (351)
T cd04737 312 LALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRTF 350 (351)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCC
T ss_conf 871338999999999999999999986899988849020
No 8
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=100.00 E-value=0 Score=404.46 Aligned_cols=287 Identities=25% Similarity=0.299 Sum_probs=242.3
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 899999-8530255897475688630324557899810174629989896256868501266334300025699999999
Q gi|254781020|r 6 KIDHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAE 84 (337)
Q Consensus 6 ~~~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~ 84 (337)
.-||++ .|++|.|+++|+.+||+|.|+||+| .|++++||||+|||+++++||++||| ++....++.+|..+|++|.
T Consensus 8 ~~~Y~~gga~~e~t~~~N~~af~~~~l~pr~L--~dv~~~d~st~~lG~~~~~Pi~iap~-g~~~l~~~~ge~~lAraA~ 84 (301)
T pfam01070 8 AFDYIDGGAGDEITLRRNRAAFDRIRLRPRVL--RDVSDRDTSTTLLGQRLSLPFGIAPT-GMQGLAHPDGELALARAAA 84 (301)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCCCCCCCEEECCC-CHHHHCCCCHHHHHHHHHH
T ss_conf 99998146775299999999998370676445--78877888435788316787678740-1022137645899999999
Q ss_pred HHCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCC
Q ss_conf 80990660520221128668889999986640123220275212367998999987765089857625320356652068
Q gi|254781020|r 85 KTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNG 164 (337)
Q Consensus 85 ~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (337)
+.|+++++|+++..+.++... ..+ ...+.|+... ...+...+.+ +..+..+++++.+|++.++.......
T Consensus 85 ~~gi~~~lss~~~~~~e~i~~-------~~~-~~~~fQly~~-~d~~~~~~~i-~ra~~ag~~al~ltvD~~~~g~r~~d 154 (301)
T pfam01070 85 AAGIPFVLSTVASTSLEEVAA-------AAG-GPLWFQLYVP-KDRELTEDLL-ERAEAAGYKALVLTVDTPVLGNRERD 154 (301)
T ss_pred HHCCCEECCCCCCCCHHHHHH-------HCC-CCEEEEEEEC-CCHHHHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 835870046876555278898-------579-9768998745-8889999999-99997499979997268765778532
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
Q ss_conf 85243079999999987399717850478668899999997699799945888865100123102344323244310634
Q gi|254781020|r 165 NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP 244 (337)
Q Consensus 165 ~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~ 244 (337)
.+. .++++|+++.|+.|+++|++ .++++++.+.++|+|+|+|||||| ||++ ++++
T Consensus 155 ~r~----~~~i~~l~~~~~~PvivKGI---~s~eDA~~a~~~Gv~~I~VSnHGG---------RqlD---------~~~~ 209 (301)
T pfam01070 155 LRN----GDDLAWLRDQWKGPLVLKGI---LSPEDAKRAVEAGVDGIVVSNHGG---------RQLD---------GAPA 209 (301)
T ss_pred CCC----HHHHHHHHHHCCCCEEEECC---CCHHHHHHHHHCCCCEEEECCCCC---------CCCC---------CCCC
T ss_conf 043----99999999866998899828---999999999985999999649985---------4468---------8867
Q ss_pred HHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 688999998-5228987997298888899999998388852334799998-41466899999999999999999980898
Q gi|254781020|r 245 TPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 245 ~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 322 (337)
++++|++++ .+++++||++|||||+|.||+||||||||+|++||||+|+ +.+|++||.++++.|++||+..|.++|++
T Consensus 210 t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~KAlALGA~~V~iGRp~l~ala~~G~~Gv~~~l~~l~~El~~~M~l~G~~ 289 (301)
T pfam01070 210 TIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEILRDELERTMALLGCT 289 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999998567748996387476268999998089866556899999996579999999999999999999985899
Q ss_pred CHHHHHCC
Q ss_conf 57896149
Q gi|254781020|r 323 RVQELYLN 330 (337)
Q Consensus 323 ~i~el~~~ 330 (337)
||+||+..
T Consensus 290 ~i~~l~~~ 297 (301)
T pfam01070 290 SIADLTPS 297 (301)
T ss_pred CHHHCCHH
T ss_conf 97895998
No 9
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=0 Score=404.39 Aligned_cols=285 Identities=22% Similarity=0.279 Sum_probs=236.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
||++ .|++|.|+++|+.+|++|.|+||+| +|++++||+|+|||+++++||++||+ |.+...++.+|.++|++|++.
T Consensus 17 ~Y~~gGa~de~t~~~N~~af~~~~l~PrvL--~dv~~~d~st~llG~~~~~P~~iaP~-g~~~l~hp~gE~a~AraA~~~ 93 (361)
T cd04736 17 DYLEGGAEDEKGLRHNRDAFDRWRFIPRRL--VDVSKRDISASLFGKVWSAPLVIAPT-GLNGAFWPNGDLALARAAAKA 93 (361)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCEECCCC--CCCCCCCCCCCCCCCCCCCCEEECCH-HHHHHHCCCCHHHHHHHHHHC
T ss_conf 998525563599999999998475766223--58878997631588405785478763-577660888429999999987
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH----
Q ss_conf 9906605202211286688899999866401232202752123679989999877650898576253203566520----
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQP---- 162 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 162 (337)
|+++++|+.+..+.++.... .....+.|++.. ..+. .+...+..+..++.++.++++.+......
T Consensus 94 gi~~~lSt~ss~s~EeVa~~--------~~g~~wfQLY~~--~r~~-~~~li~RA~~aG~~alvlTvD~pv~G~Rerd~r 162 (361)
T cd04736 94 GIPFVLSTASNMSIEDVARQ--------ADGDLWFQLYVV--HREL-AELLVKRALAAGYTTLVLTTDVAVNGYRERDLR 162 (361)
T ss_pred CCCEEECCCCCCCHHHHHHH--------CCCCEEEEEEEC--CHHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHH
T ss_conf 98789679999999999862--------599847998872--8799-999999999859986899507888788835432
Q ss_pred -----------------------------CCCC------------------------CHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf -----------------------------6885------------------------24307999999998739971785
Q gi|254781020|r 163 -----------------------------NGNT------------------------NFADLSSKIALLSSAMDVPLLLK 189 (337)
Q Consensus 163 -----------------------------~~~~------------------------~~~~~~~~i~~l~~~~~~pii~k 189 (337)
.+.. ...-.|++++|+|+.|+.|+++|
T Consensus 163 ngf~~P~~~~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wlr~~w~~plilK 242 (361)
T cd04736 163 NGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK 242 (361)
T ss_pred CCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 25678865567788775159388997650277310234677777705788998843688999999999998669974552
Q ss_pred ECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 04786688999999976997999458888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 190 EVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 190 ~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
++ .++++++.|+++|+|+|+|||||| ||+++.+ +++++|+++++.- +.+|+.|||||+
T Consensus 243 GI---~~~eDA~~A~~~G~dgIiVSNHGG---------RQLD~a~---------~~id~Lp~I~~av-~~~V~~DgGIRr 300 (361)
T cd04736 243 GI---VTAEDAKRCIELGADGVILSNHGG---------RQLDDAI---------APIEALAEIVAAT-YKPVLIDSGIRR 300 (361)
T ss_pred CC---CCHHHHHHHHHCCCCEEEECCCCC---------CCCCCCC---------CHHHHHHHHHHHH-CCEEEEECCCCC
T ss_conf 14---899999999876999999758863---------3357774---------1477799999971-994999489887
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 899999998388852334799998-41466899999999999999999980898578961
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
|.||+|||||||++|++|||++|+ +.+|++||++++++|++||+.+|.++||+||+||.
T Consensus 301 G~DV~KALALGA~aV~iGRp~lygLaa~G~~GV~~~l~iL~~El~~~M~l~G~~sv~el~ 360 (361)
T cd04736 301 GSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT 360 (361)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 899999997799989877899998771109999999999999999999985899867769
No 10
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=100.00 E-value=0 Score=399.16 Aligned_cols=280 Identities=24% Similarity=0.278 Sum_probs=237.6
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
||++ .+++|.|+++|+.+|++|.|+||+| +|++++||+|+|||+++++||++||| |++...++.++..+|++|++.
T Consensus 17 ~Y~~gGa~de~t~~~N~~af~~~~l~PRvL--~dv~~~dt~t~llG~~~~~P~~iAP~-g~~~l~~p~GE~~~AraA~~~ 93 (299)
T cd02809 17 DYIDGGAGDEVTLRRNRAAFDRIRLRPRVL--RDVSKRDTSTTLLGQKLAMPFGIAPT-GLQGLAHPDGELATARAAAAA 93 (299)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHCCEECCCC--CCCCCCCCCEEECCCCCCCCEEECCH-HHHCCCCCCHHHHHHHHHHHH
T ss_conf 987156774499999999998364774013--48877887666789768897688852-201256787269999999970
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC
Q ss_conf 99066052022112866888999998664012322027521236799899998776508985762532035665206885
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNT 166 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (337)
|+++++|+.+..+.++.... .+ ...+.|+.. ..+.+... ...+..+..++.++.++++.+.....
T Consensus 94 gi~~~lSt~ss~slEei~~~-------~~-~~~wfQLY~-~~d~~~~~-~li~rA~~aG~~al~lTvD~p~~g~R----- 158 (299)
T cd02809 94 GIPFTLSTVSTTSLEEVAAA-------AP-GPRWFQLYV-PRDREITE-DLLRRAEAAGYKALVLTVDTPVLGRR----- 158 (299)
T ss_pred CCCEECCCCCCCCHHHHHHH-------CC-CCEEEEEEC-CCCHHHHH-HHHHHHHHCCCCEEEEECCCCCCCCC-----
T ss_conf 56431137665668999974-------48-984677643-69999999-99999998599989997058987887-----
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH
Q ss_conf 24307999999998739971785047866889999999769979994588886510012310234432324431063468
Q gi|254781020|r 167 NFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP 246 (337)
Q Consensus 167 ~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~ 246 (337)
-.|++++|+++.|+.|+++|++ .++++++.|.++|+|+|+|||||| ||++..| +++
T Consensus 159 ---~~w~~i~~l~~~~~~p~i~KGi---~~~~DA~~a~~~G~dgI~VSNHGG---------RqlD~~p---------~~i 214 (299)
T cd02809 159 ---LTWDDLAWLRSQWKGPLILKGI---LTPEDALRAVDAGADGIVVSNHGG---------RQLDGAP---------ATI 214 (299)
T ss_pred ---CCHHHHHHHHHHCCCCEEEECC---CCHHHHHHHHHCCCCEEEECCCCC---------CCCCCCC---------CHH
T ss_conf ---9999999999866998799727---889999999985998899728873---------3368887---------789
Q ss_pred HHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 8999998-52289879972988888999999983888523347999984-146689999999999999999998089857
Q gi|254781020|r 247 LSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRV 324 (337)
Q Consensus 247 ~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i 324 (337)
+.|++++ +++++++|+.|||||+|.||+||||||||+|++||||+|++ .+|++||+++++.|++||+..|.++||+||
T Consensus 215 ~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGRp~l~~l~~~G~~Gv~~~~~~l~~El~~~M~l~G~~~i 294 (299)
T cd02809 215 DALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASL 294 (299)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999854672899718847536899999769988987789999988544999999999999999999998489987
Q ss_pred HHHHC
Q ss_conf 89614
Q gi|254781020|r 325 QELYL 329 (337)
Q Consensus 325 ~el~~ 329 (337)
+||..
T Consensus 295 ~~l~p 299 (299)
T cd02809 295 ADLDP 299 (299)
T ss_pred HHCCC
T ss_conf 77798
No 11
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=0 Score=369.19 Aligned_cols=309 Identities=31% Similarity=0.411 Sum_probs=259.4
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHH
Q ss_conf 57899999--8530255897475688630324557899810174629989896256868501266334300025699999
Q gi|254781020|r 4 DRKIDHIN--IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAI 81 (337)
Q Consensus 4 ~~~~~~i~--~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~ 81 (337)
.||.+|+. .+.+|.++++|+.+|+++.|+||+||+++ ++||+|+|+|+++++||+++||+++ .++++.++..-++
T Consensus 12 ~~~~~hy~~~~~~~e~t~~~n~~~f~~i~l~~~~L~~v~--~idlst~~~G~~l~~Pi~iapmt~g-~~~~~~ge~~~a~ 88 (360)
T COG1304 12 LPKAFHYIDGGAEDEVTLRRNREAFEDIALRPRVLPEVD--DIDLSTTFLGQKLSAPIIIAPMTGG-GLAHPEGEVINAK 88 (360)
T ss_pred CCHHHHHHHHHCCCCCCHHHHHHHHHHHEEECCCCCCCC--CCCCCEEECCCCCCCCEEEECCCCC-CCCCHHHHHHHHH
T ss_conf 642768998612653007554666634225324578866--5765157558602588788044455-5357356999999
Q ss_pred HHHHHCCEEECCCCHHHHC-----CHHHHHHH-HHHHHCCCHH-HHHCCCCCCCCCCC----CHHHHHHHHHHHCCCEEE
Q ss_conf 9998099066052022112-----86688899-9998664012-32202752123679----989999877650898576
Q gi|254781020|r 82 AAEKTKVAMAVGSQRVMFS-----DHNAIKSF-ELRQYAPHTV-LISNLGAVQLNYDF----GVQKAHQAVHVLGADGLF 150 (337)
Q Consensus 82 aa~~~g~~~~~g~~~~~~~-----~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 150 (337)
+|...+.++..++.+.... .+....+| ..++.+++.+ ...|.+..++.... ..+..+...+...++++.
T Consensus 89 ~A~~a~~~~i~s~~gs~~ie~~~~~~~~q~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a~~~~ 168 (360)
T COG1304 89 LAAAAGEPFILSTVGSQRIEEVAAAPPFQLYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISAPALA 168 (360)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 99980887010032557299952171545565987776499999999669840363157542678899998534777201
Q ss_pred ECCCCHHHHHHHCCCCCHHH-----------------HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 25320356652068852430-----------------7999999998739971785047866889999999769979994
Q gi|254781020|r 151 LHLNPLQEIIQPNGNTNFAD-----------------LSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
.+.+..|+..++.++..+.. .|+++.|+++.|..|++.|++ .+++|++.+.+.|+|+|++
T Consensus 169 ~h~n~~qe~~~p~g~~~~~~~~~~i~~~~~~~~~P~i~ked~~~i~~~~~~~lv~kGV---~~~~D~~~a~~tg~~~I~v 245 (360)
T COG1304 169 IHLNVLQEATQPEGDRDGKGGLDSIAEYVSALSVPVISKEDGAGISKEWAGPLVLKGI---LAPEDAAGAGGTGADGIEV 245 (360)
T ss_pred CCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCC---CCHHHHHHHCCCCCEEEEE
T ss_conf 3354778734876665653004589999984378733377776787750775877478---9788887633688228999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 58888651001231023443232443106346889999985-22898799729888889999999838885233479999
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
+|||| | ++++|+|++++|++++. +.++++|++|||||+|.||+|||||||++|++||||||
T Consensus 246 snhgg---------r---------qlD~g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~ 307 (360)
T COG1304 246 SNHGG---------R---------QLDWGISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLY 307 (360)
T ss_pred ECCCC---------C---------CCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 76787---------4---------02578776999999999718871799638878778999999937765452599999
Q ss_pred HH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 84-146689999999999999999998089857896149600056
Q gi|254781020|r 293 PA-MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 293 ~~-~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
++ .+|++||.++++.|.+||+.+|.++|++||+||++..+.+..
T Consensus 308 ~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l~~~~ 352 (360)
T COG1304 308 GLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPLVLSG 352 (360)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCEEECC
T ss_conf 998556878999999999999999974288819996557366124
No 12
>KOG0538 consensus
Probab=100.00 E-value=0 Score=368.21 Aligned_cols=296 Identities=22% Similarity=0.252 Sum_probs=247.0
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHH
Q ss_conf 99999-85302558974756886303245578998101746299898962568685012663343000256999999998
Q gi|254781020|r 7 IDHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEK 85 (337)
Q Consensus 7 ~~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~ 85 (337)
-||+. .|+|+.|++.|..+|.+|.|+||+| +|++++|+||+++|++++.||++|| ++.+.+.++.+|...|++|.+
T Consensus 20 ~dyy~sgA~d~~Tl~~N~~AF~ri~~rPr~L--~dV~~iD~sTtvlG~~i~~Pi~iap-Ta~qkma~pdGE~~taraa~~ 96 (363)
T KOG0538 20 YDYYESGAEDQETLDENINAFRRILFRPRIL--RDVSKIDTSTTVLGQKISAPIMIAP-TAMQKMAHPDGELATARAAQA 96 (363)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHCCCHHH--EECCCCCCCEEECCCCCCCEEEECC-HHHHHCCCCCCCHHHHHHHHH
T ss_conf 9998447764021877899987550142143--0025355410331401264168751-667660488622788898865
Q ss_pred HCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHC--
Q ss_conf 099066052022112866888999998664012322027521236799899998776508985762532035665206--
Q gi|254781020|r 86 TKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPN-- 163 (337)
Q Consensus 86 ~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 163 (337)
.|+++.+++.++++.++.. ...+....++++.. +.+.+.+ +...+..|+.+.+++.++++.|--.....
T Consensus 97 ~~~~~i~Ss~at~S~EdI~-------~aap~~~rwfQLYv-ykdr~It-~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~ 167 (363)
T KOG0538 97 AGTIMILSSWATCSVEDIA-------SAAPPGIRWFQLYV-YKDRDIT-EQLVKRAEKAGFKALVLTVDTPRLGRRESDI 167 (363)
T ss_pred CCCCEEEECCHHCCHHHHH-------HHCCCCCEEEEEEE-CCCHHHH-HHHHHHHHHCCCEEEEEEECCCCCCCCHHHH
T ss_conf 6985897310107899998-------51887737999985-3744689-9999999972966999983461126760444
Q ss_pred ------------------------------------CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf ------------------------------------88524307999999998739971785047866889999999769
Q gi|254781020|r 164 ------------------------------------GNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG 207 (337)
Q Consensus 164 ------------------------------------~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG 207 (337)
.....+-.|++++|+++.|..|+++|++. +.++++.|+|+|
T Consensus 168 ~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~T~lPIvvKGil---t~eDA~~Ave~G 244 (363)
T KOG0538 168 KNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSITKLPIVVKGVL---TGEDARKAVEAG 244 (363)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCEEEEEEC---CCHHHHHHHHHC
T ss_conf 40256874210026555665567866313466664237887777424699985275876998311---438799999808
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 979994588886510012310234432324431063468899999-8522898799729888889999999838885233
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
+++|+|||||| ||++..++ ++++|+++ +++.+++||..|||+|+|.||+|||||||..|++
T Consensus 245 ~~GIIVSNHGg---------RQlD~vpA---------tI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~Vfi 306 (363)
T KOG0538 245 VAGIIVSNHGG---------RQLDYVPA---------TIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFI 306 (363)
T ss_pred CCEEEEECCCC---------CCCCCCCC---------HHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCEEEE
T ss_conf 86599857875---------32576641---------1887999999862854799726733542799998516736885
Q ss_pred HHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf 4799998-414668999999999999999999808985789614960005
Q gi|254781020|r 287 ASPFLKP-AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIR 335 (337)
Q Consensus 287 Gr~~l~~-~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~ 335 (337)
|||++|+ +..|+.||.+++++|++|+..+|++.||+||.|+...+.++.
T Consensus 307 GRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~~v~~~ 356 (363)
T KOG0538 307 GRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRNHVLTE 356 (363)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEC
T ss_conf 67210200025603299999999999999999847860654074525401
No 13
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=100.00 E-value=0 Score=297.76 Aligned_cols=293 Identities=18% Similarity=0.187 Sum_probs=226.4
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 9999-853025589747568863032455789981017462998989625686850126633430002569999999980
Q gi|254781020|r 8 DHIN-IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKT 86 (337)
Q Consensus 8 ~~i~-~a~~e~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~ 86 (337)
.||. .++|++|++.|-++|..-+|+||.+ .+++++||+++|.|.++++||++||++. ..+.+...|.+.|++..++
T Consensus 33 ~YIA~~agD~fT~r~N~Raf~HKL~~P~~~--~~VE~P~T~~~~~G~~l~~P~I~APvAA-H~LA~~~~E~atAr~v~EF 109 (368)
T TIGR02708 33 GYIASGAGDTFTLRENIRAFNHKLIVPHLL--QDVENPSTEIEFLGEKLKSPLIMAPVAA-HKLANEQGEVATARGVSEF 109 (368)
T ss_pred CCCCCCCCCCHHHHHCCHHHCCCCCCCHHH--CCCCCCCCEEEECCCEECCCEEECCHHH-HHHHHCCCCHHHHHHHHHC
T ss_conf 330136665122443102232420135233--0467887316762641048604411576-4331001201221002120
Q ss_pred CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHH--------
Q ss_conf 990660520221128668889999986640123220275212367998999987765089857625320356--------
Q gi|254781020|r 87 KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQE-------- 158 (337)
Q Consensus 87 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 158 (337)
|..+.+++.++...+|.... -...+.|.++... ++-..+. .+.-..+..|+.++.++-+..-.
T Consensus 110 G~i~~~S~YS~~~l~EIS~a-------L~G~P~WFQ~Y~~-KDD~~NR-~I~D~~Ka~G~~AIvLTADaTV~GNR~~D~~ 180 (368)
T TIGR02708 110 GSIYTTSSYSTADLPEISEA-------LNGTPHWFQFYMS-KDDGINR-DILDRVKADGAKAIVLTADATVGGNREVDKR 180 (368)
T ss_pred CCCEEEECCCCCCHHHHHHH-------HCCCCCEEEEEEE-CCCCCCH-HHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 31001101246767999976-------2799715888874-0343334-6788875278528997214633577441355
Q ss_pred --HHHHCCCC----------CH------------HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf --65206885----------24------------3079999999987399717850478668899999997699799945
Q gi|254781020|r 159 --IIQPNGNT----------NF------------ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 159 --~~~~~~~~----------~~------------~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
-+-+.|.+ .+ .-...+++.+....+.|+.||++ ..+|++.++++|||.+|||+
T Consensus 181 N~FVfP~GMPIV~~YL~G~~~G~s~~~vY~~aKQ~lsprDiE~IA~ySGLPVyVKG~---Q~~ED~~~al~AGASGIWV~ 257 (368)
T TIGR02708 181 NGFVFPVGMPIVQEYLPGEGAGKSLDYVYKSAKQKLSPRDIEEIAAYSGLPVYVKGP---QCPEDADRALKAGASGIWVT 257 (368)
T ss_pred CCEEECCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECC---CCHHHHHHHHHCCCCEEEEE
T ss_conf 873611556033310788767740666665541157810089997217983686078---88668999997288625760
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-
Q ss_conf 8888651001231023443232443106346889999985228987997298888899999998388852334799998-
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP- 293 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~- 293 (337)
|||| ||+.+.|+.++....+ +..+..+|||+.|+|||+|.||+||||-|||.|.+|||.+|.
T Consensus 258 NHG~---------RQl~~~PaaFD~L~~v--------AE~V~~rVPIVFDSGvRRG~Hv~KALASGAD~VAlGRPv~yGL 320 (368)
T TIGR02708 258 NHGG---------RQLDGGPAAFDSLQEV--------AEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGL 320 (368)
T ss_pred CCCC---------CCCCCCCCCCHHHHHH--------HHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 4775---------0236787520006999--------9985285566850884325789998723564430132356665
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 414668999999999999999999808985789614960
Q gi|254781020|r 294 AMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTA 332 (337)
Q Consensus 294 ~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~ 332 (337)
+++|.-|+.++++.|++||+..|+++|..+|+|++.=.+
T Consensus 321 AlGG~~G~~~V~~~l~~~L~~VMQL~G~Q~i~D~K~~~L 359 (368)
T TIGR02708 321 ALGGSVGARQVLEYLNKELKRVMQLTGTQTIEDVKGLDL 359 (368)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
T ss_conf 501022189999999988777764138751565321413
No 14
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.8e-39 Score=250.72 Aligned_cols=280 Identities=18% Similarity=0.212 Sum_probs=191.9
Q ss_pred HHHHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHC
Q ss_conf 475688630324557899810174629989-8962568685012663343000256999999998099066052022112
Q gi|254781020|r 22 NKKFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFS 100 (337)
Q Consensus 22 n~~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~ 100 (337)
.-..|||+.|+|.. +++++++|||+|+|. +.+|++||+.|||+..+. ..+|.+.++.|...++.-. +..
T Consensus 8 ~altfDDVlLvP~~-stv~p~dVdlst~lt~~i~l~iPivSs~MDTVte-------~~mAiama~~GGlGViHrn--~~i 77 (404)
T PRK06843 8 EALTFDDVSLIPRK-SSILPSEVSLKTQLTKNISLNIPFLSSAMDTVTE-------SQMAIAIAKEGGIGIIHKN--MSI 77 (404)
T ss_pred CCCCCCCEEECCCC-CCCCHHHCEEEEEEECCEECCCCEEECCCCCCCC-------HHHHHHHHHCCCEEEECCC--CCH
T ss_conf 36883207985888-8777667067689728816599878468877788-------9999999988988999188--999
Q ss_pred CHHHHHHHHHHHH----------------------------------------CCCHHHHHCCC-CCCCCCCCCHHHHHH
Q ss_conf 8668889999986----------------------------------------64012322027-521236799899998
Q gi|254781020|r 101 DHNAIKSFELRQY----------------------------------------APHTVLISNLG-AVQLNYDFGVQKAHQ 139 (337)
Q Consensus 101 ~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 139 (337)
++...+...++.. .+......+-. ...-....+.+...+
T Consensus 78 e~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~a~~d~~~rl~VgAAVg~~~d~~er 157 (404)
T PRK06843 78 EAQKKEIEKVKTYKFQKTINTNKDTNEQKTKMLTAKQHLEESKIYKNAEHKEDFPNACKDLNSKLRVGAAVSIDIDTIER 157 (404)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHH
T ss_conf 99999998874112464120265432024566658765223244441676644134455432467689995468528999
Q ss_pred H--HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7--76508985762532035665206885243079999999987399717850478668899999997699799945888
Q gi|254781020|r 140 A--VHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRG 217 (337)
Q Consensus 140 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~g 217 (337)
+ .-..++|.+.+.. .+.+.....+.++++|+.++...++ +||+.+++.++.++++|||+|.|+-.+
T Consensus 158 a~~Lv~AGvD~lvID~----------AhGhs~~~~e~ik~ik~~~p~v~VI--aGNVaT~~~a~~Li~aGAD~VkVGiGp 225 (404)
T PRK06843 158 VEELVKAHVDILVIDS----------AHGHSTRIIELVKTIKNKYPNLDLI--AGNIVTKEAALDLINVGADCLKVGIGP 225 (404)
T ss_pred HHHHHHCCCCEEEEEC----------CCCCHHHHHHHHHHHHHHCCCCCEE--ECCCCCHHHHHHHHHHCCCEEEECCCC
T ss_conf 9999976999999968----------8752178999999999767996166--303057999999998198999956547
Q ss_pred CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-
Q ss_conf 86510012310234432324431063468899999852--289879972988888999999983888523347999984-
Q gi|254781020|r 218 GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY--CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA- 294 (337)
Q Consensus 218 G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~--~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~- 294 (337)
| ++|++| ...+.|+||++|+.+|.+. ..++|||+||||++++|++||||+|||+||+|++|-..-
T Consensus 226 G----siCTTr--------~v~GvGvPq~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KAlA~GAdaVMlGs~lAgt~E 293 (404)
T PRK06843 226 G----SICTTR--------IVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKE 293 (404)
T ss_pred C----CCCCCC--------CCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCC
T ss_conf 8----772566--------5458687489999999999605799788368746532799999718988886713136766
Q ss_pred ---------------------------------------------CCCHH-------HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---------------------------------------------14668-------99999999999999999980898
Q gi|254781020|r 295 ---------------------------------------------MDSSD-------AVVAAIESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 295 ---------------------------------------------~~G~~-------gv~~~l~~l~~el~~~m~~~G~~ 322 (337)
.+|.+ .|.+.+.+|.+.||+.|+|+|++
T Consensus 294 aPG~~~~~~G~~~K~yrGMgS~~Am~~g~~~ry~~~~~~~~~~~~~eGv~~~vp~~G~v~~~~~~l~gglrs~m~y~Ga~ 373 (404)
T PRK06843 294 SPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAA 373 (404)
T ss_pred CCCCEEEECCEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99737857894878873475399986447100023345643354678567961788888999999998998706285777
Q ss_pred CHHHHHCCCCCCC
Q ss_conf 5789614960005
Q gi|254781020|r 323 RVQELYLNTALIR 335 (337)
Q Consensus 323 ~i~el~~~~~~i~ 335 (337)
||+|||.+..|+|
T Consensus 374 ~i~el~~~~~fv~ 386 (404)
T PRK06843 374 TISDLKINSKFVK 386 (404)
T ss_pred CHHHHHHCCEEEE
T ss_conf 5999974998999
No 15
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.7e-39 Score=250.84 Aligned_cols=284 Identities=17% Similarity=0.163 Sum_probs=180.1
Q ss_pred HHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHH--H
Q ss_conf 74756886303245578998101746299898962568685012663343000256999999998099066052022--1
Q gi|254781020|r 21 RNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRV--M 98 (337)
Q Consensus 21 ~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~--~ 98 (337)
+.-..|||++|+|.. +.+.+++|||+|++.+++|++||+.|||+..+ +..+|.+.++.|...++.-... .
T Consensus 12 ~~altFDDVLLvP~~-s~v~p~dvd~st~l~~i~L~iPivSAaMDTVT-------E~~MAIamA~~GGiGVIH~~~i~~R 83 (368)
T PRK08649 12 RRAYGLDEIAIVPSR-RTRDPEDVSTAWQIDAYRFEIPIIASPMDAVV-------SPETAIELGRLGGLGVLNLEGLWTR 83 (368)
T ss_pred CCCCCCCCEEECCCC-CCCCHHHCEEEEEECCEEECCCEECCCCCCCC-------CHHHHHHHHHCCCCEEEECCCCEEE
T ss_conf 002672537975787-75587566221887688878857768876667-------8999999998799689932212310
Q ss_pred HCCHHH--HHH--------HHH-HHH--CCCHHH-----HH-----CCCCCCCCCCCCHHHHHHHHHHHCCCEEEECC--
Q ss_conf 128668--889--------999-986--640123-----22-----02752123679989999877650898576253--
Q gi|254781020|r 99 FSDHNA--IKS--------FEL-RQY--APHTVL-----IS-----NLGAVQLNYDFGVQKAHQAVHVLGADGLFLHL-- 153 (337)
Q Consensus 99 ~~~~~~--~~~--------~~~-~~~--~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 153 (337)
+.+++. .+. ... .+. .+.... .. ...........+..+..+.....+.|.+.+..
T Consensus 84 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~~pi~~~li~~ri~~~k~~g~~~a~~~~~~~~~~~~~~Lv~aGvDvlvId~~v 163 (368)
T PRK08649 84 YEDPEPVLDEIASVGKDAATRLMQELYAEPIKPELIGKRIAEIRDAGVIAAVSLSPQNAQKLGPTVVEAGADLFVIQGTV 163 (368)
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 28878888988703288889999998754672889998999876428579999624638999999997499889984147
Q ss_pred -CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCC
Q ss_conf -2035665206885243079999999987399717850478668899999997699799945888865100123102344
Q gi|254781020|r 154 -NPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLES 232 (337)
Q Consensus 154 -~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~ 232 (337)
+..+. .+.....+. +...+..+.+++ .||+.+++.++.++++|||+|.|+-..| ++|++|-
T Consensus 164 vd~aH~-------~~~~~~l~~-~~~~~~~~v~vI---aGNVaT~e~a~~Li~aGADaVKVGIGpG----SICTTRv--- 225 (368)
T PRK08649 164 VSAEHV-------SEGGEPLNL-KEFIYELDVPVV---VGGCVTYTTALHLMRTGAAGVLVGIGPG----AACTSRG--- 225 (368)
T ss_pred EEEHHH-------CCCCHHHHH-HHHHCCCCCCEE---EECCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCCC---
T ss_conf 540222-------032035656-643123798789---7344699999999977998999456688----7756634---
Q ss_pred CCCHHHHHCCCCHHHHHHHHHHHCC---------CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH----------
Q ss_conf 3232443106346889999985228---------987997298888899999998388852334799998----------
Q gi|254781020|r 233 DIGIVFQDWGIPTPLSLEMARPYCN---------EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP---------- 293 (337)
Q Consensus 233 ~~~~~~~~~gi~~~~al~~~~~~~~---------~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~---------- 293 (337)
..+.|+||++|+.+|++++. +||||+|||||+.+|++|||++|||+||+|+.|-..
T Consensus 226 -----VaGvGvPQltAI~~~a~a~~~y~~~~~g~~VpvIADGGIr~sGDi~KAlaaGA~~VMlGsllAGt~EsPG~~~~~ 300 (368)
T PRK08649 226 -----VLGIGVPMATAIADCAAARRDYLDETGGRYVHVIADGGIVTSGDICKAIACGADAVMLGSPLARAAEAPGRGFHW 300 (368)
T ss_pred -----EECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC
T ss_conf -----012572169999999999886556526854648956885864189999872899898773104766689876443
Q ss_pred --------HCCCHH-------HHHHHH----------HHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf --------414668-------999999----------999999999999808985789614960005
Q gi|254781020|r 294 --------AMDSSD-------AVVAAI----------ESLRKEFIVSMFLLGTKRVQELYLNTALIR 335 (337)
Q Consensus 294 --------~~~G~~-------gv~~~l----------~~l~~el~~~m~~~G~~~i~el~~~~~~i~ 335 (337)
..+|.+ .+..++ ++|.+.||+.|+|+|++||+|||+....|.
T Consensus 301 gm~~~~~~~peG~~~~v~~~g~~~~vi~g~~~~~d~v~qlvGGLrs~MgY~Ga~~i~elqka~~v~~ 367 (368)
T PRK08649 301 GMAAPHPVLPRGTRIQVGTTGSLEQILFGPADLPDGTHNLLGALRRSMATLGYSDLKEFQKVEVVVA 367 (368)
T ss_pred CCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEC
T ss_conf 3346776689963885576650656124777675338886779988630237470888733236948
No 16
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=100.00 E-value=1.7e-38 Score=245.07 Aligned_cols=271 Identities=19% Similarity=0.207 Sum_probs=194.7
Q ss_pred HHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCH
Q ss_conf 5688630324557899810174629989-896256868501266334300025699999999809906605202211286
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDH 102 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~ 102 (337)
..||||.|+|... ++++++|||+|+|. ..++++||+.|||+..+. ..+|.+.++.|...++.-.. ..++
T Consensus 2 l~fdDVllvP~~s-~~~r~~Vdl~~~~~~~~~l~iPIissnMDtV~~-------~~mA~~la~~Gglgvlhr~~--~~e~ 71 (325)
T cd00381 2 LTFDDVLLVPGYS-TVLPSEVDLSTKLTKNITLNIPLVSAPMDTVTE-------SEMAIAMARLGGIGVIHRNM--SIEE 71 (325)
T ss_pred CCCCCEEEECCCC-CCCHHHCEEEEEECCCCCCCCCEEECCCCCCCC-------HHHHHHHHHCCCEEEEECCC--CHHH
T ss_conf 8831178807888-788889267688418814489888678887588-------99999999779968994358--8899
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC
Q ss_conf 68889999986640123220275212367998999987765089857625320356652068852430799999999873
Q gi|254781020|r 103 NAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM 182 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 182 (337)
.... +........+.+.++ ..+.+.+...... ..+++.+.+...+ .+.....+.++++|+.+
T Consensus 72 ~~~~---v~~vk~~~~v~aaig----~~~~~~~r~~~l~-~ag~d~i~IDvAh----------G~~~~~~~~ik~ir~~~ 133 (325)
T cd00381 72 QAEE---VRKVKGRLLVGAAVG----TREDDKERAEALV-EAGVDVIVIDSAH----------GHSVYVIEMIKFIKKKY 133 (325)
T ss_pred HHHH---HHHHHCCEEEEEEEC----CCHHHHHHHHHHH-HCCCCEEEEECHH----------CCCHHHHHHHHHHHHHC
T ss_conf 9999---997504769999976----6862899999999-7699899987000----------34588999999999768
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC--CCE
Q ss_conf 997178504786688999999976997999458888651001231023443232443106346889999985228--987
Q gi|254781020|r 183 DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN--EAQ 260 (337)
Q Consensus 183 ~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~--~v~ 260 (337)
+..+++ +||+.+++.++.++++|||+|.|+-.+|. +|++| ...+.|+||++++.+|++++. ++|
T Consensus 134 p~~~Ii--aGNV~T~e~a~~L~~~GaD~vkVGiG~GS----~CtTr--------~~tGvG~Pq~sai~~~a~~~~~~~v~ 199 (325)
T cd00381 134 PNVDVI--AGNVVTAEAARDLIDAGADGVKVGIGPGS----ICTTR--------IVTGVGVPQATAVADVAAAARDYGVP 199 (325)
T ss_pred CCCCEE--ECCCCCHHHHHHHHHCCCCEEEECCCCCC----CCCCC--------CCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 997568--64566899999998669989997575777----76660--------10178874588999999976344985
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-------------------------------------------CCC
Q ss_conf 9972988888999999983888523347999984-------------------------------------------146
Q gi|254781020|r 261 FIASGGLRNGVDILKSIILGASLGGLASPFLKPA-------------------------------------------MDS 297 (337)
Q Consensus 261 IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~-------------------------------------------~~G 297 (337)
||+||||++.+|++|||++|||+||+|+.|-..- .+|
T Consensus 200 iiaDGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~y~Gm~S~~a~~~~~~~~~~~~~~~~~~~eG 279 (325)
T cd00381 200 VIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVPEG 279 (325)
T ss_pred EEECCCCCCHHHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 89448733107888887528878984621046666896158763827889978765433165776543455551014896
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 6-------89999999999999999998089857896149600056
Q gi|254781020|r 298 S-------DAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 298 ~-------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
. -.+.+.+.++.+.||+.|+++|++||+|||++..|+|.
T Consensus 280 ~~~~v~~~g~v~~~~~~l~gglrs~m~y~Ga~~l~e~~~~~~fv~v 325 (325)
T cd00381 280 VEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEKARFVRI 325 (325)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEC
T ss_conf 3899867886788999999999898732586739999757879969
No 17
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=100.00 E-value=6.4e-39 Score=247.49 Aligned_cols=157 Identities=20% Similarity=0.187 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
Q ss_conf 85243079999999987399717850478668899999997699799945888865100123102344323244310634
Q gi|254781020|r 165 NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP 244 (337)
Q Consensus 165 ~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~ 244 (337)
|.+.....+.++++|+.++...++ +||+.+++.++.++++|||+|.|+-..| ++|++|. ..+.|+|
T Consensus 245 hGhs~~vi~~ik~ik~~~p~~~iI--aGNVaT~e~a~~Li~aGAD~vKVGiGpG----SiCTTR~--------v~GvG~P 310 (467)
T pfam00478 245 HGHSEYVLEMIKWIKKKYPDLDVI--AGNVVTAEAARELIDAGADAVKVGIGPG----SICTTRE--------VAGVGRP 310 (467)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEE--EEEECCHHHHHHHHHHCCCEEEECCCCC----CCCCCCC--------CCCCCCC
T ss_conf 544188999999987407877378--5100589999999970777577556688----6565642--------0366775
Q ss_pred HHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-------------------------H---
Q ss_conf 688999998522--8987997298888899999998388852334799998-------------------------4---
Q gi|254781020|r 245 TPLSLEMARPYC--NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP-------------------------A--- 294 (337)
Q Consensus 245 ~~~al~~~~~~~--~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~-------------------------~--- 294 (337)
|++|+.+|++++ .++|||+|||||+.+|++||||+|||+||+|+.|-.. +
T Consensus 311 Q~tAv~~~a~~a~~~~vpiIADGGi~~sGDi~KAlaaGAd~VMlGsllAGt~EsPG~~~~~~G~~yK~yrGMgS~~Am~~ 390 (467)
T pfam00478 311 QLTAVYEVADAARKLGVPVIADGGIRYSGDIAKALAAGASAVMLGSLLAGTEESPGEYIERNGRRYKEYRGMGSLGAMEK 390 (467)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHCCCCCCCCEEEEECCEEEEEEECCCCHHHHHH
T ss_conf 08799999999865698799447623304899998728988987722257777995079589989898745687999974
Q ss_pred -----------------CCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf -----------------14668-------999999999999999999808985789614960005
Q gi|254781020|r 295 -----------------MDSSD-------AVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIR 335 (337)
Q Consensus 295 -----------------~~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~ 335 (337)
.+|.+ .|.+++.+|...||+.|+|+|++||+|||.+..|+|
T Consensus 391 ~~g~~~rY~~~~~~~~v~eGveg~vpykG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~~a~fvr 455 (467)
T pfam00478 391 HKGSKDRYFQAGDKKGVPEGVEGRVPYKGSVKDTIHQLLGGLRSSMGYVGAASLKELREKAFFVR 455 (467)
T ss_pred CCCCCHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEE
T ss_conf 25760112213453557885189735777689999999888766221768776999975898999
No 18
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=100.00 E-value=3.6e-38 Score=243.10 Aligned_cols=158 Identities=21% Similarity=0.201 Sum_probs=129.0
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
Q ss_conf 85243079999999987399717850478668899999997699799945888865100123102344323244310634
Q gi|254781020|r 165 NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP 244 (337)
Q Consensus 165 ~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~ 244 (337)
|.+.....+.++++++.++...++ +||+.+++.++.++++|||+|.|+-..| ++|++|. ..+.|+|
T Consensus 260 hGhs~~v~~~ik~ik~~~p~v~vI--aGNVaT~~~a~~Li~aGAD~vkVGiGpG----SiCTTR~--------v~GvGvP 325 (499)
T PTZ00314 260 QGNSIYQIDFIKWIKSTYPHLEVI--AGNVVTQDQAKNLIDAGADGIRIGMGSG----SICTTQE--------VCAVGRP 325 (499)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEE--EEEECHHHHHHHHHHCCCCEEEECCCCC----CCCCCCC--------CCCCCCC
T ss_conf 877278999999988527988467--6433109999999974998799753588----5510464--------3466786
Q ss_pred HHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-------------------------H---
Q ss_conf 688999998522--8987997298888899999998388852334799998-------------------------4---
Q gi|254781020|r 245 TPLSLEMARPYC--NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP-------------------------A--- 294 (337)
Q Consensus 245 ~~~al~~~~~~~--~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~-------------------------~--- 294 (337)
|++|+.+|+++. .++|||+|||||+++|++||||+|||+||+|+.|-.. +
T Consensus 326 q~tAv~~~a~~a~~~gvpiIADGGIr~sGDi~KAlAaGAd~VMlGsllAGt~EsPGe~~~~~G~~yK~YRGMgS~~Am~~ 405 (499)
T PTZ00314 326 QATAVYKVARYAHSRGVPCIADGGIRSSGDIVKALALGASCVMLGSMLAGTEETPGEYFFKNGVRLKKYRGMGSLEAMSQ 405 (499)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCEEEEEEEECCHHHHHHH
T ss_conf 05679999998644998599147846431899998728987860841047677997289999999999971043999974
Q ss_pred -----------------CCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC-----CCCCCC
Q ss_conf -----------------14668-------9999999999999999998089857896149-----600056
Q gi|254781020|r 295 -----------------MDSSD-------AVVAAIESLRKEFIVSMFLLGTKRVQELYLN-----TALIRH 336 (337)
Q Consensus 295 -----------------~~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~~-----~~~i~~ 336 (337)
.+|.| .|.+++.+|...||+.|+|+|++||+|||.+ ..|+|.
T Consensus 406 ~~gs~~ry~~~~~~~~v~EGveg~vp~kG~v~~~l~ql~gGlrs~m~Y~Ga~~i~el~~k~~~g~~~f~~~ 476 (499)
T PTZ00314 406 GKGSGSRYLSEEEKIQVAQGVSGSVVDKGSVLKLIPYLTKGVKHGAQDIGEISIDALREKLYSGQVRFERR 476 (499)
T ss_pred CCCCCCHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 44663001121036747776779866688789999999858764041768786999986412677269998
No 19
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=100.00 E-value=3.4e-38 Score=243.22 Aligned_cols=149 Identities=18% Similarity=0.207 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH
Q ss_conf 24307999999998739971785047866889999999769979994588886510012310234432324431063468
Q gi|254781020|r 167 NFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP 246 (337)
Q Consensus 167 ~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~ 246 (337)
+..+..+.++|+|+.++.-.++ .||+.+.+-++.+++||||++-|+-..| ++|++|. ..++|+||+
T Consensus 263 hs~~vl~~ik~~k~~Yp~~~ii--aGNVaT~~~a~~LI~AgADg~rVGiGpG----SICTTr~--------V~gVGvPQ~ 328 (476)
T TIGR01302 263 HSIYVLDSIKKIKKTYPDLDII--AGNVATAEQAKALIDAGADGLRVGIGPG----SICTTRI--------VAGVGVPQI 328 (476)
T ss_pred CCHHHHHHHHHHHHHCCEEEEE--ECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCEEEE--------EEECCCHHH
T ss_conf 5378999999998638805799--4344117889889852888789836889----8110015--------651276268
Q ss_pred HHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH--------------------------HH----
Q ss_conf 8999998522--898799729888889999999838885233479999--------------------------84----
Q gi|254781020|r 247 LSLEMARPYC--NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK--------------------------PA---- 294 (337)
Q Consensus 247 ~al~~~~~~~--~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~--------------------------~~---- 294 (337)
+|+.+|++.+ ..||||||||||+.+|++|||||||||||+|+-+-. |.
T Consensus 329 TAv~~Va~~A~~~Gi~VIADGGIr~SGDivKAlAaGA~aVMlGslLAGT~EsPGe~~~~nGrryK~YRGMGS~gAM~~~g 408 (476)
T TIGR01302 329 TAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPGEYYIINGRRYKSYRGMGSLGAMENKG 408 (476)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCEEHHCCCCCCCCCCCCCEEEECCEEEEEECCCCHHHHHCCCC
T ss_conf 89999999997279909983775625589999981677220234210163388726996687898752853088864788
Q ss_pred --------------------------CCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf --------------------------14668-------999999999999999999808985789614
Q gi|254781020|r 295 --------------------------MDSSD-------AVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 295 --------------------------~~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
.+|-| .|.++|.+|...||.+|+++|++||+|||.
T Consensus 409 ~gS~~RY~~~~~~neytDen~~~~~VpeGVeG~VpyKGsv~~~l~ql~gGL~~gmg~~G~~~i~~l~~ 476 (476)
T TIGR01302 409 KGSSDRYLQEENKNEYTDENEDKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGYVGARSIDELRE 476 (476)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCC
T ss_conf 76665533577624345661012407765067417665556677788899996343314255798809
No 20
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=240.30 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
Q ss_conf 85243079999999987399717850478668899999997699799945888865100123102344323244310634
Q gi|254781020|r 165 NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP 244 (337)
Q Consensus 165 ~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~ 244 (337)
|.+.....+.++++++.++...++ +||+.+++.++.++++|||+|.|+-.+| ++|++|. ..+.|+|
T Consensus 250 hGhs~~vi~~ik~ik~~~~~v~vi--aGNv~T~~~a~~L~~aGaD~vkVGiG~G----siCtTr~--------v~GvGvP 315 (486)
T PRK05567 250 HGHSEGVLDRVREIKAKYPDVQII--AGNVATAEAARALIEAGADAVKVGIGPG----SICTTRI--------VAGVGVP 315 (486)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEE--EEEECHHHHHHHHHHCCCCEEEECCCCC----CCCCCCC--------CCCCCCC
T ss_conf 521577899999997407877368--7512019999999972987699656688----6651343--------2477864
Q ss_pred HHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-------------------------H---
Q ss_conf 688999998522--8987997298888899999998388852334799998-------------------------4---
Q gi|254781020|r 245 TPLSLEMARPYC--NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP-------------------------A--- 294 (337)
Q Consensus 245 ~~~al~~~~~~~--~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~-------------------------~--- 294 (337)
|++|+.+|+++. .++|||+||||++++|++||||+|||+||+|+.|-.. +
T Consensus 316 q~tAv~~~a~~a~~~~v~iIADGGi~~sGdi~KAla~GAd~VMlGs~lAgt~EsPG~~~~~~G~~~K~YRGMgS~~Am~~ 395 (486)
T PRK05567 316 QITAIADAAEAAKKTGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSK 395 (486)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCEEEEEEECCCCHHHHHC
T ss_conf 69999999999986597799648835435799998658988986612147767997268478969999715665998860
Q ss_pred -----------------CCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf -----------------14668-------9999999999999999998089857896149600056
Q gi|254781020|r 295 -----------------MDSSD-------AVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 295 -----------------~~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
.+|.| .|.+++.+|...||+.|+|+|++||+|||.+..|+|-
T Consensus 396 gs~~Ry~q~~~~~~k~v~EGveg~vpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~ka~fv~i 461 (486)
T PRK05567 396 GSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELREKAEFVRI 461 (486)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCEEEEE
T ss_conf 342210002243455157734798605866899999987777540437787769999856979999
No 21
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=8.8e-37 Score=234.92 Aligned_cols=268 Identities=15% Similarity=0.166 Sum_probs=190.4
Q ss_pred HHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCH
Q ss_conf 75688630324557899810174629989896256868501266334300025699999999809906605202211286
Q gi|254781020|r 23 KKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDH 102 (337)
Q Consensus 23 ~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~ 102 (337)
...||||+|+|+.....++++||++++|..++|++||+.|||+... +..+|.+..+.|...++.- ++.
T Consensus 4 aldFdDVLLvPkrS~i~SRseVd~s~~~~~~~~~iPIiaAnMDTV~-------~~~mA~~l~k~GglgvLHR-----~~~ 71 (326)
T PRK05458 4 VFDYEDIQLIPNKCIVNSRSECDTSVTLGPRTFKLPVVPANMQTII-------DEKIAEWLAENGYFYIMHR-----FDP 71 (326)
T ss_pred CCCCCCEEEECCCCCCCCHHHCEEEEEECCCCCCCCEEECCCCCCC-------CHHHHHHHHHCCCEEEEEE-----CCH
T ss_conf 5786658985687877887884367985685227888858989748-------8899999997898689985-----588
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHH--C--CCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 688899999866401232202752123679989999877650--8--985762532035665206885243079999999
Q gi|254781020|r 103 NAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVL--G--ADGLFLHLNPLQEIIQPNGNTNFADLSSKIALL 178 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 178 (337)
+....| ++...... .+.. ...+..-+...+..... + .+.+.+ ...+.+...+.+.++++
T Consensus 72 e~~~~~-~~~~~~~~-~~~~-----iSvGi~~~~~~~i~~l~~~~~~~~~i~i----------DvAhG~~~~~~~~i~~i 134 (326)
T PRK05458 72 EARIPF-IKDMHERG-LIAS-----ISVGVKDDEYDFIDQLAAEGLTPEYITI----------DIAHGHSDSVINMIKHI 134 (326)
T ss_pred HHHHHH-HHHCCCCC-CEEE-----EEECCCHHHHHHHHHHHHCCCCCCEEEE----------ECCCCCHHHHHHHHHHH
T ss_conf 999999-98523237-2799-----9947998999999999856999777999----------80564428999999999
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC--HHHHHHHHHHHC
Q ss_conf 987399717850478668899999997699799945888865100123102344323244310634--688999998522
Q gi|254781020|r 179 SSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP--TPLSLEMARPYC 256 (337)
Q Consensus 179 ~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~--~~~al~~~~~~~ 256 (337)
|+.++..+++ +||+.+++.++.++++|||+|.|+-.+| ++|++|. ..+.|+| |+.++.+|+...
T Consensus 135 k~~~~~~~ii--aGNVaT~e~~~~L~~~Gad~VkVGIG~G----s~CTTR~--------~tGvG~p~~q~sai~~ca~~~ 200 (326)
T PRK05458 135 KKHLPETFVI--AGNVGTPEAVRELENAGADATKVGIGPG----KVCITKI--------KTGFGTGGWQLAALRWCAKAA 200 (326)
T ss_pred HHHCCCCCEE--ECCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCCCC--------CCCCCCCHHHHHHHHHHHHHH
T ss_conf 9878998399--6543189999999974999999677798----7520350--------135477589999999999972
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-------------------------------CCCHH------
Q ss_conf 89879972988888999999983888523347999984-------------------------------14668------
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA-------------------------------MDSSD------ 299 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~-------------------------------~~G~~------ 299 (337)
. .|||+||||++++|++|||++|||+||+|+.|-..- .+|.+
T Consensus 201 ~-~~iiaDGGi~~~GDi~KAla~GAd~VM~G~~~Ag~~EspG~~~~~~g~~~k~y~Gmas~~~~~~~~~~EG~~~~vp~k 279 (326)
T PRK05458 201 R-KPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGETVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHK 279 (326)
T ss_pred C-CCEEEECCCCCCCHHHHHHHCCCCEEEECCHHCCCCCCCCCEEEECCEEEEEEECCCCHHHCCCCCCCCCEEEEECCC
T ss_conf 7-977973685874789999864898898671223777799717978997999987467753478845788748987368
Q ss_pred -HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf -999999999999999999808985789614960005
Q gi|254781020|r 300 -AVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIR 335 (337)
Q Consensus 300 -gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~ 335 (337)
.|.+.+.+|.+.||+.|.|+|+++|+|||+. .+++
T Consensus 280 G~v~~~~~~l~gglrS~m~Y~Ga~~i~el~k~-~~v~ 315 (326)
T PRK05458 280 GSLKDTLTEMQQDLQSSISYAGGKDLDAIRKV-DYVI 315 (326)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCC-CEEE
T ss_conf 88899999998887763337588868896188-8999
No 22
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-36 Score=233.62 Aligned_cols=271 Identities=16% Similarity=0.136 Sum_probs=188.7
Q ss_pred HHHHHHEEECCCCCCCCHHHCCCEEEEC----CEE-ECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHH
Q ss_conf 5688630324557899810174629989----896-25686850126633430002569999999980990660520221
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFDEVDPSVEFL----GKK-LSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVM 98 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~~vdlst~i~----G~~-l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~ 98 (337)
..||||+|+|+.-.-.++++|||+++|- +.. +.+||+.|||+... +..+|.+.++.|...++.-
T Consensus 9 LdFdDVLLvPkrS~i~SRseV~l~~~~~f~~s~~~~~gIPIIaAnMDTV~-------~~~MA~~L~k~Ggl~vLHR---- 77 (347)
T PRK05096 9 LGFKDVLIRPKRSTLKSRSEVELERQFTFKHSGQSWSGVPIIAANMDTVG-------TFEMAKALASFDILTAVHK---- 77 (347)
T ss_pred CCCCCEEEECCCCCCCCHHHEEEEEEEEECCCCCCCCCCCEEECCCCCCC-------CHHHHHHHHHCCCEEEEEC----
T ss_conf 88733688567677778302366788853357774468857967888728-------5899999998798589843----
Q ss_pred HCCH-HHHHHHHHHHHCCCH--HHHHCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEECCCCHHHHHHHCCCCCHHHHHHH
Q ss_conf 1286-688899999866401--23220275212367998999987765-0898576253203566520688524307999
Q gi|254781020|r 99 FSDH-NAIKSFELRQYAPHT--VLISNLGAVQLNYDFGVQKAHQAVHV-LGADGLFLHLNPLQEIIQPNGNTNFADLSSK 174 (337)
Q Consensus 99 ~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (337)
.... +..+.+ ....... .....++. .+.+.+......+. ...+.+.+.+ .+.+...+.+.
T Consensus 78 ~~~~ee~~~~~--~~~~~~~~~~v~vsiGi----~~~d~~r~~~i~~~~~~~~~i~iDv----------A~G~~~~~~~~ 141 (347)
T PRK05096 78 HYSVEEWAAFI--NNSSADVLKHVMVSTGT----SDADFEKTKQILALSPALNFICIDV----------ANGYSEHFVQF 141 (347)
T ss_pred CCCHHHHHHHH--HHCCCCCCCEEEEEEEC----CHHHHHHHHHHHHCCCCCCEEEEEC----------CCCCCHHHHHH
T ss_conf 79899999998--52143446738999917----8789999999995289989899977----------98620889999
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
++++|+.++..+++ +||+.+++.++.++++|||+|.|+-.+| ++|++|. ..+.|+||++++.+|+.
T Consensus 142 i~~ik~~~~~~~ii--aGNvaT~e~~~~L~~~GaD~vkVGIG~G----s~CtTR~--------~tGvG~Pq~sai~~c~~ 207 (347)
T PRK05096 142 VAKAREAWPDKTIC--AGNVVTGEMVEELILSGADIVKVGIGPG----SVCTTRV--------KTGVGYPQLSAVIECAD 207 (347)
T ss_pred HHHHHHHCCCCEEE--CCCHHHHHHHHHHHHCCCCEEEECCCCC----CCCCCCC--------CCCCCCHHHHHHHHHHH
T ss_conf 99999878998088--1431239999999973788999767787----5430452--------23567303789999999
Q ss_pred HC--CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH--------------------------------------H
Q ss_conf 22--8987997298888899999998388852334799998--------------------------------------4
Q gi|254781020|r 255 YC--NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP--------------------------------------A 294 (337)
Q Consensus 255 ~~--~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~--------------------------------------~ 294 (337)
+. .++|||+||||++.+|++|||++|||+||+|+.|-.. .
T Consensus 208 ~~~~~~~~iiaDGGi~~~gDi~KAla~GAd~VM~G~~lAg~~EspG~~~~~~g~~~k~y~Gm~S~~a~~~~~g~~~~~~~ 287 (347)
T PRK05096 208 AAHGLGGMIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEVVEENGEKFMLFYGMSSESAMDRHVGGVAEYRA 287 (347)
T ss_pred HHHCCCCCEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEECCEEEEEEECCCHHHHHHHHCCCCCCCCC
T ss_conf 86057994895688475047999987389889867310377779961895899799999576719888764388775426
Q ss_pred CCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf 14668-------999999999999999999808985789614960005
Q gi|254781020|r 295 MDSSD-------AVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIR 335 (337)
Q Consensus 295 ~~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~ 335 (337)
.+|.+ .|.+.+.+|.+.||+.|.|+|+++|+||+++..|||
T Consensus 288 ~EG~~~~vp~kG~v~~~l~~l~gglrS~m~Y~Ga~~l~el~~~a~fv~ 335 (347)
T PRK05096 288 AEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFIR 335 (347)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEE
T ss_conf 885089972788989999999989877332758775999975898999
No 23
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=100.00 E-value=5.6e-38 Score=241.98 Aligned_cols=286 Identities=18% Similarity=0.197 Sum_probs=204.2
Q ss_pred HHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHH
Q ss_conf 97475688630324557899810174629989896256868501266334300025699999999809906605202211
Q gi|254781020|r 20 DRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMF 99 (337)
Q Consensus 20 ~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~ 99 (337)
.|..+.|||+-++|.. +++|.++|||.+++--++|.+||+.+||++..+. .+|.-..++|..-++...+...
T Consensus 9 ARRaY~ldeIavVpsr-RTrdpk~v~t~W~iDAy~felP~~a~p~Davvsp-------~~ai~lg~lGgLGV~N~EGL~t 80 (376)
T TIGR01304 9 ARRAYALDEIAVVPSR-RTRDPKDVDTAWQIDAYRFELPFLAHPMDAVVSP-------EFAIELGELGGLGVLNLEGLWT 80 (376)
T ss_pred CCCCCCCCCEEECCCC-CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCH-------HHHHHHHHCCCCEEEECCHHHH
T ss_conf 2201255545553874-3487000210010231232465011665442476-------9999987225431541102311
Q ss_pred CCHHHH----HHHHHHHHCCC----HHHHHCCCCCCCCCCCCHH----------------------HHHHHHHHHCCCEE
Q ss_conf 286688----89999986640----1232202752123679989----------------------99987765089857
Q gi|254781020|r 100 SDHNAI----KSFELRQYAPH----TVLISNLGAVQLNYDFGVQ----------------------KAHQAVHVLGADGL 149 (337)
Q Consensus 100 ~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~ 149 (337)
.++... ....+....|+ ...++.+++..++.++--+ .....+-..+.|-+
T Consensus 81 Rh~D~~~~ld~i~~~~~~~P~~~~a~R~LQELyAaPl~~eLl~~ri~~vr~aG~i~Av~lsPq~~~~~a~~vv~AG~DLL 160 (376)
T TIGR01304 81 RHEDPEPLLDKIAEADKEDPDQAEATRLLQELYAAPLKPELLGKRIAEVRDAGVITAVRLSPQNASKLAPVVVEAGADLL 160 (376)
T ss_pred HHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEE
T ss_conf 11377899999998751588478998888998636798647899999997268489998665316788899997173004
Q ss_pred EECCCCHHHHHHHCCCCCH-HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC--CCCCCCCCCHHH
Q ss_conf 6253203566520688524-3079999999987399717850478668899999997699799945--888865100123
Q gi|254781020|r 150 FLHLNPLQEIIQPNGNTNF-ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA--GRGGTSWSRIES 226 (337)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~--~~gG~~~~~~~~ 226 (337)
.+ |.+...--|-.. +.=...++++....+.|+++ |++.+++.+..+|++||-+|+|+ +.||.+..+
T Consensus 161 vI-----qgT~vSaehv~~e~~E~LnLk~fi~eLDvPVv~---Ggv~~Y~~ALhLMRtGAagvlVGfgG~ga~~T~~--- 229 (376)
T TIGR01304 161 VI-----QGTVVSAEHVSSESGEPLNLKKFIQELDVPVVA---GGVVTYTTALHLMRTGAAGVLVGFGGPGAATTTR--- 229 (376)
T ss_pred EE-----HHHHHHHEEECCCCCCCHHHHHHHHHCCCCEEE---CCCCCHHHHHHHHHHCCEEEEECCCCCCCCCCCC---
T ss_conf 20-----012320100468888721488897548988788---3853088999986301137886457887342466---
Q ss_pred HCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC---------CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH---
Q ss_conf 1023443232443106346889999985228---------9879972988888999999983888523347999984---
Q gi|254781020|r 227 HRDLESDIGIVFQDWGIPTPLSLEMARPYCN---------EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA--- 294 (337)
Q Consensus 227 ~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~---------~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~--- 294 (337)
..++..+|+.+|+.+|+++|+ +|+||+||||.+++|++||||||||+||+|+|+-.+.
T Consensus 230 ----------~vLG~~VpmATAiAD~AAARrDYLdEtGGRYVHviADG~i~~sGd~~KAIACGADAV~lGSPLArA~eA~ 299 (376)
T TIGR01304 230 ----------EVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLAKAIACGADAVVLGSPLARAAEAP 299 (376)
T ss_pred ----------CCCEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHEECCCCHHHHCCCHHHHHHCC
T ss_conf ----------5342106726789999973011333068933778862870554630010013776020078025663047
Q ss_pred -------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
Q ss_conf -------------------------------------1466899999999999999999980898578961496000
Q gi|254781020|r 295 -------------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALI 334 (337)
Q Consensus 295 -------------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i 334 (337)
+.||...-.-..||.+.||+.|+.+||++++|||+..+.|
T Consensus 300 G~G~fWg~~a~~p~LPRG~~~~~Gv~~Ge~~Ptl~~iL~GPs~~p~G~~Nl~GaLkramA~~Gy~dLKefQ~V~v~v 376 (376)
T TIGR01304 300 GRGFFWGMAAAHPELPRGKKVDVGVTVGEEAPTLEEILVGPSKLPDGSLNLLGALKRAMAKLGYKDLKEFQKVDVTV 376 (376)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHCCCCCEEEEEC
T ss_conf 88861775258787888737872002178888779873898988788543157899988732522142014110337
No 24
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=1.6e-35 Score=227.48 Aligned_cols=157 Identities=15% Similarity=0.112 Sum_probs=129.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
Q ss_conf 85243079999999987399717850478668899999997699799945888865100123102344323244310634
Q gi|254781020|r 165 NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP 244 (337)
Q Consensus 165 ~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~ 244 (337)
|.+.....+.++++|+..+...++ .||+.+++.++.++++|||+|.|+-..| ++|++| ...+.|+|
T Consensus 249 HGhS~~vi~~vk~iK~~~p~~~vi--aGNvaT~~~a~~Li~aGad~ikvGiG~G----SiCtTr--------~v~gvG~p 314 (479)
T PRK07807 249 HGHQEKMLEAIRAVRALDPGVPLV--AGNVVTAEGTRDLVEAGADIVKVGVGPG----AMCTTR--------MMTGVGRP 314 (479)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCEE--EEEHHHHHHHHHHHHCCCCEEECCCCCC----CCEECC--------CCCCCCCC
T ss_conf 766489999999998408988578--7432029999999973999763155578----324346--------32377886
Q ss_pred HHHHHHHHHHHC--CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-----------------------------
Q ss_conf 688999998522--8987997298888899999998388852334799998-----------------------------
Q gi|254781020|r 245 TPLSLEMARPYC--NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP----------------------------- 293 (337)
Q Consensus 245 ~~~al~~~~~~~--~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~----------------------------- 293 (337)
|++|+.+|+.+. .++|||+|||||+.+|++||||+|||+||+|+.|...
T Consensus 315 q~tAi~~~a~~a~~~gvpiIADGGIr~sGdi~KAla~GA~~VMlGsllAGt~EsPGe~~~~~~Gr~yK~YRGMGS~~Am~ 394 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVA 394 (479)
T ss_pred HHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEECCEEEEEECCCCCHHHHH
T ss_conf 09999999999875699789458725346799998728987888830157777996068806998978832667999996
Q ss_pred ----------------HCCCHHH-----------HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCC
Q ss_conf ----------------4146689-----------99999999999999999808985789614960005
Q gi|254781020|r 294 ----------------AMDSSDA-----------VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIR 335 (337)
Q Consensus 294 ----------------~~~G~~g-----------v~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~ 335 (337)
..+|.|+ |.+++.+|.+.||+.|+|+|++||.|||.+..|+|
T Consensus 395 ~~~~~~~~~~~~~~~~v~EGve~~~~~~vP~kG~v~~vi~ql~gGlrs~mgy~Ga~~i~el~~ka~fv~ 463 (479)
T PRK07807 395 ARTAGDSAFDRARKALFEEGISTSRMYLDPDRPGVEDLLDHITSGVRSSCTYAGAATLAEFHERAVVGV 463 (479)
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEE
T ss_conf 066664311121146445765022055588787589999999888886133768776999985787999
No 25
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=100.00 E-value=3.8e-35 Score=225.27 Aligned_cols=159 Identities=12% Similarity=0.094 Sum_probs=128.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC
Q ss_conf 85243079999999987399717850478668899999997699799945888865100123102344323244310634
Q gi|254781020|r 165 NTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP 244 (337)
Q Consensus 165 ~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~ 244 (337)
|.+.....+.++++++.++..+.+ ..||+.+++.++.++++|||+|.|+-..| ++|++|. ..+.|+|
T Consensus 264 hGhs~~v~~~ik~ik~~~~~~~~i-~aGNVaT~~~~~~L~~aGad~vkVGiGpG----SiCtTr~--------v~gvG~p 330 (497)
T PRK07107 264 DGYSEWQKRTLDYIKEKYGDTVKV-GAGNVVDRDGFLYLAEAGADFVKVGIGGG----SICITRE--------QKGIGRG 330 (497)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCC-CCCCHHCHHHHHHHHHCCCCEEEECCCCC----CCCEECC--------CCCCCCC
T ss_conf 535299999999999866987634-14521269999999980898689711599----6621130--------1256773
Q ss_pred HHHHHHHHHHHC--------CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-----------------------
Q ss_conf 688999998522--------8987997298888899999998388852334799998-----------------------
Q gi|254781020|r 245 TPLSLEMARPYC--------NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP----------------------- 293 (337)
Q Consensus 245 ~~~al~~~~~~~--------~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~----------------------- 293 (337)
|++|+.+|+.++ .++|||+|||||+.+|++||||+|||+||+|+.|-..
T Consensus 331 Q~sAv~~~a~~~~~~~~~~g~~vpiiADGGi~~sGDi~KAlaaGA~~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS 410 (497)
T PRK07107 331 QATALIDVAKARDEYFERTGVYIPICSDGGIVHDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGS 410 (497)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCEEEEEEECCCC
T ss_conf 48899999999888777416763287178756554599998538988998811057778997379789969898766675
Q ss_pred ------------------HCCCHH-------HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf ------------------414668-------9999999999999999998089857896149600056
Q gi|254781020|r 294 ------------------AMDSSD-------AVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 294 ------------------~~~G~~-------gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
..+|.+ .|.+++.+|...||+.|+|+|++||+|||.+..|+|.
T Consensus 411 ~~A~~~~ry~~~~~~~~~~~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~ka~f~~i 478 (497)
T PRK07107 411 NRARNWQRYDLGGDKKLSFEEGVDSYVPYAGKLKDNVAITLSKVRSTMCNCGALSIPELQQKAKITLV 478 (497)
T ss_pred HHHHCCCHHHCCCCCEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCEEEEE
T ss_conf 66651010102563200147975898657876899999998788772547677769999748999999
No 26
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00 E-value=2e-33 Score=215.12 Aligned_cols=305 Identities=23% Similarity=0.231 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC---CCHHHCCCEEEECCE-----EECCCEEEECHHHHHHHHCHHH
Q ss_conf 57899999853025589747568863032455789---981017462998989-----6256868501266334300025
Q gi|254781020|r 4 DRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPE---ISFDEVDPSVEFLGK-----KLSFPLLISSMTGGNNKMIERI 75 (337)
Q Consensus 4 ~~~~~~i~~a~~e~~~~~n~~~fd~~~l~p~~l~~---~~~~~vdlst~i~G~-----~l~~Pv~iapmsgg~~~~~~~~ 75 (337)
+|..+|..|........+..-.++|+.+.+..+.. ....+++.++.+.+. ++++||++|+||+|+.+ ...
T Consensus 17 ~r~~~~~~y~~~~~~~~~~f~s~~d~~~~~~~~~~~~~~~~~~~~~~v~ig~~~~~p~~~~~p~~is~MS~GalS--~~a 94 (392)
T cd02808 17 NRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALS--KEA 94 (392)
T ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCHHCCCCCCCCCCCCCCEEECCCCCCCCHHCCEEECCCCCCCCCC--HHH
T ss_conf 489999999985288887788877751157200258999777888726858887785421050322566776579--999
Q ss_pred HHHHHHHHHHHCCEEECCCCHHHHCCHHHHH---------HHHHHHHCCCHHHHHCCCCCCCC----------CCCCHHH
Q ss_conf 6999999998099066052022112866888---------99999866401232202752123----------6799899
Q gi|254781020|r 76 NRNLAIAAEKTKVAMAVGSQRVMFSDHNAIK---------SFELRQYAPHTVLISNLGAVQLN----------YDFGVQK 136 (337)
Q Consensus 76 ~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 136 (337)
-++|+++|+..|+..++|+.+....+..... .|.++...........+...|-. ...+. +
T Consensus 95 ~~ALa~ga~~~G~~~ntGEGg~~~~~~~~~~~~i~Qi~sg~fGv~~~~~~~v~~iEIK~gQGAKpG~GG~Lpg~KVt~-e 173 (392)
T cd02808 95 KEALAIGAALAGTASNTGEGGELPEEREGGGDIIKQVASGRFGVRPEYLNKADAIEIKIGQGAKPGEGGHLPGEKVTE-E 173 (392)
T ss_pred HHHHHHHHHHHCCEEECCCCCCCHHHHHHCCCEEEEECCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCH-H
T ss_conf 999999999738465158888899999735787998447756768899075136999833788899888076454579-9
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCC---HHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHH-HHCCCCEE
Q ss_conf 9987765089857625320356652068852---4307999999998739-97178504786688999999-97699799
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTN---FADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELG-LKSGIRYF 211 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a-~~aGad~i 211 (337)
+.+. .+++..++..++..+.. .+++.+.+++||+..+ .|+.+|.+... ...++..+ ..+++|.|
T Consensus 174 IA~~----------R~~~~G~d~iSP~~h~~i~s~edl~~~I~~LR~~~~~kpVgvKl~~g~-~~~~l~~~~~~~~~DfI 242 (392)
T cd02808 174 IAKI----------RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGH-GEGDIAAGVAAAGADFI 242 (392)
T ss_pred HHHH----------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC-CHHHHHHHHHHCCCCEE
T ss_conf 9988----------089999887799765666999999999999997289980799968889-88999999996479999
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH------HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 945888865100123102344323244310634688999998------52289879972988888999999983888523
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR------PYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~------~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
+|++++|+|++++.... ..+|+|...+|..+. .++++|.||++||++++.|++||||||||+|.
T Consensus 243 tIDG~eGGTGAaP~~~~----------d~~GlP~~~~l~~~~~~L~~~glr~~i~liasGgl~t~~di~kalaLGAD~v~ 312 (392)
T cd02808 243 TIDGAEGGTGAAPLTFI----------DHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVG 312 (392)
T ss_pred EEECCCCCCCCCHHHHH----------HCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHH
T ss_conf 96079987541429999----------74997389999999999997699676379963885747899999986756451
Q ss_pred HHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 347999984------------------------------14668999999999999999999808985789614960
Q gi|254781020|r 286 LASPFLKPA------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTA 332 (337)
Q Consensus 286 iGr~~l~~~------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~ 332 (337)
+||.++.++ ..+++.|.+++..+.+|++..|..+|.+++++|..+++
T Consensus 313 ~a~~~m~alGCiq~~~C~~~~CP~GiaTqd~~l~~~l~~~~~a~rv~ny~~~~~~el~~~~~a~G~~~~~~l~r~dl 389 (392)
T cd02808 313 IGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAALGKRSLELLGRSDL 389 (392)
T ss_pred HCHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHHHH
T ss_conf 05699998747997650599899611137988841468654699999999999999999999857999478898760
No 27
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-33 Score=212.59 Aligned_cols=271 Identities=18% Similarity=0.124 Sum_probs=189.9
Q ss_pred CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH---------HHHHHHHHHCCCHHHHHC
Q ss_conf 89625686850126633430002569999999980990660520221128668---------889999986640123220
Q gi|254781020|r 52 GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA---------IKSFELRQYAPHTVLISN 122 (337)
Q Consensus 52 G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 122 (337)
...+..||.+++||+|+.+. +..+++|.++++.|..+++|+++......+. ...|.+...+.......+
T Consensus 162 ~~~i~~~~~~~aMS~GAlS~--eA~~alA~a~~~~G~~sntGEGGe~~~~~~~~~s~I~QvaSGRFGV~~~yL~~a~~ie 239 (485)
T COG0069 162 VLELKKRFVTGAMSFGALSK--EAHEALARAMNRIGTKSNTGEGGEDPERYEDGRSAIKQVASGRFGVTPEYLANADAIE 239 (485)
T ss_pred CCEEEECCCCCCCCCCCCCH--HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCCCCHHHHCCCCEEE
T ss_conf 52044010025667764557--7889999999981671558788889788402455499961666764878827563699
Q ss_pred CCCCCC----------CCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CEEEEEC
Q ss_conf 275212----------36799899998776508985762532035665206885243079999999987399-7178504
Q gi|254781020|r 123 LGAVQL----------NYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV-PLLLKEV 191 (337)
Q Consensus 123 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-pii~k~v 191 (337)
+...|. ...++.+..+.+....+.+.+.+ ++ .......+++...|..|++..+. ++.+|.+
T Consensus 240 IKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP---~p-----HHDiysieDLaqlI~dLk~~~~~~~I~VKlv 311 (485)
T COG0069 240 IKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISP---PP-----HHDIYSIEDLAQLIKDLKEANPWAKISVKLV 311 (485)
T ss_pred EEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC---CC-----CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 986057778988989976579889976189988777589---97-----4665698899999999996188970699992
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 78668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 192 GCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
........+...++++||.|+|+|+.|+|++++...+...+.| +..+++..+..+.-..+++++.|++|||++||.
T Consensus 312 a~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP----~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~ 387 (485)
T COG0069 312 AEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIP----WELGLAETHQTLVLNGLRDKVKLIADGGLRTGA 387 (485)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCCH----HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 5655677876664046988997589986787856576368707----998899999999975986416999428706789
Q ss_pred HHHHHHHHCCCEEHHHHHHHHHH------------------------------CCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999983888523347999984------------------------------146689999999999999999998089
Q gi|254781020|r 272 DILKSIILGASLGGLASPFLKPA------------------------------MDSSDAVVAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 272 Dv~kAlalGAdaV~iGr~~l~~~------------------------------~~G~~gv~~~l~~l~~el~~~m~~~G~ 321 (337)
||+||++||||+|.+||+.|.+. .+.+++|.|++..+.+|++..|+.+|.
T Consensus 388 DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a~e~rella~lG~ 467 (485)
T COG0069 388 DVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEELRELLAALGK 467 (485)
T ss_pred HHHHHHHHCCCHHHHCHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999970864552021999985338664415899975034058888763374410899999999999999999998678
Q ss_pred CCHHHHHCCCCCCCC
Q ss_conf 857896149600056
Q gi|254781020|r 322 KRVQELYLNTALIRH 336 (337)
Q Consensus 322 ~~i~el~~~~~~i~~ 336 (337)
++|+||.++++++|.
T Consensus 468 ~~l~el~g~~d~L~~ 482 (485)
T COG0069 468 RSLSELIGRTDLLRT 482 (485)
T ss_pred CCHHHHHCCHHHHHC
T ss_conf 999997454676640
No 28
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=100.00 E-value=2.5e-31 Score=202.84 Aligned_cols=272 Identities=13% Similarity=0.089 Sum_probs=180.7
Q ss_pred CCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHH---------------------HHCC
Q ss_conf 746299898962568685012663343000256999999998099066-052022---------------------1128
Q gi|254781020|r 44 VDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRV---------------------MFSD 101 (337)
Q Consensus 44 vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~---------------------~~~~ 101 (337)
+||||+|+|.+|++||++|+-. .+.. ....+-+.+.|...+ +.|.+. .+.+
T Consensus 2 ~DLst~~~Gl~lkNP~~lASgp-~t~~------~~~i~~~~~aG~GaVV~KTl~~~~~~~~~pr~~~~~~~~~~~~G~~N 74 (413)
T PRK08318 2 ADLSITFCGIKSPNPFWLASAP-PTNK------YYNVARAFEAGWGGVVWKTLGPFIVNVSSPRFDALVKEDRRFIGFNN 74 (413)
T ss_pred CCCEEEECCEECCCCCEECCCC-CCCC------HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 8622888999818976789867-8899------99999998769539990507876778899982573577624236237
Q ss_pred ------HHHHHHH----HHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHH-HCCC---CC
Q ss_conf ------6688899----99986640123220275212367998999987765089857625320356652-0688---52
Q gi|254781020|r 102 ------HNAIKSF----ELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQ-PNGN---TN 167 (337)
Q Consensus 102 ------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 167 (337)
.....+. +++...++.++++++.... ....|..+.+..+..++|+++++++||+.... ..+. ..
T Consensus 75 ~elisd~~le~~L~~i~~~k~~~P~~~vIaSI~g~~--~~e~w~~la~~~e~~GaDalELNiSCPn~~~~~~~G~~~gq~ 152 (413)
T PRK08318 75 IELITDRPLEVNLREIRRVKRDYPDRALIASIMVEC--NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQV 152 (413)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC--CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCC
T ss_conf 421344589999999999886078970899994587--889999999986651887799955567766666555110579
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCC-CCCCHHHHCCC---CC-CCCHHHHHC
Q ss_conf 430799999999873997178504786688-9999999769979994588886-51001231023---44-323244310
Q gi|254781020|r 168 FADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGT-SWSRIESHRDL---ES-DIGIVFQDW 241 (337)
Q Consensus 168 ~~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~-~~~~~~~~r~~---~~-~~~~~~~~~ 241 (337)
.+.+.+.++|+|+.++.|+++|+.+|.++. +.++.+.++|||++++.|+-.. ...+++..+.. .+ ......++.
T Consensus 153 pe~v~~i~~~Vk~~~~iPV~vKLsPnvtdi~~iA~aa~~aGADgv~liNTi~~~~~iDid~~~~~p~i~~~~~~GGlSG~ 232 (413)
T PRK08318 153 PELVEMVTRWVKRGSRLPVIAKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGP 232 (413)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCCCH
T ss_conf 99999999998850688569982899752899999999769988999814786553202235530210677776766645
Q ss_pred CCCHHHHHHHHHHHC-----CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 634688999998522-----898799729888889999999838885233479999841466899999999999999999
Q gi|254781020|r 242 GIPTPLSLEMARPYC-----NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 242 gi~~~~al~~~~~~~-----~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m 316 (337)
.+.++ +|..+.++. .++||++.|||.+|.|++++|++||++|||+|++++ .|. ++++.+..||+.+|
T Consensus 233 aikPi-ALr~V~~i~~~~~~~~ipIiG~GGI~s~~Da~e~ilaGAsaVQv~Ta~~~---~G~----~ii~~i~~gL~~~m 304 (413)
T PRK08318 233 AVKPI-ALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ---YGF----RIVEDMISGLSHYM 304 (413)
T ss_pred HHHHH-HHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHH---CCC----HHHHHHHHHHHHHH
T ss_conf 67699-99999999863467883779756859899999999827892167510143---384----48999999999999
Q ss_pred HHCCCCCHHHHHCCCC
Q ss_conf 9808985789614960
Q gi|254781020|r 317 FLLGTKRVQELYLNTA 332 (337)
Q Consensus 317 ~~~G~~~i~el~~~~~ 332 (337)
..-|+++|+|++++..
T Consensus 305 ~~~G~~si~d~~G~a~ 320 (413)
T PRK08318 305 DEKGFASLEDMVGLAV 320 (413)
T ss_pred HHCCCCCHHHHHCCCC
T ss_conf 9809974888725265
No 29
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=100.00 E-value=5.3e-31 Score=200.89 Aligned_cols=266 Identities=17% Similarity=0.095 Sum_probs=175.4
Q ss_pred CCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCC---------H-----------------
Q ss_conf 746299898962568685012663343000256999999998099066-0520---------2-----------------
Q gi|254781020|r 44 VDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQ---------R----------------- 96 (337)
Q Consensus 44 vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~---------~----------------- 96 (337)
.||||+|+|.+|++||+.|+- +.... ....+.+.+.|...+ +.+. .
T Consensus 1 mDLst~~~Gl~lkNPii~aSg--~~~~~-----~~~~~~~~~~G~GavV~Ksi~~e~i~~~~~~~~~~~~~~~~~~~~~~ 73 (333)
T PRK07565 1 MDLSTTYLGLSLRNPLVASAS--PLTES-----LDNVKRLEDAGAGAVVLKSLFEEQIRHEAAELARHLTQGTESYAEAL 73 (333)
T ss_pred CCCCEEECCEECCCCCEECCC--CCCCC-----HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 966388899966998886660--57999-----99999999859619996877610145777777888888986753334
Q ss_pred -----HHHCCHHHHHHHHHHHH---CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCH
Q ss_conf -----21128668889999986---6401232202752123679989999877650898576253203566520688524
Q gi|254781020|r 97 -----VMFSDHNAIKSFELRQY---APHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNF 168 (337)
Q Consensus 97 -----~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (337)
....+.....+...... ..+.++++++... ....+.+..+..+..++|+++++++|++......+....
T Consensus 74 g~~n~~g~~n~g~e~~l~~i~~~k~~~~~pvIaSi~g~---s~ee~~~~a~~~e~~gadaiElNis~~~~~~~~~~~~~~ 150 (333)
T PRK07565 74 DYFPEPAYFRGGPEEYLELIRRAKEAVDIPVIASLNGS---SAGGWVDYARQIEEAGADALELNIYYLPTDPDISGAEVE 150 (333)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 53142345686899999999987750598459874779---989999999999764998899976677988654446507
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
Q ss_conf 30799999999873997178504786688-99999997699799945888865100123102344323244310634688
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL 247 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~ 247 (337)
....+.++++++.++.|+++|+.++.++. +.++.+.++|||++++.|+--+...+++..+...+.. ++++++.++
T Consensus 151 ~~~~~iv~~V~~~~~~Pv~vKLsPn~tdi~~iA~aa~~~Gadgv~~iNT~~~~~Id~e~~~~~~~~~---lSgp~~~~~- 226 (333)
T PRK07565 151 QRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLV---LSTPAELRL- 226 (333)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCC---CCCCCCCCH-
T ss_conf 8899999999864688568735998210999999999749988998436665633155443736866---677431207-
Q ss_pred HHHHHHHH--CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999852--2898799729888889999999838885233479999841466899999999999999999980898578
Q gi|254781020|r 248 SLEMARPY--CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQ 325 (337)
Q Consensus 248 al~~~~~~--~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~ 325 (337)
+|..+..+ ..++|||+.|||.+|.|++++|.+||++|||||++++ .|+ +++..+.+||+.+|..-|++||+
T Consensus 227 alr~v~~v~~~~~ipIiG~GGI~sg~DaiE~ilAGAsaVQv~Ta~~~---~G~----~v~~~i~~eL~~~m~~~G~~si~ 299 (333)
T PRK07565 227 PLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLR---HGP----DYIGTILAGLEDWMERHGYESLS 299 (333)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEHHHHH---HCC----HHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 88999999604698988888959899999999809886336223665---372----79999999999999983999899
Q ss_pred HHHCC
Q ss_conf 96149
Q gi|254781020|r 326 ELYLN 330 (337)
Q Consensus 326 el~~~ 330 (337)
|++++
T Consensus 300 e~~G~ 304 (333)
T PRK07565 300 QFRGS 304 (333)
T ss_pred HHCCC
T ss_conf 96172
No 30
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.98 E-value=2.5e-30 Score=196.95 Aligned_cols=265 Identities=19% Similarity=0.114 Sum_probs=174.8
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCH---------------------------
Q ss_conf 46299898962568685012663343000256999999998099066-05202---------------------------
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQR--------------------------- 96 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~--------------------------- 96 (337)
||+|+|+|.+|++||++|+- +.... ....+.+.+.|...+ +.|..
T Consensus 1 DLst~~~Gl~l~NPi~~ASg--~~~~~-----~e~~~~~~~~G~Gavv~KSi~~e~i~~~~~~~~~~~~~~~~~~~~~~~ 73 (325)
T cd04739 1 DLSTTYLGLSLKNPLVASAS--PLSRN-----LDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSY 73 (325)
T ss_pred CCCEEECCEECCCCCEECCC--CCCCC-----HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 98579899967998885652--56899-----999999998596799979567423456778889888899887112140
Q ss_pred --HH-HCCHHHHHHHH-HHHH--CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHH
Q ss_conf --21-12866888999-9986--640123220275212367998999987765089857625320356652068852430
Q gi|254781020|r 97 --VM-FSDHNAIKSFE-LRQY--APHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFAD 170 (337)
Q Consensus 97 --~~-~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (337)
.. ..++....+.. +.+. ..+.+++.++... ....+.+..+..+..++|+++++++|++......+......
T Consensus 74 ~n~~g~~n~g~e~~l~~i~~~~~~~~~pvI~Si~g~---s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~ 150 (325)
T cd04739 74 FPEYGRYNLGPEEYLELIRRAKRAVSIPVIASLNGV---SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQR 150 (325)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHH
T ss_conf 332145575899999999998753598759871689---98999999999976499879996566788855442106889
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 799999999873997178504786688-9999999769979994588886510012310234432324431063468899
Q gi|254781020|r 171 LSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 171 ~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
..+.++++++.++.|+++|+.++..+. +.++.+.++|||++++.|+--+...+++..+...+. ..++.++..+ +|
T Consensus 151 ~~~iv~~Vk~~~~~Pv~vKLsP~~~di~~ia~aa~~~GAdgi~liNT~~~~~id~~~~~~~~~~---~lSg~~~~~~-al 226 (325)
T cd04739 151 YLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNL---LLSSPAEIRL-PL 226 (325)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCC---CCCCCCCCHH-HH
T ss_conf 9999999986078866995399830099999999975998899735766564216764153687---7457530068-89
Q ss_pred HHHHHH--CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 999852--289879972988888999999983888523347999984146689999999999999999998089857896
Q gi|254781020|r 250 EMARPY--CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQEL 327 (337)
Q Consensus 250 ~~~~~~--~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el 327 (337)
..+..+ ..++|||+.|||.+|.|++++|.+||++|||||++++ .|+ .+++.+.+||+.+|..-|++||+|+
T Consensus 227 r~v~~~~~~~~ipIiG~GGI~s~~Da~e~ilAGAsaVQv~TA~~~---~G~----~i~~~i~~eL~~~m~~~G~~si~e~ 299 (325)
T cd04739 227 RWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR---HGP----DYIGTLLAGLEAWMEEHGYESVQQL 299 (325)
T ss_pred HHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHEEHHHHH---HCC----HHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 999999646898988888959899999999809887614323464---183----7999999999999998399979996
Q ss_pred HCC
Q ss_conf 149
Q gi|254781020|r 328 YLN 330 (337)
Q Consensus 328 ~~~ 330 (337)
+++
T Consensus 300 ~Gk 302 (325)
T cd04739 300 RGS 302 (325)
T ss_pred CCC
T ss_conf 273
No 31
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=99.98 E-value=1.3e-31 Score=204.58 Aligned_cols=264 Identities=14% Similarity=0.086 Sum_probs=187.1
Q ss_pred CEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHH-HCCEEECCCC----------------------HHHHCCH
Q ss_conf 6299898962568685012663343000256999999998-0990660520----------------------2211286
Q gi|254781020|r 46 PSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEK-TKVAMAVGSQ----------------------RVMFSDH 102 (337)
Q Consensus 46 lst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~-~g~~~~~g~~----------------------~~~~~~~ 102 (337)
|+|+++|.+|++|+++|+=..|.. .+.+-+.+.. +|- -++.+. ...+.+|
T Consensus 1 Lev~l~Gi~~kNP~~lASG~~G~~------~~~l~~~~~~gaGA-VvTKs~g~~pr~Gy~nPtiVE~~~G~lNAiGL~NP 73 (308)
T TIGR01037 1 LEVELFGIRFKNPVILASGVMGSG------VEALRRIDRSGAGA-VVTKSIGLEPRPGYRNPTIVEVPCGLLNAIGLQNP 73 (308)
T ss_pred CCEECCCCCCCCCCEEECCCCCCC------HHHHHHHHCCCCCE-EEECCEECCCCCCCCCCEEEECCCCEEEECCCCCH
T ss_conf 911106702106610221103662------88999875058863-78621331588854438079817855752358982
Q ss_pred HHHHHHH----HHHHCC--CHHHHHCCCCCCCCCCCCHHHHHHHHHHH----C-CCEEEECCCCHHHHHHHCCCCC---H
Q ss_conf 6888999----998664--01232202752123679989999877650----8-9857625320356652068852---4
Q gi|254781020|r 103 NAIKSFE----LRQYAP--HTVLISNLGAVQLNYDFGVQKAHQAVHVL----G-ADGLFLHLNPLQEIIQPNGNTN---F 168 (337)
Q Consensus 103 ~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~---~ 168 (337)
.+.+..+ ..++.+ +-.++++++.. +.|+.....+.. . .++++++++|||.-.- -|... .
T Consensus 74 G~e~fl~E~~~~~~e~~t~dvr~I~svyG~------~~EEfa~va~~~e~A~~y~~~~ELN~SCPhvK~G-~G~~iG~dP 146 (308)
T TIGR01037 74 GVEAFLEELKDVREEVPTHDVRLIASVYGE------SEEEFAEVAEKLEDADPYVDAYELNVSCPHVKGG-GGIEIGQDP 146 (308)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCC------CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCC-CCCCCCCCH
T ss_conf 179999863256643898752899983188------8225899999872113440000104777443423-465547787
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCC-CCCCCHHHHCCCCCCCCHHHHHCCCCHH
Q ss_conf 30799999999873997178504786688-999999976997999458888-6510012310234432324431063468
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGG-TSWSRIESHRDLESDIGIVFQDWGIPTP 246 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG-~~~~~~~~~r~~~~~~~~~~~~~gi~~~ 246 (337)
+-..+.++.+|+.++.|+++|+++|++|. +.++.+.++|+|+++++|+-. +...++-..|....+-..+.++++|-++
T Consensus 147 ~l~~~vv~avK~~~d~Pv~aKLsPNV~Di~eiA~a~eeaGaDGlt~INTl~PGMkIDI~~~kPiLaNk~GGlSGPAIKPi 226 (308)
T TIGR01037 147 ELSADVVKAVKDKVDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRPGMKIDIKAKKPILANKTGGLSGPAIKPI 226 (308)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCE
T ss_conf 79999999983000786578648656689999888753277616400120346777342078700004588507501422
Q ss_pred H--HHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8--999998-5228987997298888899999998388852334799998414668999999999999999999808985
Q gi|254781020|r 247 L--SLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 247 ~--al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
. ++.++. .+.++||||+.|||+|+.|++++|++||+||||||+..|.- . +.+..+.++|...|..-|++|
T Consensus 227 A~r~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g---~----~~f~~i~~~l~~fl~~~~~~s 299 (308)
T TIGR01037 227 AVRMVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRG---Y----KVFKKIIEGLIAFLKEEGFSS 299 (308)
T ss_pred EEEEHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCC---C----CCCHHHHHHHHHHHHHCCCCC
T ss_conf 121000047773782346863274558999999985220220002221177---5----244888767889998728964
Q ss_pred HHHHHCC
Q ss_conf 7896149
Q gi|254781020|r 324 VQELYLN 330 (337)
Q Consensus 324 i~el~~~ 330 (337)
|+|+-+.
T Consensus 300 i~e~iG~ 306 (308)
T TIGR01037 300 IEELIGL 306 (308)
T ss_pred HHHHHCC
T ss_conf 4774013
No 32
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=99.97 E-value=1.5e-31 Score=204.04 Aligned_cols=262 Identities=18% Similarity=0.156 Sum_probs=175.2
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHH----------HH
Q ss_conf 98101746299898962568685012663343000256999999998099066052022112866888----------99
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIK----------SF 108 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~----------~~ 108 (337)
++.++|+... ++..||.+++||+|+.+ ....+++|.++++.|+..++|+++.......... .|
T Consensus 52 i~i~eVEp~~-----~i~~~f~~~~MS~GalS--~~a~~ala~~a~~~G~~~nTGEGG~~p~~~~~~~~~~I~Qi~sgrF 124 (367)
T pfam01645 52 IPIEEVEPAL-----EIKTRFCTGAMSYGALS--EEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAADGAIKQVASGRF 124 (367)
T ss_pred CCHHHCCCHH-----HHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHCCEEECCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 7676559989-----97632033556565527--9999999999998376443588888989962368861785136767
Q ss_pred HHHHHCCCHHHHHCCCCCCC----------CCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCC---HHHHHHHH
Q ss_conf 99986640123220275212----------367998999987765089857625320356652068852---43079999
Q gi|254781020|r 109 ELRQYAPHTVLISNLGAVQL----------NYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTN---FADLSSKI 175 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i 175 (337)
.+............+...|. ...++ +++.+ ..++...++..++..+.. .+++.+.+
T Consensus 125 Gv~~~~l~~~~~iEIKi~QGAKPG~GG~Lpg~KVt-~eIA~----------~R~~~~G~d~iSP~~h~di~s~edL~~~I 193 (367)
T pfam01645 125 GVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVS-PEIAR----------IRGSPPGVGLISPPPHHDIYSIEDLAQLI 193 (367)
T ss_pred CCCHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCC-HHHHH----------HCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78976832565479998258788978837735448-99996----------80899998767863347889999999999
Q ss_pred HHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999873-997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 176 ALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 176 ~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
.++|+.. +.|+.+|++........+...+++|+|.|+|+++.|+|++.+.......+.| +..+++.++..+.-..
T Consensus 194 ~~Lr~~~~~~PVgvKl~~~~~~~~ia~~~aka~~D~I~IdG~eGGTGAaP~~~~d~~GlP----~~~~L~~~~~~L~~~g 269 (367)
T pfam01645 194 YDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLP----WELALAEVHQTLVENG 269 (367)
T ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCH----HHHHHHHHHHHHHHHC
T ss_conf 999841789945999814776899999875367888997178986775548899744246----9999999999998706
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH------------------------------CCCHHHHHHH
Q ss_conf 2289879972988888999999983888523347999984------------------------------1466899999
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA------------------------------MDSSDAVVAA 304 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~------------------------------~~G~~gv~~~ 304 (337)
++++|.||++||++++.|++||+|||||+|.+||.++.++ .+.++.|.++
T Consensus 270 lR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~AlGCi~~~~Ch~~~CP~GIaTqdp~l~~~l~~~~~~~rv~nf 349 (367)
T pfam01645 270 LRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNY 349 (367)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf 75764999769978889999999856535423479999864898665269989984225798887326966479999999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999980898
Q gi|254781020|r 305 IESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 305 l~~l~~el~~~m~~~G~~ 322 (337)
+..+.+|++..|..+|+.
T Consensus 350 ~~~~~~e~~~i~~a~G~~ 367 (367)
T pfam01645 350 FRFLAEEVRELLAALGFN 367 (367)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999985889
No 33
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=99.97 E-value=1e-29 Score=193.31 Aligned_cols=287 Identities=18% Similarity=0.141 Sum_probs=196.3
Q ss_pred EEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHC---------
Q ss_conf 03245578998101746299898962568685012663343000256999999998099066052022112---------
Q gi|254781020|r 30 HLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFS--------- 100 (337)
Q Consensus 30 ~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~--------- 100 (337)
.|.|.. ..++.++|+...+|.-+ |..++||+|+.+ ++..+.+|.|+++.|...+.|+++.-..
T Consensus 837 ~~~~~~-~pi~l~eVE~~~~I~kr-----F~tgaMS~GsiS--~eAHetlA~AmNriG~~SnsGEGGEd~~R~g~~~~S~ 908 (1483)
T PRK11750 837 ALKPAD-NPIPLDEVEPAEELFKR-----FDSAAMSIGALS--PEAHEALAIAMNRLGGRSNSGEGGEDPARYGTEKNSK 908 (1483)
T ss_pred CCCCCC-CCCCHHHCCCHHHHHHH-----CCCCCCCCCCCC--HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCC
T ss_conf 738899-99896882537777751-----254446666679--8999999999998488325888887887708988886
Q ss_pred -CHHHHHHHHHHHHCCCHHHHHCCCCCCCC----------CCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHH
Q ss_conf -86688899999866401232202752123----------6799899998776508985762532035665206885243
Q gi|254781020|r 101 -DHNAIKSFELRQYAPHTVLISNLGAVQLN----------YDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFA 169 (337)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (337)
...+...|.+...+.......++...|.. ..++ +.+.+.+.....-.+. .++|+ ......+
T Consensus 909 iKQVASGRFGVt~~YL~~A~eiqIKiAQGAKPGEGGqLPG~KV~-~~IA~~R~stPGV~LI--SPPPH-----HDIYSIE 980 (1483)
T PRK11750 909 IKQVASGRFGVTPHYLVNAEVLQIKVAQGAKPGEGGQLPGDKVN-PLIAKLRYSVPGVTLI--SPPPH-----HDIYSIE 980 (1483)
T ss_pred CEEEEECCCCCCHHHHCCHHHEEHHHHCCCCCCCCCCCCCCCCC-HHHHHHCCCCCCCCCC--CCCCC-----CCCCCHH
T ss_conf 33750012778988946965621223147899978889886457-9999870799997804--89996-----6521277
Q ss_pred HHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 079999999987399-7178504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 170 DLSSKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
++...|-.||...+. .|.||+|...-....+...++++||.|.||||-|+|++++-+.-...+. .|+.|+...+.
T Consensus 981 DLaQLI~DLK~~Np~ArVsVKLVs~~GVGTIAaGVAKA~AD~I~ISG~dGGTGAsp~tSikhaGl----PwElGlaEthq 1056 (1483)
T PRK11750 981 DLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGS----PWELGLAETHQ 1056 (1483)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCEEECCHHHCCCCEEEECCCCCCCCCCCHHHHCCCCC----CHHHHHHHHHH
T ss_conf 89999999863587754567740236743112011204788899816889877673234203888----65443899999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-----------------------------CCCHH
Q ss_conf 9999852289879972988888999999983888523347999984-----------------------------14668
Q gi|254781020|r 249 LEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA-----------------------------MDSSD 299 (337)
Q Consensus 249 l~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~-----------------------------~~G~~ 299 (337)
.+....++++|.+.+|||++||.||++|.+|||+-+++||..|.+. .+-+|
T Consensus 1057 ~L~~n~LR~rV~l~~DGglkTGrDVviaalLGAeefgfgT~~Lia~GCiM~R~CHlntCpvGIATQ~~~Lr~~~f~G~pe 1136 (1483)
T PRK11750 1057 ALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTAPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPE 1136 (1483)
T ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHH
T ss_conf 99973754638999669856168999998726055434427899844088786425889874015898888634289889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 9999999999999999998089857896149600056
Q gi|254781020|r 300 AVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 300 gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
.|.+++..+.+|+|..|+.+|+++++|+.++.++|+.
T Consensus 1137 ~vvn~f~~vAeevReilA~LG~rsl~e~iGr~dlL~~ 1173 (1483)
T PRK11750 1137 MVMNYFEFIAEETREWMAQLGVRSLEDLIGRTDLLEE 1173 (1483)
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC
T ss_conf 9999999999999999999684159998486340001
No 34
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.96 E-value=4.5e-27 Score=177.75 Aligned_cols=267 Identities=14% Similarity=0.055 Sum_probs=170.6
Q ss_pred CEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH----------------------HCCH
Q ss_conf 6299898962568685012663343000256999999998099066-0520221----------------------1286
Q gi|254781020|r 46 PSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM----------------------FSDH 102 (337)
Q Consensus 46 lst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~----------------------~~~~ 102 (337)
|+|+|+|.+|++||++|+-. ... . ..........|..++ ++|.... +.++
T Consensus 2 L~~~~~Gl~f~nPi~lAAG~-~~~----~--~~~~~~~~~~G~G~v~~kTit~~p~~Gnp~Pr~~~~~~~~iN~~G~~n~ 74 (301)
T PRK07259 2 LSVNLPGLKLKNPVMPASGT-FGF----G--GEYAKFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAVGLQNP 74 (301)
T ss_pred CEEEECCEECCCCCEECCCC-CCC----C--HHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
T ss_conf 62897998769974877668-999----9--9999999986975899172160402699998589666210034667883
Q ss_pred HHHHHHH-HHH--HCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHH-CCCEEEECCCCHHHHHH-HCCCCCHHHHHHHHHH
Q ss_conf 6888999-998--66401232202752123679989999877650-89857625320356652-0688524307999999
Q gi|254781020|r 103 NAIKSFE-LRQ--YAPHTVLISNLGAVQLNYDFGVQKAHQAVHVL-GADGLFLHLNPLQEIIQ-PNGNTNFADLSSKIAL 177 (337)
Q Consensus 103 ~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ 177 (337)
....+.+ +.. .....+++.++.... ..++....+..+.. ++|+++++++||+.... .....+.+.+.+.+++
T Consensus 75 G~~~~~~~~~~~~~~~~~pvi~si~~~~---~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~ 151 (301)
T PRK07259 75 GVDAFIEEELPWLEEFDTPIIANIAGST---PEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKA 151 (301)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHH
T ss_conf 5999999999764206998799737677---6899999998645568888999654788885266608799999999999
Q ss_pred HHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99873997178504786688-99999997699799945888865100123102344323244310634688999998522
Q gi|254781020|r 178 LSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC 256 (337)
Q Consensus 178 l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~ 256 (337)
+++.++.|+++|+.++.++. +.++.+.++|+|++++.|+--....+++..+...+......++..+.+. ++..++.+.
T Consensus 152 v~~~~~~Pv~vKlsP~~~~i~~ia~~~~~~gadgvv~~Nt~~~~~id~~~~~p~~~~~~GGlSG~~l~~~-al~~v~~~~ 230 (301)
T PRK07259 152 VKSVSKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPI-ALRMVYQVA 230 (301)
T ss_pred HHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHH
T ss_conf 9873489779980787121999999999759988999567767653235677433578886347335189-999999998
Q ss_pred --CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf --898799729888889999999838885233479999841466899999999999999999980898578961496
Q gi|254781020|r 257 --NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNT 331 (337)
Q Consensus 257 --~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~ 331 (337)
.++|||+.|||.++.|+++.|.+||++||++|. +| .|+ .++..+.+||..+|..-|++||+|+++..
T Consensus 231 ~~~~ipIig~GGI~s~~da~e~i~aGAs~VQv~Ta-v~---~Gp----~~~~~i~~~L~~~l~~~G~~si~e~~G~a 299 (301)
T PRK07259 231 KAVDIPIIGMGGISTAEDAIEFMMAGASAVQVGTA-NF---IDP----YAFPEIIEGLEAYLDEEGIKSIEEIIGIA 299 (301)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HH---CCC----HHHHHHHHHHHHHHHHCCCCCHHHHHCHH
T ss_conf 51698889767979999999999839879872123-31---490----69999999999999984999899971813
No 35
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=5e-27 Score=177.50 Aligned_cols=265 Identities=18% Similarity=0.148 Sum_probs=171.8
Q ss_pred EEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHHH----------------------HCCHH
Q ss_conf 29989896256868501266334300025699999999809906-60520221----------------------12866
Q gi|254781020|r 47 SVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRVM----------------------FSDHN 103 (337)
Q Consensus 47 st~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~~----------------------~~~~~ 103 (337)
||+|+|.+|++||++|+ | .... ...+.......|..+ ++++.... +.++.
T Consensus 1 sv~~~Gl~~~nPi~lAA--G-~~~~----~~~~~~~~~~~g~G~v~~~Tvt~~p~~Gn~~PR~~~~~~~~iN~~G~~n~G 73 (296)
T cd04740 1 SVELAGLRLKNPVILAS--G-TFGF----GEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPG 73 (296)
T ss_pred CEEECCEECCCCCEECC--C-CCCC----CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCHHHHHHCCCCCCC
T ss_conf 96889885799878786--7-8998----399999988589638993804703145899981781541167652378886
Q ss_pred HHHHHH-HHH--HCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHH-HCCCCCHHHHHHHHHHHH
Q ss_conf 888999-998--6640123220275212367998999987765089857625320356652-068852430799999999
Q gi|254781020|r 104 AIKSFE-LRQ--YAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQ-PNGNTNFADLSSKIALLS 179 (337)
Q Consensus 104 ~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~ 179 (337)
...+.+ +.. .....++..++... ...++....+..+..++|+++++++||+.... .....+.+.+.+.+++++
T Consensus 74 ~~~~~~~l~~~~~~~~~pvi~si~~~---~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk 150 (296)
T cd04740 74 VEAFLEELLPWLREFGTPVIASIAGS---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVK 150 (296)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHH
T ss_conf 48999878986356897189981689---878999999998864898899978899867636775749999999999998
Q ss_pred HHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC--
Q ss_conf 873997178504786688-99999997699799945888865100123102344323244310634688999998522--
Q gi|254781020|r 180 SAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC-- 256 (337)
Q Consensus 180 ~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~-- 256 (337)
+.++.|+++|+.++..+. +.++.+.++|+|++++.|+-.....+++..+..........++..+.+. +|..++.+.
T Consensus 151 ~~~~~Pi~vKlsP~~~~i~~ia~~~~~~g~dgiv~~NT~~~~~id~~~~~p~l~~~~GGlSG~~l~~~-al~~v~~~~~~ 229 (296)
T cd04740 151 KATDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPI-ALRMVYQVYKA 229 (296)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHHHH
T ss_conf 60489669971898000999999999769988999746787663644467552455787686778899-99999999854
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 89879972988888999999983888523347999984146689999999999999999998089857896149
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
.++|||+.|||.++.|+++.|.+||++||++|+ +| .|+. ++..+.+||+.+|..-|++||+|+++.
T Consensus 230 ~~ipIig~GGI~s~~da~e~i~aGAs~VQi~Ta-i~---~Gp~----~i~~i~~~L~~~l~~~G~~si~e~~G~ 295 (296)
T cd04740 230 VEIPIIGVGGIASGEDALEFLMAGASAVQVGTA-NF---VDPE----AFKEIIEGLEAYLDEEGIKSIEELVGL 295 (296)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHH-HH---CCHH----HHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 588879757979999999999839988872366-74---2927----999999999999998399989995035
No 36
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.9e-26 Score=174.04 Aligned_cols=273 Identities=15% Similarity=0.105 Sum_probs=175.3
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHH-----------------------HHCC
Q ss_conf 46299898962568685012663343000256999999998099066052022-----------------------1128
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRV-----------------------MFSD 101 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~-----------------------~~~~ 101 (337)
+++|+++|.+|++||+.|+ |..- ...+...+.....+| ...+++... +-..
T Consensus 1 ~l~~~~~Gl~f~NPl~lAa---G~~~--~~~~~~~~~~~~g~G-~i~~ktvt~~pq~Gnp~PR~~~l~~~~~~iN~mG~~ 74 (310)
T COG0167 1 DLSTEILGLKFPNPLGLAA---GFDG--KNGEELDALAALGFG-AIVTKTVTPEPQEGNPKPRLFRLPEDEGLINRMGFN 74 (310)
T ss_pred CCCEEECCEECCCCCEECC---CCCC--CCHHHHHHHHHCCCC-EEEECCCCCCCCCCCCCCEEEEECCCCCHHHHCCCC
T ss_conf 9740356466499776745---5786--577899999855785-699667777777899998178715753088754898
Q ss_pred HHHHHHHHH--HHHCCCH-HHHHCCCCCCCC-CCCCHHHHHHHHHHHC-CCEEEECCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 668889999--9866401-232202752123-6799899998776508-9857625320356652068852430799999
Q gi|254781020|r 102 HNAIKSFEL--RQYAPHT-VLISNLGAVQLN-YDFGVQKAHQAVHVLG-ADGLFLHLNPLQEIIQPNGNTNFADLSSKIA 176 (337)
Q Consensus 102 ~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 176 (337)
+...+.+.. ....... +...+++..... ....+.+..+..+... +++++++++||+..--..-....+.+.+.++
T Consensus 75 N~G~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~ 154 (310)
T COG0167 75 NPGADAFLEELKLAKYEGKPIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLE 154 (310)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf 65289999998864001477676348875788578899999999750778879998538999774665439999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCC-CCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-
Q ss_conf 999873997178504786688-999999976997999458888-65100123102344323244310634688999998-
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGG-TSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR- 253 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG-~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~- 253 (337)
++++.++.|+++|+.++..+. +.++.+.++|+|++++.|+-. ....+.+..+..........++..+.+. ++..++
T Consensus 155 ~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~i~~~~~~~~~~~~~GGLSG~~ikp~-al~~v~~ 233 (310)
T COG0167 155 AVKAATKVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI-ALRVVAE 233 (310)
T ss_pred HHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHH
T ss_conf 998635686599938888999999999997498589997003665530123455566767777575100278-9999999
Q ss_pred ---HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf ---52289879972988888999999983888523347999984146689999999999999999998089857896149
Q gi|254781020|r 254 ---PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 254 ---~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
.+..++|||+.|||.|+.|+++.|++||++||+||+++| .|+ .++..+.++|..+|..-|+.||+|+++.
T Consensus 234 l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~---~Gp----~i~~~I~~~l~~~l~~~g~~si~d~~G~ 306 (310)
T COG0167 234 LYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIY---KGP----GIVKEIIKGLARWLEEKGFESIQDIIGS 306 (310)
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEE---ECC----HHHHHHHHHHHHHHHHCCCCCHHHHHCH
T ss_conf 998428997489846869699999999829756404112102---085----0999999999999998199879998453
Q ss_pred C
Q ss_conf 6
Q gi|254781020|r 331 T 331 (337)
Q Consensus 331 ~ 331 (337)
.
T Consensus 307 ~ 307 (310)
T COG0167 307 A 307 (310)
T ss_pred H
T ss_conf 3
No 37
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.93 E-value=1.8e-24 Score=162.42 Aligned_cols=271 Identities=14% Similarity=0.062 Sum_probs=160.8
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHH---------------------HHCCH
Q ss_conf 46299898962568685012663343000256999999998099066-052022---------------------11286
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRV---------------------MFSDH 102 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~---------------------~~~~~ 102 (337)
+|||+|+|.+|++||++|+-.. . .. ....+.....|..++ +++... +-+..
T Consensus 1 ~~st~~~Gl~f~NPi~lAaG~~-~----~~--~e~~~~~~~~G~G~v~~kTit~~pq~GNp~PR~~r~~~~~iN~~G~~n 73 (308)
T PRK02506 1 STATQIAGFSFDNCLMNAAGVY-C----MT--KEELEEVEASQAGSFVTKTATLEVRPGNPEPRYADTPLGSINSMGLPN 73 (308)
T ss_pred CCCEEECCEECCCCCEECCCCC-C----CC--HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEECCCCHHHCCCCCC
T ss_conf 9887989995599888786789-9----89--999999997697389954235457669999869976753012154785
Q ss_pred HHHH-HHH----HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCC-CEEEECCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 6888-999----9986640123220275212367998999987765089-857625320356652068852430799999
Q gi|254781020|r 103 NAIK-SFE----LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGA-DGLFLHLNPLQEIIQPNGNTNFADLSSKIA 176 (337)
Q Consensus 103 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 176 (337)
...+ +.+ .....+...++.++... ..+. +....+..+..++ +.++++++||+..-...-..+.+.+.+.++
T Consensus 74 ~G~~~~~~~l~~~~~~~~~~~vi~si~g~--~~~e-~~~~~~~~~~~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~ 150 (308)
T PRK02506 74 NGFDYYLDYVLDLQKTGPHKPHFLSVVGL--SPEE-THTILKKIQASDFEGLVELNLSCPNVPGKPQIAYDFETTDQILT 150 (308)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEC--CHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHH
T ss_conf 63899999889999627999758888507--7537-78889998754754255463337885105555228999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHH---HHHCCCCEEEECCCCC-CCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 99987399717850478668899999---9976997999458888-6510012310234432324431063468899999
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMDIEL---GLKSGIRYFDIAGRGG-TSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~~~~---a~~aGad~i~v~~~gG-~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
++++.+..|+++|+.++....+.... +.+.+.++|...|.-+ +...+.+.............++..+.+. ++..+
T Consensus 151 ~v~~~~~~Pi~vKlsP~~~~~~~~~~a~~~~~~~~~~i~~~nt~~~~~~i~~~~~~~~~~~~~GGlSG~~l~~~-al~~v 229 (308)
T PRK02506 151 EVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKYPLAFVNCVNSIGNGLVIEDESVVIKPKNGFGGIGGDYIKPT-ALANV 229 (308)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH-HHHHH
T ss_conf 99987503334558987776769999998561565379887023566201377510156788788776113379-99999
Q ss_pred H----HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 8----522898799729888889999999838885233479999841466899999999999999999980898578961
Q gi|254781020|r 253 R----PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 253 ~----~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
+ .+..++|||+.|||.++.|+++.|.+||++||++|+++| .|+. ++..+..||+.+|..-|++||+|++
T Consensus 230 ~~~~~~~~~~i~IIg~GGI~s~~Da~e~i~aGAs~VQv~Tal~~---~Gp~----~~~~I~~~L~~~l~~~G~~si~d~~ 302 (308)
T PRK02506 230 HAFYQRLKPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK---EGPA----IFERITKELKAIMVEKGYQSLEDFR 302 (308)
T ss_pred HHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEEEEEEE---ECCH----HHHHHHHHHHHHHHHCCCCCHHHHC
T ss_conf 99999838996389866707899999999819872068422204---5947----9999999999999984999889965
Q ss_pred CCCCC
Q ss_conf 49600
Q gi|254781020|r 329 LNTAL 333 (337)
Q Consensus 329 ~~~~~ 333 (337)
++--+
T Consensus 303 G~~~~ 307 (308)
T PRK02506 303 GKLKY 307 (308)
T ss_pred CEEEC
T ss_conf 44201
No 38
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.92 E-value=6e-23 Score=153.49 Aligned_cols=248 Identities=14% Similarity=0.085 Sum_probs=147.1
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH-----------------------HC
Q ss_conf 46299898962568685012663343000256999999998099066-0520221-----------------------12
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM-----------------------FS 100 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~-----------------------~~ 100 (337)
||+|+|+|.+|++||++|+-. ... +......+.+.|..++ +++.+.. +.
T Consensus 1 dL~t~~~Gl~~~nPi~lAAG~-~~~------~~~~~~~~~~~G~G~vv~ktit~~~~~~gn~~PR~~r~~~~~~~~~g~~ 73 (299)
T cd02940 1 DLSVTFCGIKFPNPFGLASAP-PTT------SYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVSPRIARLRTSGRGQIGFN 73 (299)
T ss_pred CCCEEECCEECCCCCEECCCC-CCC------CHHHHHHHHHCCCCEEECCEECCCCCCCCCCCCCEEECCCCHHHHCCCC
T ss_conf 998788999889986878778-998------9999999998798889915689887888999987898876625521337
Q ss_pred C------HHHHHHHH----HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHH-HCCC---C
Q ss_conf 8------66888999----9986640123220275212367998999987765089857625320356652-0688---5
Q gi|254781020|r 101 D------HNAIKSFE----LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQ-PNGN---T 166 (337)
Q Consensus 101 ~------~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~ 166 (337)
+ .....+.. ++...+..+.+.++... ....++....+..+..++|+++++++||+.... ..+. .
T Consensus 74 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~si~~~--~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~ 151 (299)
T cd02940 74 NIELISEKPLEYWLKEIRELKKDFPDKILIASIMCE--YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ 151 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCC
T ss_conf 840121202999999999987527997379885178--987899999999987188889982678898761234555244
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCC-CCCCHHHHCCCCC----CCCHHHHH
Q ss_conf 2430799999999873997178504786688-9999999769979994588886-5100123102344----32324431
Q gi|254781020|r 167 NFADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGT-SWSRIESHRDLES----DIGIVFQD 240 (337)
Q Consensus 167 ~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~-~~~~~~~~r~~~~----~~~~~~~~ 240 (337)
....+.+.++++++.++.|+++|+.++..+. +.++.+.++|+|++++.|+-.. ...+++..+.... ......++
T Consensus 152 ~~~~l~~i~~~v~~~~~~Pi~vKLsP~~~~i~~ia~~~~~~gadgiv~~Nt~~~~~~i~~d~~~~~~~~~~~~~~GGlSG 231 (299)
T cd02940 152 DPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSG 231 (299)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999986247864896288715499999999985998999976667756544223566656456777784558
Q ss_pred CCCCHH--HHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHH
Q ss_conf 063468--8999998-522898799729888889999999838885233479999841466899999
Q gi|254781020|r 241 WGIPTP--LSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAA 304 (337)
Q Consensus 241 ~gi~~~--~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~ 304 (337)
..+.+. ..+..++ ....++|||+.|||.++.|+++.|.+||++||++|.++| .|++-+.+.
T Consensus 232 ~~l~~~al~~v~~i~~~~~~~i~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~---~Gp~~i~~I 295 (299)
T cd02940 232 PAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN---QGFTIVDDM 295 (299)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCHHHHHHH
T ss_conf 7889999999999999648997789989959999999999849989999899998---098999999
No 39
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=99.91 E-value=2.7e-22 Score=149.61 Aligned_cols=252 Identities=15% Similarity=0.059 Sum_probs=143.8
Q ss_pred CEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHHH----------------------HCCH
Q ss_conf 629989896256868501266334300025699999999809906-60520221----------------------1286
Q gi|254781020|r 46 PSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRVM----------------------FSDH 102 (337)
Q Consensus 46 lst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~~----------------------~~~~ 102 (337)
|+|+|+|.+|++||++|+- ... .. ..+.+.+...|..+ ++++.+.. ..++
T Consensus 2 L~t~~~Gl~~~nPi~lAsG---~~~---~~-~~~~~~~~~~g~G~vv~ktit~~~~~gnp~Pr~~~~~~~~~n~~G~~n~ 74 (290)
T pfam01180 2 LAVKIPGLKFKNPIGLASG---FDK---FG-EEALKWLALGKFGAIEIKSVTPEPQPGNPTPRVFRLPEGVLNAMGLNNP 74 (290)
T ss_pred EEEEECCEECCCCCEECCC---CCC---CC-HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCHHHHHCCCCCC
T ss_conf 5699899887998788867---688---86-9999998718967799483485626699987799837014421565773
Q ss_pred HHHHHHH-HHH---HCC-CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 6888999-998---664-01232202752123679989999877650898576253203566520688524307999999
Q gi|254781020|r 103 NAIKSFE-LRQ---YAP-HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIAL 177 (337)
Q Consensus 103 ~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (337)
....+.+ +.. ..+ ...+..++.. .. ..++....+..+. .+|+++++++||+..................++
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~vi~si~g--~~-~~d~~~~~~~~~~-~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~ 150 (290)
T pfam01180 75 GLDAVLEELLKRRKEYPRPLGIILSKAG--ST-VEDYVEVARKIGP-FADYLELNVSCPNTPGLRALQTDPELAAILLKV 150 (290)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCC--CC-HHHHHHHHHHHHH-HCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 0799999999877753888537862466--99-9999999999974-358899998536887613340429899999999
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHH-HHCCCCEEE---ECCCC-CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-
Q ss_conf 99873997178504786688999999-976997999---45888-8651001231023443232443106346889999-
Q gi|254781020|r 178 LSSAMDVPLLLKEVGCGLSSMDIELG-LKSGIRYFD---IAGRG-GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM- 251 (337)
Q Consensus 178 l~~~~~~pii~k~v~~~~~~~~~~~a-~~aGad~i~---v~~~g-G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~- 251 (337)
+++.++.|+++|+.++..+......+ ..+|+|++. ..|.- -....+++..+..........++..+.+. +|..
T Consensus 151 v~~~~~~Pv~vKlsp~~~~~~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~-al~~v 229 (290)
T pfam01180 151 VKEVSKVPVLVKLAPDLTDIVIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPI-ALKVI 229 (290)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHH
T ss_conf 87504787389838987746899999997183776899965873465555555666312567888576067899-99999
Q ss_pred --HH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf --98-522898799729888889999999838885233479999841466899999999999999999
Q gi|254781020|r 252 --AR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 252 --~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m 316 (337)
++ ....++|||+.|||.++.|+++.|.+||++||++|.+++ .|+. .+..+.+||+.+|
T Consensus 230 ~~~~~~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~---~Gp~----~i~~i~~~L~~~m 290 (290)
T pfam01180 230 RELYQRVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIF---GGPF----IFPKIIDELPELL 290 (290)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCCH----HHHHHHHHHHHHC
T ss_conf 99999708997499988949999999999839979998589984---1917----9999999999759
No 40
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.91 E-value=2.1e-22 Score=150.24 Aligned_cols=241 Identities=16% Similarity=0.113 Sum_probs=150.4
Q ss_pred EEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH----------------------------
Q ss_conf 99898962568685012663343000256999999998099066-0520221----------------------------
Q gi|254781020|r 48 VEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM---------------------------- 98 (337)
Q Consensus 48 t~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~---------------------------- 98 (337)
++|+|.+|++||++|+- ... . +....+.+.+.|..+. +++....
T Consensus 1 V~~~Gl~l~nPi~~aAG--~~~---~--~~~~~~~~~~~G~G~vv~ktit~~~~~gn~~Pr~~~~~~~~~~~~~~~~~~N 73 (289)
T cd02810 1 VNFLGLKLKNPFGVAAG--PLL---K--TGELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILN 73 (289)
T ss_pred CEECCEECCCCCEECCC--CCC---C--CHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEC
T ss_conf 96699828998888977--888---9--9899999997698789927357220158987518870366656755103621
Q ss_pred ---HCCHHHHHHHHHH----HHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHH
Q ss_conf ---1286688899999----866401232202752123679989999877650898576253203566520688524307
Q gi|254781020|r 99 ---FSDHNAIKSFELR----QYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADL 171 (337)
Q Consensus 99 ---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (337)
..+.....+.+.. ...++.+++.++.... ...+....+..+..++|+++++++||+.............+
T Consensus 74 ~~g~~n~g~~~~~~~l~~~~~~~~~~pli~Si~~~~---~~~~~~~a~~~~~~gad~lElNiScPn~~~~~~~~~~~~~~ 150 (289)
T cd02810 74 SFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSS---KEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAV 150 (289)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCC---HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHH
T ss_conf 554678788999999999986179953999788898---78999999999984798489984036756553201499999
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCC---HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 9999999987399717850478668---8999999976997999458888651001231023443232443106346889
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLS---SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~---~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
.+.++++++.++.|+++|+.++... .+.++.+.++|+|++++.|.-.....+...............++..+.+. +
T Consensus 151 ~~i~~~v~~~~~~Pv~vKLsp~~~~~~~~~ia~~~~~~ga~gv~~~Nt~~~~~~~~~~~~~~~~~~~gGlSG~~i~~~-a 229 (289)
T cd02810 151 ANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPL-A 229 (289)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-H
T ss_conf 999999986026874884278876168999999999759968999678776555444455445677652366277889-9
Q ss_pred HHH---HHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHH
Q ss_conf 999---9852-28987997298888899999998388852334799998414668999
Q gi|254781020|r 249 LEM---ARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVV 302 (337)
Q Consensus 249 l~~---~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~ 302 (337)
|.. +++. ..++|||+.|||.++.|++++|.+|||+||++|.+++ .|+.-+.
T Consensus 230 l~~v~~~~~~~~~~i~Iig~GGI~~~~da~e~i~aGA~~Vqv~Tal~~---~Gp~ii~ 284 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW---DGPDVIR 284 (289)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---HCHHHHH
T ss_conf 999999999749996099989939999999999849979999899997---5869999
No 41
>KOG2550 consensus
Probab=99.90 E-value=3.5e-23 Score=154.83 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 07999999998739971785047866889999999769979994588886510012310234432324431063468899
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
...++++|+++.++..-++ .||+.+.+.++.++.+|||++.|+-.-| ++|.++ ....+|.||.+|+
T Consensus 278 ~qiemik~iK~~yP~l~Vi--aGNVVT~~qa~nLI~aGaDgLrVGMGsG----SiCiTq--------evma~GrpQ~TAV 343 (503)
T KOG2550 278 YQLEMIKYIKETYPDLQII--AGNVVTKEQAANLIAAGADGLRVGMGSG----SICITQ--------KVMACGRPQGTAV 343 (503)
T ss_pred HHHHHHHHHHHHCCCCEEE--CCCEEEHHHHHHHHHCCCCEEEECCCCC----CEEEEC--------EEEECCCCCCCCH
T ss_conf 5799999998668886343--1655338889999873676057525567----505453--------0123267762003
Q ss_pred HHHHHH--CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH-------------------------HC-------
Q ss_conf 999852--28987997298888899999998388852334799998-------------------------41-------
Q gi|254781020|r 250 EMARPY--CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP-------------------------AM------- 295 (337)
Q Consensus 250 ~~~~~~--~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~-------------------------~~------- 295 (337)
.++... ...+|||+||||++.+|++|||+|||++||+|.-+..- ++
T Consensus 344 y~va~~A~q~gvpviADGGi~~~Ghi~KAl~lGAstVMmG~lLAgtTEapGeyf~~~g~r~KkyrGMGSl~AM~~~s~~r 423 (503)
T KOG2550 344 YKVAEFANQFGVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAGTTEAPGEYFFRDGVRLKKYRGMGSLDAMESSSQKR 423 (503)
T ss_pred HHHHHHHHHCCCCEECCCCCCCCHHHHHHHHCCCHHHHCCCHHCCCCCCCCCEEEECCEEEEEECCCCHHHHHHHHHHHC
T ss_conf 26999997649965506875873177888753850631041101023588614742473432011765588775120110
Q ss_pred -----------CCH-------HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
Q ss_conf -----------466-------899999999999999999980898578961496000
Q gi|254781020|r 296 -----------DSS-------DAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALI 334 (337)
Q Consensus 296 -----------~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i 334 (337)
.|. -.|.+++-.+...++..++.+|++++++|+......
T Consensus 424 Y~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqdiGa~sL~~l~~~~~~~ 480 (503)
T KOG2550 424 YFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQDIGARSLKELREMMYSG 480 (503)
T ss_pred CCCCCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 036654476415827986347525553789998887653365077799999875456
No 42
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase; InterPro: IPR005994 Guanosine monophosphate reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides. A deep split separates two families of GMP reductase. This family is found in a variety of bacterial lineages. .
Probab=99.87 E-value=7.9e-21 Score=141.00 Aligned_cols=271 Identities=17% Similarity=0.168 Sum_probs=190.4
Q ss_pred HHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH
Q ss_conf 68863032455789981017462998989625686850126633430002569999999980990660520221128668
Q gi|254781020|r 25 FFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA 104 (337)
Q Consensus 25 ~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~ 104 (337)
.|+|++|+|+-.--.++++.||+++++..+|++|++.|.|.. .+++.+|...++.+..++.. ..+++.
T Consensus 3 dyediqliP~kCi~~srs~~dt~~~lG~~~fklPv~Panmqt-------~~~e~~a~~la~~~yfy~mh-----rf~~~~ 70 (321)
T TIGR01306 3 DYEDIQLIPNKCIVESRSECDTSVRLGKKKFKLPVVPANMQT-------IIDEKLAKSLAENGYFYIMH-----RFDEEA 70 (321)
T ss_pred CCHHHEECCCCEEEECCCCCCCEEEECCEEEECCCCCHHHHH-------HHHHHHHHHHHHCCCEEEEE-----ECCCHH
T ss_conf 500110123410240022444046665612101112236788-------88899999985169579998-----147011
Q ss_pred HHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHH-CCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 8899999866401232202752123679989999877650-898576253203566520688524307999999998739
Q gi|254781020|r 105 IKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVL-GADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMD 183 (337)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 183 (337)
+..|- +.... .-++..+.......+ .+-+.+..+.. .... +++ ...+.+...+.+.++.++...+
T Consensus 71 r~~fi-k~m~~-~Gl~~sisvGvk~~e--y~f~~~l~~~~l~Pe~--~ti--------diahGh~~~vi~mi~h~k~~~P 136 (321)
T TIGR01306 71 RIPFI-KDMQE-RGLFASISVGVKKAE--YEFVEKLAEEKLIPEY--ITI--------DIAHGHSNSVIEMIKHIKTHLP 136 (321)
T ss_pred HHHHH-HHHHH-CCCEEEEEECCHHHH--HHHHHHHHHCCCCCCE--EEE--------EEECCCHHHHHHHHHHHHHHCC
T ss_conf 26899-98874-785466520200356--8999998742678615--788--------7403633789999999987488
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEE
Q ss_conf 97178504786688999999976997999458888651001231023443232443106346889999985228987997
Q gi|254781020|r 184 VPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIA 263 (337)
Q Consensus 184 ~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~Iia 263 (337)
..+++ .||+.+|+..+.+..+|+|+-.|+-..|..+.+- .....++. + -++.+|.-|..+..+ |||+
T Consensus 137 ~~fvi--aGnvGtPe~vrelenaGadatkvGiGPG~vCitk-----~ktGfGtG--G---Wqlaal~~C~kaa~k-P~ia 203 (321)
T TIGR01306 137 DSFVI--AGNVGTPEAVRELENAGADATKVGIGPGKVCITK-----IKTGFGTG--G---WQLAALRWCAKAARK-PIIA 203 (321)
T ss_pred CCEEE--ECCCCCCHHHHHHHHCCCCCEEECCCCCCEEEEE-----EECCCCCC--H---HHHHHHHHHHHHHCC-CEEE
T ss_conf 41687--5467882556766533764113224787368986-----40255761--5---899999998886368-7031
Q ss_pred CCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-------------------------------CCCH-------HHHHHHH
Q ss_conf 2988888999999983888523347999984-------------------------------1466-------8999999
Q gi|254781020|r 264 SGGLRNGVDILKSIILGASLGGLASPFLKPA-------------------------------MDSS-------DAVVAAI 305 (337)
Q Consensus 264 dGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~-------------------------------~~G~-------~gv~~~l 305 (337)
|||||+-+|++|.+..||..||+|+-|..-. ++|. -.+.+.+
T Consensus 204 dGGirthGdiaksirfGa~mvmiGslfa~h~esPG~t~e~dG~~~key~Gsase~~kGe~knveGkk~~~~~kG~~~dtl 283 (321)
T TIGR01306 204 DGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGKTVEVDGKLYKEYFGSASEFQKGEHKNVEGKKMLVEHKGSLKDTL 283 (321)
T ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCEEEEEECCCCHHHHH
T ss_conf 58523300344555531043123345420246875121320256675505400024665334464068860367368899
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCCCCC
Q ss_conf 99999999999980898578961496000
Q gi|254781020|r 306 ESLRKEFIVSMFLLGTKRVQELYLNTALI 334 (337)
Q Consensus 306 ~~l~~el~~~m~~~G~~~i~el~~~~~~i 334 (337)
..+..+|++..+|.|-++++.||...++|
T Consensus 284 ~em~qdlqssisyaGG~~l~~~r~vdyvi 312 (321)
T TIGR01306 284 KEMQQDLQSSISYAGGKDLDSLRTVDYVI 312 (321)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCCCEEE
T ss_conf 99987765442111540134441003578
No 43
>KOG0399 consensus
Probab=99.86 E-value=1.3e-21 Score=145.65 Aligned_cols=279 Identities=18% Similarity=0.160 Sum_probs=173.5
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCH----HHHHH--HHHHH
Q ss_conf 9810174629989896256868501266334300025699999999809906605202211286----68889--99998
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDH----NAIKS--FELRQ 112 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~----~~~~~--~~~~~ 112 (337)
+.+++|+-.++|.-+ |...+||+|+.+...+ ..+|.++++.|.-.++|+++.-...- ...+. -.+++
T Consensus 942 IPl~~VEPaseIv~R-----FcTGaMS~GsIS~EtH--~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~d~~d~~rSAIKQ 1014 (2142)
T KOG0399 942 IPLEEVEPASEIVKR-----FCTGAMSYGSISMETH--TTLAIAMNRLGGKSNTGEGGEDPERSKPLADGVDTMRSAIKQ 1014 (2142)
T ss_pred CCHHHCCCHHHHHHH-----HHCCCCCCCCCCHHHH--HHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHH
T ss_conf 743424837999999-----8325566540006567--899999986058677888887765524455643178999999
Q ss_pred HCCCHH----------HHHCCCCCCCC---C-----CCCH-HHHHHHHH-HHCCCEEEECCCCHHHHHHHCCCCCHHHHH
Q ss_conf 664012----------32202752123---6-----7998-99998776-508985762532035665206885243079
Q gi|254781020|r 113 YAPHTV----------LISNLGAVQLN---Y-----DFGV-QKAHQAVH-VLGADGLFLHLNPLQEIIQPNGNTNFADLS 172 (337)
Q Consensus 113 ~~~~~~----------~~~~~~~~~~~---~-----~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (337)
.+...+ ...++...|.. + +..+ ..+.+.++ ..+...+ .++|+ ......+++.
T Consensus 1015 VASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLI---SPPPH-----HDIYSIEDLa 1086 (2142)
T KOG0399 1015 VASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLI---SPPPH-----HDIYSIEDLA 1086 (2142)
T ss_pred HHCCCCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCC---CCCCC-----CCCCCHHHHH
T ss_conf 861346665111047156654775179999788787614668999863688998757---89986-----6623488999
Q ss_pred HHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCC-HHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 999999987399-717850478668899999997699799945888865100-123102344323244310634688999
Q gi|254781020|r 173 SKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSR-IESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 173 ~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~-~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
..|-.++...+. .+-+|+|..+...-.+...+++.||-|.||||-|+++++ +.+.++ +...|+.|+...+..+
T Consensus 1087 QLIyDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~-----AGlPWELGlAEThQtL 1161 (2142)
T KOG0399 1087 QLIYDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKH-----AGLPWELGLAETHQTL 1161 (2142)
T ss_pred HHHHHHHCCCCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCC-----CCCCHHHCCHHHHHHH
T ss_conf 99988650698760379997405612665110136676699814678867665412334-----7987310404665677
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH----------------------------CCCHHHHH
Q ss_conf 99852289879972988888999999983888523347999984----------------------------14668999
Q gi|254781020|r 251 MARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA----------------------------MDSSDAVV 302 (337)
Q Consensus 251 ~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~----------------------------~~G~~gv~ 302 (337)
-...++.++-+-.||++|||.||+-|-+|||+-.++++..|.+. .+-++.|.
T Consensus 1162 v~NdLR~rvVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvV 1241 (2142)
T KOG0399 1162 VLNDLRGRVVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVV 1241 (2142)
T ss_pred HHCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCHHHH
T ss_conf 64261302799836850233689999983730315440179987669998860578874111389888965799927788
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCC
Q ss_conf 99999999999999980898578961496000569
Q gi|254781020|r 303 AAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ 337 (337)
Q Consensus 303 ~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~~ 337 (337)
+++..+.+|+|..|+++|+++|+|+.+++++++.+
T Consensus 1242 Nff~yvaEEvR~imakLGfrtldemvGrtdlLk~~ 1276 (2142)
T KOG0399 1242 NFFFYVAEEVRGIMAKLGFRTLDEMVGRTDLLKAR 1276 (2142)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCC
T ss_conf 99999999999999883810588873615442234
No 44
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.84 E-value=1.8e-18 Score=127.10 Aligned_cols=249 Identities=17% Similarity=0.119 Sum_probs=144.5
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH-------------------
Q ss_conf 98101746299898962568685012663343000256999999998099066-0520221-------------------
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM------------------- 98 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~------------------- 98 (337)
...++.+++|+++|.+|++||++|+ | - ... ..+......+|..|+ +|+.+..
T Consensus 32 ~~~~~~~l~~~i~Gl~f~nPiGlAA--G-f---DKn--~~~~~~~~~lGfGfvevGTVT~~pq~GNpkPRifRl~~~~ai 103 (327)
T cd04738 32 LVYDDPRLEVEVFGLTFPNPVGLAA--G-F---DKN--AEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEAL 103 (327)
T ss_pred CCCCCCCCCEEECCEECCCCCEECC--C-C---CCC--HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCEEECCCCCEE
T ss_conf 3689966556888755699586545--8-8---988--589999996698679971436888889999857974675401
Q ss_pred ----HCCHHHHHHHH--HHHHC-CCHHHHHCCCCCCCCC-CCCHHHHHHHHHHH--CCCEEEECCCCHHHHHHHCCCCCH
Q ss_conf ----12866888999--99866-4012322027521236-79989999877650--898576253203566520688524
Q gi|254781020|r 99 ----FSDHNAIKSFE--LRQYA-PHTVLISNLGAVQLNY-DFGVQKAHQAVHVL--GADGLFLHLNPLQEIIQPNGNTNF 168 (337)
Q Consensus 99 ----~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 168 (337)
-.+..+.+.+. +.... ...++..|++...... +..+++.....+.. -+|.++++++||+..-... ....
T Consensus 104 iN~~GfnN~G~~~~~~~L~~~~~~~~~lgvnIg~nk~t~~e~~~~Dy~~~~~~l~~~aDy~~iNiSsPNt~glr~-lq~~ 182 (327)
T cd04738 104 INRMGFNNDGADAVAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRD-LQGK 182 (327)
T ss_pred EHHCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCH
T ss_conf 100458717699999999840456871799985047882676899999999985355778999546889845100-2688
Q ss_pred HHHHHHHHHHHHHC-----CCCEEEEECCCCCCH---HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 30799999999873-----997178504786688---9999999769979994588886510012310234432324431
Q gi|254781020|r 169 ADLSSKIALLSSAM-----DVPLLLKEVGCGLSS---MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240 (337)
Q Consensus 169 ~~~~~~i~~l~~~~-----~~pii~k~v~~~~~~---~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~ 240 (337)
+.+.+.++++++.. +.|+++|..++..+. +.+..+.+.|+|++++.|+ +.......+..........++
T Consensus 183 ~~l~~ll~~v~~~~~~~~~~~Pi~vKlsPD~~~~~i~~i~~~~~~~g~dGvi~tNT---t~~r~~~~~~~~~~~~GGlSG 259 (327)
T cd04738 183 EALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNT---TISRPGLLRSPLANETGGLSG 259 (327)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999853778866998179976678999999999739978999588---555421245655566686364
Q ss_pred CCCCHH--HHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHH
Q ss_conf 063468--89999985-228987997298888899999998388852334799998414668999
Q gi|254781020|r 241 WGIPTP--LSLEMARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVV 302 (337)
Q Consensus 241 ~gi~~~--~al~~~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~ 302 (337)
..+... ..+..+++ ...++|||+.|||.++.|+.+.|.+||++||++|.+.| .|+.-+.
T Consensus 260 ~pl~~~s~~~v~~v~~~~~~~~pIIgvGGI~s~~Da~e~i~aGAslVQiyT~liy---~GP~li~ 321 (327)
T cd04738 260 APLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY---EGPGLVK 321 (327)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCCHHHH
T ss_conf 0678999999999999749998199988979999999999869969987689893---1906999
No 45
>KOG1436 consensus
Probab=99.82 E-value=3.6e-19 Score=131.21 Aligned_cols=285 Identities=19% Similarity=0.174 Sum_probs=159.6
Q ss_pred HHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHH------
Q ss_conf 688630324557899810174629989896256868501266334300025699999999809906-6052022------
Q gi|254781020|r 25 FFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRV------ 97 (337)
Q Consensus 25 ~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~------ 97 (337)
-+-.|.|+||.- =-++-.+.|+|+|++|++||++|+ |-.+... ++-..+. .|..+ .+||...
T Consensus 66 ~aas~gl~Pr~~---~~d~~~L~~k~~g~~f~NPiglAA---Gfdk~~e----aidgL~~-~gfG~ieigSvTp~pqeGN 134 (398)
T KOG1436 66 LAASWGLLPRDR---VADDASLETKVLGRKFSNPIGLAA---GFDKNAE----AIDGLAN-SGFGFIEIGSVTPKPQEGN 134 (398)
T ss_pred HHHHHCCCCHHC---CCCCCCHHHHHHHHHCCCCHHHHH---CCCCCHH----HHHHHHH-CCCCEEEECCCCCCCCCCC
T ss_conf 997717775100---578652246774010268301321---3575468----8888874-7876499546545787899
Q ss_pred -----------------HHCCHHHHHHHHHHH-----HC-CCHHH--HHCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEE
Q ss_conf -----------------112866888999998-----66-40123--220275212367998999987765-08985762
Q gi|254781020|r 98 -----------------MFSDHNAIKSFELRQ-----YA-PHTVL--ISNLGAVQLNYDFGVQKAHQAVHV-LGADGLFL 151 (337)
Q Consensus 98 -----------------~~~~~~~~~~~~~~~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 151 (337)
+-.+.++.+.+..+- .. ++... ..|++......+...+..+....- .-+|.+++
T Consensus 135 PkPRvfrl~ed~~vINryGfns~Gi~~vl~rl~~~r~~~~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylvi 214 (398)
T KOG1436 135 PKPRVFRLPEDLAVINRYGFNSEGIDAVLQRLRAKRQAKYPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVI 214 (398)
T ss_pred CCCCEEECCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 99856862654230010578842499999999988873178865321056234657745678899876512454665899
Q ss_pred CCCCHHHH--HHHCCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCH--HHH-HHHHHCCCCEEEECCCCCCCCC
Q ss_conf 53203566--520688524307999999998----73997178504786688--999-9999769979994588886510
Q gi|254781020|r 152 HLNPLQEI--IQPNGNTNFADLSSKIALLSS----AMDVPLLLKEVGCGLSS--MDI-ELGLKSGIRYFDIAGRGGTSWS 222 (337)
Q Consensus 152 ~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~----~~~~pii~k~v~~~~~~--~~~-~~a~~aGad~i~v~~~gG~~~~ 222 (337)
++++|+.. .+...+...+.....+...++ .-+.|+++|..+....- +++ ..+.+...|+++++|. +..
T Consensus 215 NvSsPNtpGlr~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~Ivsnt---tVs 291 (398)
T KOG1436 215 NVSSPNTPGLRSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNT---TVS 291 (398)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCEEECCC---EEE
T ss_conf 55699986626553277899999999998860456889865888565242778989999999837563661385---662
Q ss_pred CHHHHCCC-CCCCCHHHHHCCCCHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCC
Q ss_conf 01231023-443232443106346889999985----2289879972988888999999983888523347999984146
Q gi|254781020|r 223 RIESHRDL-ESDIGIVFQDWGIPTPLSLEMARP----YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDS 297 (337)
Q Consensus 223 ~~~~~r~~-~~~~~~~~~~~gi~~~~al~~~~~----~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G 297 (337)
.+...-+. ...-+...++..+.++ ++..+++ .+.+||||+.|||.+|.|+++-|.+||+.||+++++.| +|
T Consensus 292 rp~~~~~~~~~~etGGLsG~plk~~-st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y---eG 367 (398)
T KOG1436 292 RPKASLVNKLKEETGGLSGPPLKPI-STNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY---EG 367 (398)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHH---CC
T ss_conf 4710101666435688789866366-8999999998636887468416856547699998627139988887762---67
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 6899999999999999999980898578961496
Q gi|254781020|r 298 SDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNT 331 (337)
Q Consensus 298 ~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~ 331 (337)
+. .++.++.||...|...|++++.|++++.
T Consensus 368 p~----i~~kIk~El~~ll~~kG~t~v~d~iG~~ 397 (398)
T KOG1436 368 PA----IIEKIKRELSALLKAKGFTSVDDAIGKD 397 (398)
T ss_pred CH----HHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 43----5889998899999750777398860577
No 46
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.81 E-value=7.5e-18 Score=123.47 Aligned_cols=249 Identities=14% Similarity=0.068 Sum_probs=137.4
Q ss_pred EEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHH---------------------HHCCHHHH
Q ss_conf 99898962568685012663343000256999999998099066-052022---------------------11286688
Q gi|254781020|r 48 VEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRV---------------------MFSDHNAI 105 (337)
Q Consensus 48 t~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~---------------------~~~~~~~~ 105 (337)
+++.|.+|++||++|+-.. . .. ....+.....|..++ +++... +-+.....
T Consensus 1 vt~~Gl~~~NPi~~AaG~~-~----~~--~e~~~~l~~~G~G~v~~kTit~~p~~GNp~PR~~r~~~~~iN~~G~~n~G~ 73 (294)
T cd04741 1 VTPPGLTISPPLMNAAGPW-C----TT--LEDLLELAASSTGAVTTRSSTLAGRPGNPEPRYYAFPLGSINSLGLPNLGL 73 (294)
T ss_pred CCCCCCCCCCCCEECCCCC-C----CC--HHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCCH
T ss_conf 9068982899788745899-9----99--999999997696099928438767779999848855514666444788488
Q ss_pred H-HHH-HHHH---CC--CHHHHHCCCCCCCCCCCCHHHHHHHH--HHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 8-999-9986---64--01232202752123679989999877--65089857625320356652068852430799999
Q gi|254781020|r 106 K-SFE-LRQY---AP--HTVLISNLGAVQLNYDFGVQKAHQAV--HVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIA 176 (337)
Q Consensus 106 ~-~~~-~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 176 (337)
+ +.+ +... .+ ..+++.++... .+-.+....+.. ....+|+++++++||+...........+.+.+.++
T Consensus 74 ~~~~~~l~~~~~~~~~~~~pvi~si~g~---~~d~~~~~~~~~~~~~~~aD~ielNiScPn~~g~~~~~~~~~~~~~~~~ 150 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS---AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLT 150 (294)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCC---CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHCCCHHHHHHHHH
T ss_conf 9999999998654655587089989998---3679999999986522556479997037898873100139999999999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHH--HHHHHH---CCCCEEEECCCCCC-CCCCHHHHCCCCC-C-CCHHHHHCCCCHHHH
Q ss_conf 99987399717850478668899--999997---69979994588886-5100123102344-3-232443106346889
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMD--IELGLK---SGIRYFDIAGRGGT-SWSRIESHRDLES-D-IGIVFQDWGIPTPLS 248 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~--~~~a~~---aGad~i~v~~~gG~-~~~~~~~~r~~~~-~-~~~~~~~~gi~~~~a 248 (337)
++++..+.|+++|+.+.....+. ...+.+ .|++++...|.-+. ...+....+.... . .....++..+.+. +
T Consensus 151 ~v~~~~~~Pv~vKlsP~~~~~~~~~~~~~~~~~~~g~~~i~~~nt~~~~l~id~~~~~~~~~~~~~~GGlSG~~l~p~-a 229 (294)
T cd04741 151 AVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPL-A 229 (294)
T ss_pred HHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-H
T ss_conf 998415785599728988878999999998657887479998803677633357765643345566666678521589-9
Q ss_pred HH---HHHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99---99852-28987997298888899999998388852334799998414668999999999999999
Q gi|254781020|r 249 LE---MARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 249 l~---~~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~ 314 (337)
+. .+++. ..++|||+.|||.++.|+++.|.+||++||++|+++| .|+. .+..+.+||+.
T Consensus 230 l~~v~~~~~~~~~~i~Iig~GGI~s~~da~e~i~aGAs~VQv~Tal~~---~Gp~----~~~~I~~~L~e 292 (294)
T cd04741 230 LGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK---EGPK----VFARIEKELED 292 (294)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCHH----HHHHHHHHHHH
T ss_conf 999999999749998799989979999999999839979999799997---0929----99999987996
No 47
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.80 E-value=1.6e-17 Score=121.58 Aligned_cols=258 Identities=16% Similarity=0.138 Sum_probs=144.5
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEE-CCCCHHH-------------------
Q ss_conf 98101746299898962568685012663343000256999999998099066-0520221-------------------
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMA-VGSQRVM------------------- 98 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~-~g~~~~~------------------- 98 (337)
...++.+++++++|.+|++||.+|+ | -. ..+ ..-.....+|..|+ +|+....
T Consensus 38 ~~~~~~~L~~~i~Gl~f~nPiGLAA--G-fD---Kn~--e~~~~l~~lGFGfvEvGTVT~~pq~GNpkPR~fRl~~~~al 109 (336)
T PRK05286 38 LRYKDPRLPVTVMGLTFPNPVGLAA--G-FD---KNG--EAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEAL 109 (336)
T ss_pred HCCCCCCCCEEECCEECCCCCEECC--C-CC---CCC--CCCCCHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCEE
T ss_conf 1589866676888854699675556--7-89---997--10372665686669970516998799999717981377637
Q ss_pred ----HCCHHHHHHH--HHHHHCC-CHHHHHCCCCCCCC-CCCCHHHHHHHHHHH--CCCEEEECCCCHHHHHHHCCCCCH
Q ss_conf ----1286688899--9998664-01232202752123-679989999877650--898576253203566520688524
Q gi|254781020|r 99 ----FSDHNAIKSF--ELRQYAP-HTVLISNLGAVQLN-YDFGVQKAHQAVHVL--GADGLFLHLNPLQEIIQPNGNTNF 168 (337)
Q Consensus 99 ----~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 168 (337)
-.+..+.+.+ ++....+ ..++..|++..... .+..+++.....+.. -+|.+.++++||+..--.. -...
T Consensus 110 iNr~GfnN~G~~~~~~~L~~~~~~~~~lGvnIg~nk~t~~e~~~~Dy~~~~~~l~~~aDy~~INiSsPNT~glr~-lq~~ 188 (336)
T PRK05286 110 INRMGFNNEGADALAERLKKAKPYKGPLGINIGKNKDTPLEDAVDDYLICLRKLYPYADYFTVNISSPNTPGLRD-LQAG 188 (336)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC-CCCH
T ss_conf 850577986899999999850567886589976237884166899999999998263778999756899865200-0466
Q ss_pred HHHHHHHHHHHHHC-----CCCEEEEECCCCCCH---HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHH
Q ss_conf 30799999999873-----997178504786688---9999999769979994588886510012310234432324431
Q gi|254781020|r 169 ADLSSKIALLSSAM-----DVPLLLKEVGCGLSS---MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240 (337)
Q Consensus 169 ~~~~~~i~~l~~~~-----~~pii~k~v~~~~~~---~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~ 240 (337)
+.+.+.++++++.. +.|+++|..++..+. +.+..+.+.|+|+++++|. +... ............+.++
T Consensus 189 ~~L~~ll~~v~~~~~~~~~~~PI~vKisPDl~~~~l~~i~~~~~~~~idGii~tNT---t~~r-~~l~~~~~~~~GGLSG 264 (336)
T PRK05286 189 EALDELLAALKEAQAELGKYVPLLLKIAPDLSDEELDDIADLALEHGIDGIIATNT---TLDR-SGLEGPNAEEAGGLSG 264 (336)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECC---CCCC-CCCCCCCCCCCCCCCC
T ss_conf 99999999999999843788864883288888789999999999819868999588---6766-4456655566687464
Q ss_pred CCCCHH--HHHHHHHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 063468--89999985-22898799729888889999999838885233479999841466899999999999999999
Q gi|254781020|r 241 WGIPTP--LSLEMARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 241 ~gi~~~--~al~~~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m 316 (337)
..+... ..+..+++ ..+++|||+.|||.++.|+.+.|.+|||.||+.|.+.| .|+. ++..+..||...|
T Consensus 265 ~pl~~~s~~~v~~~~~~~~~~~pIIgvGGI~s~~da~~~i~aGAslVQlyTgliy---~GP~----lv~~I~~~L~~lL 336 (336)
T PRK05286 265 RPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY---EGPG----LVKEIVRGLARLL 336 (336)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCHH----HHHHHHHHHHHHC
T ss_conf 0678999999999999739997099989989999999999869968874167872---1907----9999999999759
No 48
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase; InterPro: IPR005993 Guanosine monophosphate reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences. ; GO: 0003920 GMP reductase activity, 0009117 nucleotide metabolic process.
Probab=99.77 E-value=1.7e-17 Score=121.30 Aligned_cols=277 Identities=16% Similarity=0.145 Sum_probs=191.8
Q ss_pred HHHHHHHHEEECCCCCCCCHHHCCCEEEEC----CEEEC-CCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCH
Q ss_conf 475688630324557899810174629989----89625-6868501266334300025699999999809906605202
Q gi|254781020|r 22 NKKFFDDWHLIHRALPEISFDEVDPSVEFL----GKKLS-FPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQR 96 (337)
Q Consensus 22 n~~~fd~~~l~p~~l~~~~~~~vdlst~i~----G~~l~-~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~ 96 (337)
....|.|++|+|..-..-++++|+|.-+|. ...++ .|++.+.|+.... -.+|.+.+...+...+.
T Consensus 6 ~kl~fkdvl~rPkrs~lksr~~v~l~r~~~f~~s~~~~~G~P~~~~nmdtvGt-------f~ma~~l~~~~~~t~~h--- 75 (343)
T TIGR01305 6 LKLDFKDVLLRPKRSTLKSRADVELEREFTFRNSKQTYSGVPIIAANMDTVGT-------FEMAAALASHKILTAIH--- 75 (343)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCEECCEEEEECCCCEECCCCEEEECCCCCHH-------HHHHHHHHHHHHHHHHH---
T ss_conf 25562014641661001121100001002331146600354267633542105-------78999875225664666---
Q ss_pred HHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCC-EEEECCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf 211286688899999866401232202752123679989999877650898-5762532035665206885243079999
Q gi|254781020|r 97 VMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGAD-GLFLHLNPLQEIIQPNGNTNFADLSSKI 175 (337)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i 175 (337)
.++. ..+|... ........+.++.......+.+++......+....- .++ ++.. ....+..-+.+
T Consensus 76 khys---~~~W~~f-~~~~~~~~l~~~~~s~G~~~~d~~k~~~~~~~~P~~~~~C--~dva--------nGyse~fv~f~ 141 (343)
T TIGR01305 76 KHYS---VDEWKAF-AASASPDVLKNVAVSSGSSDNDLEKLKSILEEVPQLKFIC--LDVA--------NGYSEHFVEFV 141 (343)
T ss_pred HHCC---HHHHHHH-HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEE--EEEC--------CCCHHHHHHHH
T ss_conf 5303---6889998-7213345765433305885446899999997267703799--8603--------56217899999
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99998739971785047866889999999769979994588886510012310234432324431063468899999852
Q gi|254781020|r 176 ALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY 255 (337)
Q Consensus 176 ~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~ 255 (337)
+.+|+.|+..-+. .||+.+.+..+.++-.|+|.|.|+-..|.. |++| ...+.|.|++.++.+|+..
T Consensus 142 ~~~r~~~P~~ti~--aGnvvtGem~eelilsGadi~kvG~GPGsv----Cttr--------~k~GvGyPqlsav~eCad~ 207 (343)
T TIGR01305 142 KKVREAYPKKTIM--AGNVVTGEMVEELILSGADIVKVGIGPGSV----CTTR--------KKTGVGYPQLSAVIECADA 207 (343)
T ss_pred HHHHHHCCCCEEE--ECCCEEHHHHHHHHHCCCCEEEECCCCCCE----ECCC--------CCCCCCCHHHHHHHHHHHH
T ss_conf 9999736533043--134100467787773476379963588750----1122--------0045675136676543210
Q ss_pred CCC--CEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH--------------------------------------HC
Q ss_conf 289--87997298888899999998388852334799998--------------------------------------41
Q gi|254781020|r 256 CNE--AQFIASGGLRNGVDILKSIILGASLGGLASPFLKP--------------------------------------AM 295 (337)
Q Consensus 256 ~~~--v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~--------------------------------------~~ 295 (337)
... =.|+.|||..+++||+||++.|||+||+|.-|-.- +.
T Consensus 208 ahGl~G~~~sdGGC~~PGdvakaf~~gadfvm~GG~~~Gh~~~~G~~~e~nG~k~~lfyGmss~~am~~h~G~vaeyra~ 287 (343)
T TIGR01305 208 AHGLKGHIVSDGGCTTPGDVAKAFGAGADFVMLGGLLAGHEESGGEVVEENGKKFKLFYGMSSDTAMKKHAGGVAEYRAS 287 (343)
T ss_pred CCCCCCEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCEEEEEECCCHHHHHHHCCCCCCEEECC
T ss_conf 15755248726888981267887734777676522011532101145220686588875155267775315751001126
Q ss_pred CCH-------HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
Q ss_conf 466-------89999999999999999998089857896149600056
Q gi|254781020|r 296 DSS-------DAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRH 336 (337)
Q Consensus 296 ~G~-------~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~i~~ 336 (337)
+|. --|++.+..+.+.||+.-.|.|++.++||.++.-|||-
T Consensus 288 eGktv~~P~~G~v~~t~~dilGG~rs~Cty~Ga~~lkel~~r~tfirv 335 (343)
T TIGR01305 288 EGKTVKVPYRGDVENTVRDILGGLRSACTYVGAKKLKELAKRATFIRV 335 (343)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEE
T ss_conf 885787214577467999873004455566547888876410014687
No 49
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.74 E-value=2.1e-16 Score=114.98 Aligned_cols=192 Identities=17% Similarity=0.178 Sum_probs=113.0
Q ss_pred ECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH-HH-HHHHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 25686850126633430002569999999980990660520221128668-88-99999866401232202752123679
Q gi|254781020|r 55 LSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA-IK-SFELRQYAPHTVLISNLGAVQLNYDF 132 (337)
Q Consensus 55 l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (337)
++.||+.+||++.+ +..|+.+..+.|..-.++... ...+. .. ..++++.. ..+...|+... ....
T Consensus 1 i~~PIi~a~M~~vs-------~~~LaaAvs~aGglG~l~~~~---~~~~~l~~~i~~~~~~~-~~pfgvnl~~~--~~~~ 67 (236)
T cd04730 1 IRYPIIQAPMAGVS-------TPELAAAVSNAGGLGFIGAGY---LTPEALRAEIRKIRALT-DKPFGVNLLVP--SSNP 67 (236)
T ss_pred CCCCEECCCCCCCC-------CHHHHHHHHHCCCEEEECCCC---CCHHHHHHHHHHHHHHC-CCCEEECCCCC--CCCC
T ss_conf 97486878877878-------699999999689855857888---99999999999999746-99724433246--7763
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
..+...+...+.+.+.+..+...+ .+.++++++. +.+++ ..+.+.+.++++.++|+|+|+
T Consensus 68 ~~~~~~~~~~~~~v~~v~~~~g~p---------------~~~v~~l~~~-g~~v~----~~v~s~~~A~~a~~~GaD~iv 127 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPP---------------AEVVERLKAA-GIKVI----PTVTSVEEARKAEAAGADALV 127 (236)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCC---------------HHHHHHHHHC-CCEEE----EECCCHHHHHHHHHCCCCEEE
T ss_conf 689999999976999999879897---------------8999999982-99899----958989999999981899899
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 45888865100123102344323244310634688999998522898799729888889999999838885233479999
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
+.|+..++. .. ...+++...++.+++. -++|||++|||.++.|+.++|++|||+|++||.|+.
T Consensus 128 ~qG~eAGGH--------~g--------~~~~~~~~lv~~v~~~-~~ipviaAGGI~~g~~i~aal~lGA~gV~~GTrfl~ 190 (236)
T cd04730 128 AQGAEAGGH--------RG--------TFDIGTFALVPEVRDA-VDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 190 (236)
T ss_pred EECCCCCCC--------CC--------CCCCCHHHHHHHHHHH-HCCCEEEECCCCCHHHHHHHHHHCCCEEEECCHHHH
T ss_conf 977777778--------89--------8755567799999998-298689654627789999999808979995538570
Q ss_pred HHCC
Q ss_conf 8414
Q gi|254781020|r 293 PAMD 296 (337)
Q Consensus 293 ~~~~ 296 (337)
.-+.
T Consensus 191 t~Es 194 (236)
T cd04730 191 TEES 194 (236)
T ss_pred CCCC
T ss_conf 8454
No 50
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=99.72 E-value=3.7e-16 Score=113.50 Aligned_cols=99 Identities=20% Similarity=0.211 Sum_probs=67.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 99999987399717850478668899999997699799945888865100123102344323244310634688999998
Q gi|254781020|r 174 KIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR 253 (337)
Q Consensus 174 ~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~ 253 (337)
.++.++ .++.++ +..+.+.+.++++.++|+|+|++.|...++. +.. ..+.++...++.+.
T Consensus 129 ~v~~~~-~~G~~v----~~~v~s~~~A~~a~~~G~D~iV~qG~eAGGH------~G~---------~~~~~~~~L~~~v~ 188 (330)
T pfam03060 129 VIERLK-ESGTKV----IPTVSSAKEARKAEAAGADAVVAQGPEAGGH------RGT---------EVGTGTFLLVPTVV 188 (330)
T ss_pred HHHHHH-HCCCEE----EEECCCHHHHHHHHHCCCCEEEEECCCCCCC------CCC---------CCCCCHHHHHHHHH
T ss_conf 999999-879989----9981899999999981999899966766777------888---------77730777789999
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 5228987997298888899999998388852334799998
Q gi|254781020|r 254 PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 254 ~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
+. .++|||+.|||.+|.|+..||+|||++|++||.|+-.
T Consensus 189 ~~-~~iPvIaAGGI~dg~~iaaalalGA~gV~mGTrFlat 227 (330)
T pfam03060 189 DA-VDIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLAT 227 (330)
T ss_pred HH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEEEC
T ss_conf 87-1697785266289999999996799899971300115
No 51
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.71 E-value=7.7e-16 Score=111.63 Aligned_cols=187 Identities=15% Similarity=0.091 Sum_probs=109.2
Q ss_pred EECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHHH-HHHHHCCCHHHHHCCCCCCCCCCC
Q ss_conf 6256868501266334300025699999999809906605202211286688899-999866401232202752123679
Q gi|254781020|r 54 KLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSF-ELRQYAPHTVLISNLGAVQLNYDF 132 (337)
Q Consensus 54 ~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 132 (337)
.++.||+.+||.+.+. ..|+.+.++.|..-.++...... +...... ++++ ..+.+...|+... ..
T Consensus 9 gi~~PIiqapM~~vs~-------~~La~AVs~aGglG~l~~~~~~~--e~l~~~i~~~~~-~td~P~gvnl~~~----~~ 74 (307)
T TIGR03151 9 GIEYPIFQGGMAWVAT-------GSLAAAVSNAGGLGIIGAGNAPP--DVVRKEIRKVKE-LTDKPFGVNIMLL----SP 74 (307)
T ss_pred CCCCCEECCCCCCCCC-------HHHHHHHHHCCCEEEECCCCCCH--HHHHHHHHHHHH-HCCCCCEEEEEEC----CC
T ss_conf 8994978788777787-------89999998089841667888999--999999999998-5279860433323----88
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
..++......+.+.+.+..+...| .+.++++++. +.+++. .+.+...++++.++|+|+|+
T Consensus 75 ~~~~~~~~~~e~~v~vv~~~~G~p---------------~~~~~~~~~~-g~~v~~----~v~s~~~A~~a~~~G~D~iV 134 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTTGAGNP---------------GKYIPRLKEN-GVKVIP----VVASVALAKRMEKAGADAVI 134 (307)
T ss_pred CHHHHHHHHHHHCCCCEEECCCCC---------------HHHHHHHHHC-CCEEEE----EECCHHHHHHHHHCCCCEEE
T ss_conf 899999999860898247279996---------------8999999985-997999----81899999999964999999
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 45888865100123102344323244310634688999998522898799729888889999999838885233479999
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
+.|...++. . + .+++...++.+.+. -++|||+.|||.+|.+++.||+|||+.|++||.|+-
T Consensus 135 ~qG~EAGGH--------~-G---------~~~~~~Lvp~v~d~-~~iPViAAGGI~dgr~iaaalalGA~gV~mGTrFla 195 (307)
T TIGR03151 135 AEGMESGGH--------I-G---------ELTTMALVPQVVDA-VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred EECCCCCCC--------C-C---------CCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHCCCCEEEECHHHHC
T ss_conf 745544687--------7-8---------64378779999850-468657641133658899999718847874419771
Q ss_pred H
Q ss_conf 8
Q gi|254781020|r 293 P 293 (337)
Q Consensus 293 ~ 293 (337)
.
T Consensus 196 t 196 (307)
T TIGR03151 196 A 196 (307)
T ss_pred C
T ss_conf 8
No 52
>TIGR01036 pyrD_sub2 dihydroorotate oxidase; InterPro: IPR005719 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This model describes dihydroorotate dehydrogenase subfamily 2 and includes members from bacteria and eukaryotes. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus, however subfamily 2 has a longer N-terminal region.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0016020 membrane.
Probab=99.71 E-value=4.6e-16 Score=112.97 Aligned_cols=275 Identities=16% Similarity=0.115 Sum_probs=164.9
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHHHHC-----------------
Q ss_conf 9810174629989896256868501266334300025699999999809906-6052022112-----------------
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRVMFS----------------- 100 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~~~~----------------- 100 (337)
+..+|+-+..+++|.+|++|+.+|+ |-. .+++. -.+--++|..| -+||.....+
T Consensus 41 ~~~~~P~L~~~vlG~~FpNPlGLAA---GfD---K~G~a--~d~l~AmGFG~~EiGTVTp~pQ~GN~~PRlFRL~e~~~l 112 (370)
T TIGR01036 41 LGAKDPVLEVTVLGLKFPNPLGLAA---GFD---KDGEA--LDALGAMGFGYLEIGTVTPKPQPGNPRPRLFRLIEDEAL 112 (370)
T ss_pred CCCCCCCCCCEECCCCCCCCHHHHC---CCC---CCHHH--HHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 6888788643123410686133423---799---87669--987564184247541205888667777864254557887
Q ss_pred -CHHHHHH-------HHHHH--------HCCCHHHHHCCCCCC-CCCCCCHHHHHHHHHHHC--CCEEEECCCCHH--HH
Q ss_conf -8668889-------99998--------664012322027521-236799899998776508--985762532035--66
Q gi|254781020|r 101 -DHNAIKS-------FELRQ--------YAPHTVLISNLGAVQ-LNYDFGVQKAHQAVHVLG--ADGLFLHLNPLQ--EI 159 (337)
Q Consensus 101 -~~~~~~~-------~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~ 159 (337)
++.+... ..++. ..+..++-.|++-.. .......++.+....+.. ++.+.++++-|+ +.
T Consensus 113 iNRmGFNN~G~~~l~~~~k~~qqkqakla~y~~piGiNiGKNK~t~~~~a~~DY~~~~~~~~~~A~Y~~vN~SSPNTPgL 192 (370)
T TIGR01036 113 INRMGFNNHGADLLVERLKRFQQKQAKLARYKGPIGINIGKNKKTPAEDAKEDYKACLRKVGPLADYLVVNVSSPNTPGL 192 (370)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH
T ss_conf 63205205679999999998654542027898526432488866654422668999999873210707886358897351
Q ss_pred HHHCCCCCHHHHHHHH----HHHHHHCC--CCEEEEECCCCCCH---HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCC
Q ss_conf 5206885243079999----99998739--97178504786688---999999976997999458888651001231023
Q gi|254781020|r 160 IQPNGNTNFADLSSKI----ALLSSAMD--VPLLLKEVGCGLSS---MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDL 230 (337)
Q Consensus 160 ~~~~~~~~~~~~~~~i----~~l~~~~~--~pii~k~v~~~~~~---~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~ 230 (337)
........+..+...+ ..|+.... .|+.||..+.-++- +.+..++++++|||++-|+ |.+..-+....
T Consensus 193 R~LQ~~~~~~~LL~~~k~~~~~L~~~~~KY~P~~VKIAPDL~~~dl~~IAd~~v~~~~dG~IATNT---T~sR~~Gv~g~ 269 (370)
T TIGR01036 193 RDLQYKESLRDLLTAVKEETDGLRRVHRKYVPVLVKIAPDLSESDLLDIADSAVELGIDGIIATNT---TVSRDLGVTGP 269 (370)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC---EECCCCCCCCC
T ss_conf 324014358999999999999999861278857897268988213899999998718984898445---10252002563
Q ss_pred CC--CCCHHHHHCCCCHH--HHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 44--32324431063468--899999-85228987997298888899999998388852334799998414668999999
Q gi|254781020|r 231 ES--DIGIVFQDWGIPTP--LSLEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAI 305 (337)
Q Consensus 231 ~~--~~~~~~~~~gi~~~--~al~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l 305 (337)
.. .-..+.++..+..- +-+.+. .++.+++|||..|||.+..++.+-|.+||+.||+-|+|+| .|+ +++
T Consensus 270 k~~r~~~GGLSGkPL~~kS~eiirrL~~~~~gr~piIgVGGI~~~~~A~EkI~AGASLlQ~YsgfIy---~GP----~l~ 342 (370)
T TIGR01036 270 KNSREETGGLSGKPLQKKSTEIIRRLYKELKGRLPIIGVGGISSAQNALEKIKAGASLLQIYSGFIY---KGP----PLV 342 (370)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCHHHHHHHCCCC---CCC----HHH
T ss_conf 2143567898875144778999999999964957899627857478899999847124456423466---771----679
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHCCC
Q ss_conf 99999999999980898578961496
Q gi|254781020|r 306 ESLRKEFIVSMFLLGTKRVQELYLNT 331 (337)
Q Consensus 306 ~~l~~el~~~m~~~G~~~i~el~~~~ 331 (337)
..+..+|+..+..-|+-++.|=-+..
T Consensus 343 k~i~~~i~~lL~~~GFgsv~eAiGad 368 (370)
T TIGR01036 343 KEIVKEIEKLLKEDGFGSVKEAIGAD 368 (370)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHCCCC
T ss_conf 99999999997517961224410235
No 53
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.63 E-value=1.4e-13 Score=98.41 Aligned_cols=248 Identities=15% Similarity=0.050 Sum_probs=145.0
Q ss_pred EECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHH--CCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 989896256868501266334300025699999999809906605202211--286688899999866401232202752
Q gi|254781020|r 49 EFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMF--SDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 49 ~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
+|++.++++|+++|||+|.+.. .+-..+.+.|..++.+++-..- ....-...+.. ...+.... ...
T Consensus 2 ~ig~~~~~~~l~lAPMagvtd~-------~FR~l~~~~Ga~l~~TEmv~a~~~~~~~~~~~~~~--~~~~~~~~---~~v 69 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDR-------PFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRM--VHVDEPGI---RTV 69 (321)
T ss_pred CCCCEECCCCEEECCCCCCCCH-------HHHHHHHHHCCCEEEECCEEECHHHHCCHHHHHHH--CCCCCCCC---CEE
T ss_conf 3798844898897357899489-------99999999883999987587127773384889863--04678898---059
Q ss_pred CCCCCCCHH---HHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEEC-CC---C
Q ss_conf 123679989---9998776508985762532035665206885-----2430799999999873997178504-78---6
Q gi|254781020|r 127 QLNYDFGVQ---KAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKEV-GC---G 194 (337)
Q Consensus 127 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~v-~~---~ 194 (337)
|+.. .+.+ ...+.....+++.+.++..||...+...+.. +.....+.++.+++..+.|+-+|.= |. .
T Consensus 70 Ql~G-~dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvKiRlG~~~~~ 148 (321)
T PRK10415 70 QIAG-SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEH 148 (321)
T ss_pred EECC-CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 9726-999999999998876499989431899989970798365063398999999999973448746999846888522
Q ss_pred -CCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf -6889999999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 195 -LSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 195 -~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
...+.++.+.++|+++++|-++-. .|.-. |.+--+.+..+++. .++|||+.|+|.+..|+
T Consensus 149 ~~~~~~~~~~e~aG~~~itvHgRT~---------~q~y~---------g~adw~~i~~vk~~-~~iPvi~NGDI~~~~da 209 (321)
T PRK10415 149 RNCEEIAQLAEDCGIQALTIHGRTR---------ACLFN---------GEAEYDSIRAVKQK-VSIPVIANGDITDPLKA 209 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEEHHHH---------HHHHC---------CCCCHHHHHHHHHC-CCCCEEECCCCCCHHHH
T ss_conf 4399999999856988999972213---------44316---------99877999999854-79978965891999999
Q ss_pred HHHHH-HCCCEEHHHHHHHH-----H-----HCCC----HHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHH
Q ss_conf 99998-38885233479999-----8-----4146----689999999999999999998089-8578961
Q gi|254781020|r 274 LKSII-LGASLGGLASPFLK-----P-----AMDS----SDAVVAAIESLRKEFIVSMFLLGT-KRVQELY 328 (337)
Q Consensus 274 ~kAla-lGAdaV~iGr~~l~-----~-----~~~G----~~gv~~~l~~l~~el~~~m~~~G~-~~i~el~ 328 (337)
.+++. -|+|.||+||..+. . +..| +..+....+.+.+-++..+.+.|- +.+.++|
T Consensus 210 ~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g~~~~~~~~~e~~~~~~~h~~~~~~~~g~~~~~~~~R 280 (321)
T PRK10415 210 RAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIAR 280 (321)
T ss_pred HHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_conf 99998629999997566536987799999998169979996999999999999999999869075699999
No 54
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.62 E-value=3e-14 Score=102.23 Aligned_cols=206 Identities=16% Similarity=0.172 Sum_probs=110.4
Q ss_pred EEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHH-HHHHHHCCCHHHHHCCC
Q ss_conf 29989-89625686850126633430002569999999980990660520221128668889-99998664012322027
Q gi|254781020|r 47 SVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKS-FELRQYAPHTVLISNLG 124 (337)
Q Consensus 47 st~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 124 (337)
++.+. .+.+..||+.+||.+.+ ...||.+..+.|..-.++...... +...++ .++++.........+..
T Consensus 4 ~~~~~~~~~i~~PIiq~gM~~vs-------~~~LA~Avs~aGglG~ia~~~~~~--e~l~~~i~~~~~~~~~p~~~~~f~ 74 (336)
T COG2070 4 STRFILLLGIKYPIIQGGMAGVS-------TPELAAAVSNAGGLGIIASGGLPA--EQLRAEIRKIRALTDKPFVANNFG 74 (336)
T ss_pred CCHHHHCCCCCCCEECCCCCCCC-------CHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 20223024765665537872348-------699999998278977433167776--889999999998634842013545
Q ss_pred -------CCCCCC-CCCHHHHHH-HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf -------521236-799899998-77650898576253203566520688524307999999998739971785047866
Q gi|254781020|r 125 -------AVQLNY-DFGVQKAHQ-AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGL 195 (337)
Q Consensus 125 -------~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~ 195 (337)
...+.. ...++.... ..+..+......++. ....++++.+++ .+.+++ ..+.
T Consensus 75 ~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g--------------~~~~~~i~~~~~-~g~~v~----~~v~ 135 (336)
T COG2070 75 SAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFG--------------APPAEFVARLKA-AGIKVI----HSVI 135 (336)
T ss_pred CCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCC--------------CCCHHHHHHHHH-CCCEEE----EEEC
T ss_conf 555553110353465534563122564289767971589--------------995889999997-498589----8508
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 88999999976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 196 SSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 196 ~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
+...++++.++|+|++++.+...++. ... ....+.+...++++.+..+.||||+.|||.+|.++..
T Consensus 136 ~~~~A~~~~~~G~d~vI~~g~eAGGH--------~g~------~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~A 201 (336)
T COG2070 136 TVREALKAERAGADAVIAQGAEAGGH--------RGG------VDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAA 201 (336)
T ss_pred CHHHHHHHHHCCCCEEEECCCCCCCC--------CCC------CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 89999999817998899437767786--------899------8877318889999999854897898768688699999
Q ss_pred HHHHCCCEEHHHHHHHHHH
Q ss_conf 9983888523347999984
Q gi|254781020|r 276 SIILGASLGGLASPFLKPA 294 (337)
Q Consensus 276 AlalGAdaV~iGr~~l~~~ 294 (337)
||+|||++|++||.|+..-
T Consensus 202 AlalGA~gVq~GT~Fl~t~ 220 (336)
T COG2070 202 ALALGADGVQMGTRFLATK 220 (336)
T ss_pred HHHHCCHHHHHHHHHHCCC
T ss_conf 9984416855412542140
No 55
>KOG1799 consensus
Probab=99.57 E-value=1.4e-14 Score=104.14 Aligned_cols=272 Identities=14% Similarity=0.072 Sum_probs=168.3
Q ss_pred HHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEEC--------------------CCC-----
Q ss_conf 1017462998989625686850126633430002569999999980990660--------------------520-----
Q gi|254781020|r 41 FDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAV--------------------GSQ----- 95 (337)
Q Consensus 41 ~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~--------------------g~~----- 95 (337)
.++||.+++..|+++.+||.++.--- +... .+-+-+...|.++.. +..
T Consensus 98 l~~ie~~vd~~G~k~~npf~~~s~Pp------~t~~-~lm~raf~~gwg~l~~kt~~ld~~kV~nv~prvar~~t~~~~~ 170 (471)
T KOG1799 98 LKSIEELVDWDGQKPANPFHQKSKPP------PTIA-ELMDRAFPSGWGYLEQKTKILDENKVRNVEPRVARSPTKRSCF 170 (471)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC------CCCH-HHHHHHHHCCCCHHHEEEEECCHHHHEECCCCEEECCCCCCCC
T ss_conf 10144520035765798543478999------9627-8898531035651110102213254220466336446788764
Q ss_pred --------HHH-HCCHHHHHHH----HHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH
Q ss_conf --------221-1286688899----999866401232202752123679989999877650898576253203566520
Q gi|254781020|r 96 --------RVM-FSDHNAIKSF----ELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQP 162 (337)
Q Consensus 96 --------~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
... ..++....|. ++....+....++.. ........|.+.....+..+.|.++.|++|+++....
T Consensus 171 ~p~~~i~~nielIsdr~~e~~L~~f~eLk~~~p~~imIas~--Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~er 248 (471)
T KOG1799 171 IPKRPIPTNIELISDRKAEQYLGTFGELKNVEPVVIMIASE--MCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCER 248 (471)
T ss_pred CCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEHHH--HHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCC
T ss_conf 66887650245644523999999999750148834634678--9885213689986567763443032058898887656
Q ss_pred -CCCC---CHHHHHHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCC--------CCCCCCHHHHCC
Q ss_conf -6885---2430799999999873997178504786688-99999997699799945888--------865100123102
Q gi|254781020|r 163 -NGNT---NFADLSSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRG--------GTSWSRIESHRD 229 (337)
Q Consensus 163 -~~~~---~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~g--------G~~~~~~~~~r~ 229 (337)
-+-. .-.-..+.-.|++.....|++.|..+|+++. +.++.+.+-|+.+|...|.- -+.+..++....
T Consensus 249 gmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~ 328 (471)
T KOG1799 249 GMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGY 328 (471)
T ss_pred CCCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 64101156805667776454421102100356898664543211037665320355768888754441336877664565
Q ss_pred CCCCCCHHHHHCCCCHHHHHHH---HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 3443232443106346889999---9852289879972988888999999983888523347999984146689999999
Q gi|254781020|r 230 LESDIGIVFQDWGIPTPLSLEM---ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIE 306 (337)
Q Consensus 230 ~~~~~~~~~~~~gi~~~~al~~---~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~ 306 (337)
.. ....+...++++ |+.. ++..-+.+|+.+.|||.+|.|.+.+|.||++.||+++.+.-- |. -.++
T Consensus 329 sT---~GG~S~~AvRPI-Al~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~---~~----~~V~ 397 (471)
T KOG1799 329 ST---PGGYSYKAVRPI-ALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMH---GY----GHVK 397 (471)
T ss_pred CC---CCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHC---CC----CHHH
T ss_conf 57---887464220358-8999999999862586123357432312355765077375451677754---86----3599
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf 99999999999808985789614960
Q gi|254781020|r 307 SLRKEFIVSMFLLGTKRVQELYLNTA 332 (337)
Q Consensus 307 ~l~~el~~~m~~~G~~~i~el~~~~~ 332 (337)
.+..||+..|.+-|+.+|+|+++..+
T Consensus 398 ~~Ca~LK~~m~~~~~~ti~~~~G~SL 423 (471)
T KOG1799 398 TLCAELKDFMKQHNFSTIEEFRGHSL 423 (471)
T ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCH
T ss_conf 89988999998717004553167002
No 56
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=99.57 E-value=3.8e-13 Score=95.80 Aligned_cols=253 Identities=13% Similarity=0.076 Sum_probs=153.3
Q ss_pred ECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHC-------CEEECCCCHHHH-CCHHH-HHHHHHHHHC-CCHHH
Q ss_conf 89896256868501266334300025699999999809-------906605202211-28668-8899999866-40123
Q gi|254781020|r 50 FLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTK-------VAMAVGSQRVMF-SDHNA-IKSFELRQYA-PHTVL 119 (337)
Q Consensus 50 i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g-------~~~~~g~~~~~~-~~~~~-~~~~~~~~~~-~~~~~ 119 (337)
|+...|++||+.|||+|.+.. +.=..+.+.+ -.+..++|-... ..... ....++.... ...+.
T Consensus 1 IG~~~L~s~V~~APmAGvtD~-------~FR~l~~~~~~skvGtvagL~~~EMvs~~~~~~~~r~~~~~~~~~~~~~~~~ 73 (336)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDL-------AFRRLVAEYGQSKVGTVAGLTVSEMVSSEAIVYKSRERTKKLLDIDEDETPI 73 (336)
T ss_pred CCCCCCCCCEEECCCCCCCCH-------HHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 987223676564367787671-------7899999852144331241002220045378862355577653212588854
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCC-----CCHHHHHHHHHHHHHHCC---CCEEEEE-
Q ss_conf 2202752123679989999877650898576253203566520688-----524307999999998739---9717850-
Q gi|254781020|r 120 ISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGN-----TNFADLSSKIALLSSAMD---VPLLLKE- 190 (337)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~---~pii~k~- 190 (337)
-.|+... .++.-.+..+-..+..+++.|.+|..||..-....+- .......+.++.+.+..+ .||-||.
T Consensus 74 ~~Ql~Gs--~P~~~aeAAk~i~~~~ga~~IDiN~GCP~~Kitk~~aGsaLl~~p~~~~~iv~~vV~AV~~~~iPVTVK~R 151 (336)
T TIGR00737 74 SVQLFGS--DPDTMAEAAKLINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDAQDIPVTVKIR 151 (336)
T ss_pred EEEEECC--CHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 7876478--82689999999853058988853676548842167635432358689999999999875187665166551
Q ss_pred ----CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCC--CEEEE
Q ss_conf ----478668899999997699799945888865100123102344323244310634688999998-52289--87997
Q gi|254781020|r 191 ----VGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNE--AQFIA 263 (337)
Q Consensus 191 ----v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~--v~Iia 263 (337)
-.+....+.++.+.++|+.++.|-++=- + |.-. |-..-+-+..++ .+... ||||+
T Consensus 152 ~GWD~~h~n~~~~a~~a~~~Ga~Av~lHGRTR---a------Q~Y~---------G~A~wd~I~~vKq~v~~~GeiPVig 213 (336)
T TIGR00737 152 IGWDDAHINAVEAARIAEDAGAQAVTLHGRTR---A------QGYE---------GEANWDIIARVKQAVRKEGEIPVIG 213 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHH---C------CCCC---------CCCCHHHHHHHHHHHHCCCCCCEEC
T ss_conf 56362448889999999872400021110000---0------1578---------8760689999999971687533222
Q ss_pred CCCCCCHHHHHHHHH-HCCCEEHHHHHHHH-----H-----HCCCH----HHHHHHHHHHHHHHHHHHHHCC--CCCHHH
Q ss_conf 298888899999998-38885233479999-----8-----41466----8999999999999999999808--985789
Q gi|254781020|r 264 SGGLRNGVDILKSII-LGASLGGLASPFLK-----P-----AMDSS----DAVVAAIESLRKEFIVSMFLLG--TKRVQE 326 (337)
Q Consensus 264 dGGIr~g~Dv~kAla-lGAdaV~iGr~~l~-----~-----~~~G~----~gv~~~l~~l~~el~~~m~~~G--~~~i~e 326 (337)
.|=|.+..|+-..|- =|||+|||||..|+ . +..|. --+..-+..+...++....+.| .+-+.+
T Consensus 214 NGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~~~i~~yL~tG~~~~~p~~~ek~~~~~~H~~~l~~~yGse~~g~~~ 293 (336)
T TIGR00737 214 NGDIFSPEDAKAMLETTGADGVMIGRGALGNPWLFKQIEQYLTTGKYKPPPTLAEKLDAILRHLQLLADYYGSESKGLRI 293 (336)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 77424678999998637886898500222787589999999726877889888999999999999999983780346889
Q ss_pred HHC
Q ss_conf 614
Q gi|254781020|r 327 LYL 329 (337)
Q Consensus 327 l~~ 329 (337)
.|+
T Consensus 294 ~RK 296 (336)
T TIGR00737 294 ARK 296 (336)
T ss_pred HHH
T ss_conf 999
No 57
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein; InterPro: IPR005991 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria..
Probab=99.55 E-value=7.1e-14 Score=100.05 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 07999999998739971785047866889999999769979994588886510012310234432324431063468899
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
...+.++.++..-..-+++ .||+..++-.+.++++|++.|.|+-..|+.+.. | ...+.|.|+..++
T Consensus 253 ~~~~a~k~~~~ld~~~P~~--aGn~v~a~G~rdl~~aGa~~~kvGvGPGamCtt----r--------m~tGvGrPqfsav 318 (476)
T TIGR01303 253 KMISAVKAVRALDLRVPIV--AGNVVSAEGVRDLVEAGANIIKVGVGPGAMCTT----R--------MMTGVGRPQFSAV 318 (476)
T ss_pred HHHHHHHHHHHHCCCCCEE--ECCEEECCCHHHHHHCCCCEEEECCCCCCHHHH----H--------HHHCCCCCHHHHH
T ss_conf 9999999998604558654--242241100488874476189864688602344----4--------4305787137899
Q ss_pred HHHHHHCC--CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH----------------------------------
Q ss_conf 99985228--987997298888899999998388852334799998----------------------------------
Q gi|254781020|r 250 EMARPYCN--EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP---------------------------------- 293 (337)
Q Consensus 250 ~~~~~~~~--~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~---------------------------------- 293 (337)
++|++... .-.|++|||||.+.||+-||+.||+.||+|++|-..
T Consensus 319 leCa~~a~~~G~h~WadGG~r~PrdvalalaaGasnvm~GsWf~GtyesPGdl~~~~~~~~ykes~Gmas~rav~~r~~~ 398 (476)
T TIGR01303 319 LECAAEARKLGKHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLRRDADGRAYKESFGMASKRAVEARTSK 398 (476)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 89889998607726406886763777776650643024411003554785101110047401345314568888642000
Q ss_pred -----------HCC-----------CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCC
Q ss_conf -----------414-----------668999999999999999999808985789614960
Q gi|254781020|r 294 -----------AMD-----------SSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTA 332 (337)
Q Consensus 294 -----------~~~-----------G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~ 332 (337)
..+ -..||+++++.+....|+...|.|..+|++|..+..
T Consensus 399 ~~~~~~ar~alfeeGist~r~~~d~~~~Gvedl~d~i~~Gvrs~~ty~Ga~~~~~~~e~a~ 459 (476)
T TIGR01303 399 EEAFDRARKALFEEGISTSRMFLDPARGGVEDLIDAIISGVRSSCTYAGADSLEELTERAV 459 (476)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCHHHHEEECCHHHHHHHHHCEE
T ss_conf 1068899998875164212256505778778999987502123001203356886520114
No 58
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=8e-12 Score=87.98 Aligned_cols=252 Identities=14% Similarity=0.082 Sum_probs=147.8
Q ss_pred ECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCC-EEECCCCHHHH--CCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 898962568685012663343000256999999998099-06605202211--286688899999866401232202752
Q gi|254781020|r 50 FLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKV-AMAVGSQRVMF--SDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 50 i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~-~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
+....++.++++|||+|.+. ...-..+.+.|. ..+.+++-... ..................++..|+...
T Consensus 4 ~~~~~~~~~~~lAPM~gvtd-------~~fR~l~~~~ga~~l~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gs 76 (323)
T COG0042 4 IGLIELRNRVILAPMAGVTD-------LPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGS 76 (323)
T ss_pred CCCCCCCCCEEEECCCCCCC-------HHHHHHHHHHCCCCEEEEEEEECCHHHCCCHHHHHCCCCCCCCCCEEEEECCC
T ss_conf 45555678778834889866-------89999999958875289740453045527700443056456678779997389
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCC-CCEEEEECCCCCC----
Q ss_conf 1236799899998776508985762532035665206885-----24307999999998739-9717850478668----
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMD-VPLLLKEVGCGLS---- 196 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~-~pii~k~v~~~~~---- 196 (337)
.. + ...+..+..+..+++.+.+|..||+..+...+-. ....+.+.++.+++..+ .|+-+|.=....+
T Consensus 77 dp--~-~laeaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~ 153 (323)
T COG0042 77 DP--E-LLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDIL 153 (323)
T ss_pred CH--H-HHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHCC
T ss_conf 98--9-99999999986699989876899928980898447771798999999999998538887499985787800200
Q ss_pred -HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf -8999999976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 197 -SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 197 -~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
.+.++.+.++|++.++|-++=- . .... +-.--+.+..+++...++|||+.|+|++..|+.+
T Consensus 154 ~~~ia~~~~~~G~~~ltVHgRtr----------~-~~y~-------~~a~~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~ 215 (323)
T COG0042 154 ALEIARILEDAGADALTVHGRTR----------A-QGYL-------GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKE 215 (323)
T ss_pred HHHHHHHHHHCCCCEEEEECCCH----------H-HCCC-------CCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
T ss_conf 99999999967987899955667----------6-4689-------8648799999998679975985799499999999
Q ss_pred HHHH-CCCEEHHHHHHHH-----H----HCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 9983-8885233479999-----8----41466---8999999999999999999808985789614
Q gi|254781020|r 276 SIIL-GASLGGLASPFLK-----P----AMDSS---DAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 276 Alal-GAdaV~iGr~~l~-----~----~~~G~---~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
.|.- |+|.||+||..+. . ...|. ......++.+..-++....+.|...+..+++
T Consensus 216 ~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~rk 282 (323)
T COG0042 216 MLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRK 282 (323)
T ss_pred HHHHHCCCEEEECHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9984189879974353169557553355306887887799999999999999998624106999999
No 59
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.39 E-value=8.1e-11 Score=82.06 Aligned_cols=122 Identities=19% Similarity=0.111 Sum_probs=85.1
Q ss_pred CCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEEC-CC-CCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8985762532035665206885-----2430799999999873997178504-78-668899999997699799945888
Q gi|254781020|r 145 GADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKEV-GC-GLSSMDIELGLKSGIRYFDIAGRG 217 (337)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~v-~~-~~~~~~~~~a~~aGad~i~v~~~g 217 (337)
..+.+.++..||...+...+.. +.....+.++.+++ .+.|+-+|.= |. ....+.++.+.++|++++.+....
T Consensus 97 ~~d~IDiN~GCP~~kV~~~g~GsaLl~dp~~~~~iv~avk~-~~~PVtvKiR~G~d~~~~~~a~~~e~aG~~~l~v~~~~ 175 (233)
T cd02911 97 NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMD 175 (233)
T ss_pred CCCEEEEECCCCCHHHCCCCCHHHHCCCHHHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 69999997999928983797537773898999999999985-38984279856999888999999998396079943207
Q ss_pred CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 865100123102344323244310634688999998522898799729888889999999838885233479999
Q gi|254781020|r 218 GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 218 G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
.... ..+..++++..++|||+.|.|.+..|+.+.+.-|||+|||||..|.
T Consensus 176 ~~~~-------------------------ad~~~I~~~~~~i~VigNGDI~s~eda~~~~~~G~DgVMIgRgAL~ 225 (233)
T cd02911 176 PGNH-------------------------ADLKKIRDISTELFIIGNNSVTTIESAKEMFSYGADMVSVARASLP 225 (233)
T ss_pred CCCH-------------------------HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECHHHCC
T ss_conf 7850-------------------------8999999863798799808969999999999859999997387556
No 60
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.39 E-value=7.5e-11 Score=82.27 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=122.0
Q ss_pred CEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHH-H-CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHH
Q ss_conf 86850126633430002569999999980990660520221-1-286688899999866401232202752123679989
Q gi|254781020|r 58 PLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVM-F-SDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQ 135 (337)
Q Consensus 58 Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (337)
++++|||.+.+.. .+-..+.+.|.-.+.+++-.. . ..........+.......++..|+...... ...
T Consensus 1 k~~lAPM~g~td~-------~fR~l~~~~g~~~~~TEmv~a~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~---~~~ 70 (231)
T cd02801 1 KLILAPMVGVTDL-------PFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPE---TLA 70 (231)
T ss_pred CEEEECCCCCCCH-------HHHHHHHHHCCCEEEECCEEEHHHHCCCHHHHHHHCCCCCCCEEEEEECCCCHH---HHH
T ss_conf 9898378998479-------999999998939899798998776538887898724486678079987589899---999
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEE---CCCC-CCHHHHHHHHHC
Q ss_conf 9998776508985762532035665206885-----243079999999987399717850---4786-688999999976
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKE---VGCG-LSSMDIELGLKS 206 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~---v~~~-~~~~~~~~a~~a 206 (337)
...+.....+++.+.++..||+..+...+-. +.+.+.+.++.+++..+.|+.+|. ..+. ...+.++.+.++
T Consensus 71 ~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvKiRlg~~~~~~~~~~~~~l~~~ 150 (231)
T cd02801 71 EAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA 150 (231)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 99998875399999983899969970898307876297899999999997569947999970778634799999999976
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH-CCCEEH
Q ss_conf 9979994588886510012310234432324431063468899999852289879972988888999999983-888523
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIIL-GASLGG 285 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlal-GAdaV~ 285 (337)
|++.+.|-++-. .+ ... +..--+.+..+++ ..++|||+.|+|.+..|+.+.+.. |+|.||
T Consensus 151 G~~~ltvH~Rt~---------~q--~~~-------~~a~~e~i~~~~~-~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (231)
T cd02801 151 GASALTVHGRTR---------EQ--RYS-------GPADWDYIAEIKE-AVSIPVIANGDIFSLEDALRCLEQTGVDGVM 211 (231)
T ss_pred CCCEEEEECCCH---------HH--CCC-------CCCCHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHCCCEEE
T ss_conf 998999835614---------41--467-------7622699999986-5997799838909999999999850999999
Q ss_pred HHHHHHH
Q ss_conf 3479999
Q gi|254781020|r 286 LASPFLK 292 (337)
Q Consensus 286 iGr~~l~ 292 (337)
+||..+.
T Consensus 212 igRgal~ 218 (231)
T cd02801 212 IGRGALG 218 (231)
T ss_pred ECHHHHH
T ss_conf 8788876
No 61
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.37 E-value=1.2e-10 Score=81.12 Aligned_cols=196 Identities=21% Similarity=0.185 Sum_probs=113.9
Q ss_pred EEEECHHHHHHHHCHHHHHHHHHHHHHHCC-EEECCCCHHHHCCHHHHH--HHHHHHHCCCHHHHHCCCCCCCCCCCCHH
Q ss_conf 685012663343000256999999998099-066052022112866888--99999866401232202752123679989
Q gi|254781020|r 59 LLISSMTGGNNKMIERINRNLAIAAEKTKV-AMAVGSQRVMFSDHNAIK--SFELRQYAPHTVLISNLGAVQLNYDFGVQ 135 (337)
Q Consensus 59 v~iapmsgg~~~~~~~~~~~lA~aa~~~g~-~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (337)
|+.++|++... ....++++++.+.|. ...++............. ..+......+.+...+......... .+
T Consensus 1 v~~~~~~~~~~----~~~~E~a~~~~~aGa~~i~~~~~~~~~~~~~~~~~~~i~~~~~~t~~P~~v~~~~~~~~~~--~~ 74 (200)
T cd04722 1 VILALLAGGPS----GDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAA--VD 74 (200)
T ss_pred CEEEEECCCCC----CCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CH
T ss_conf 95776328998----7899999999868873688648879824616999999999997079987998420566667--75
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99987765089857625320356652068852430799999999873-99717850478668899999997699799945
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
...+.....+.+.+.++..++.. .....+.++++++.+ +.+++.+... ........+.+.|+|.+.+.
T Consensus 75 ~~~~~~~~~g~d~v~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~vi~~~~~--~~~~~~~~a~~~g~~~v~~~ 143 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYL---------AREDLELIRELREAVPDVKVVVKLSP--TGELAAAAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHHHCCCCEEEECCCCCCC---------CCCHHHHHHHHHHHCCCCEEEEECCC--CCHHHHHHHHHCCCCEEEEC
T ss_conf 99999998399989978999654---------30068999999984489649996899--99999999998099799970
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 88886510012310234432324431063468899999852289879972988888999999983888523347
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr 288 (337)
+.++++...... .+....+..+ ....++||+++|||.++.|+.+++.+|||.|.+||
T Consensus 144 ~~~~~~~~~~~~----------------~~~~~~~~~~-~~~~~ipvi~~gGi~~~~~~~~~~~~gAdgv~vGs 200 (200)
T cd04722 144 NGGGGGGGRDAV----------------PIADLLLILA-KRGSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred CCCCCCCCCCCC----------------CHHHHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 874678887666----------------1168999999-98579998997587999999999985998898188
No 62
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.33 E-value=2.5e-10 Score=79.18 Aligned_cols=213 Identities=12% Similarity=0.074 Sum_probs=121.5
Q ss_pred CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCE-EECCCCH----HHHCCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 89625686850126633430002569999999980990-6605202----211286688899999866401232202752
Q gi|254781020|r 52 GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVA-MAVGSQR----VMFSDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 52 G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~-~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
-..++.+|.+|||.+.+.... ..+ ++..+-. +...++- ....+. .. .+.....+.++..|++..
T Consensus 6 ~~~~~~~~~lAPM~gvTD~~f----R~l---~R~~~~~~l~yTEMvsa~al~~~~~---~~-~l~~~~~E~Pv~vQl~G~ 74 (333)
T PRK11815 6 PKILPRRFSVAPMMDWTDRHC----RYF---HRLLSRHALLYTEMVTTGAIIHGDR---ER-LLAFDPEEHPVALQLGGS 74 (333)
T ss_pred CCCCCCCEEEECCCCCCCHHH----HHH---HHHHCCCCEEEECCEEEHHHHCCCH---HH-HHHCCCCCCCEEEEECCC
T ss_conf 611688558637799807999----999---9997799779869985146661798---88-850698779879997479
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCC-----CCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCC--
Q ss_conf 123679989999877650898576253203566520688-----5243079999999987399717850---478668--
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGN-----TNFADLSSKIALLSSAMDVPLLLKE---VGCGLS-- 196 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~~~pii~k~---v~~~~~-- 196 (337)
... ......+..+..+++.+.++..||...+...+- .+...+.+.++.+++.++.|+-+|. +-...+
T Consensus 75 dp~---~la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK~RlG~d~~d~~~ 151 (333)
T PRK11815 75 DPA---DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYE 151 (333)
T ss_pred CHH---HHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
T ss_conf 999---99999999987398853523899868873278017870799999999999987348853578631677775289
Q ss_pred --HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH--HHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf --89999999769979994588886510012310234432324431063468--89999985228987997298888899
Q gi|254781020|r 197 --SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP--LSLEMARPYCNEAQFIASGGLRNGVD 272 (337)
Q Consensus 197 --~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~--~al~~~~~~~~~v~IiadGGIr~g~D 272 (337)
.+.++.+.++|++.++|-++-. .+.+. +......+|++ +.+..+++...++|||+.|||.+..|
T Consensus 152 ~l~~f~~~~~~aG~~~i~vH~R~a----------~l~Gl--spk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s~~~ 219 (333)
T PRK11815 152 FLCDFVDTVAEAGCDRFIVHARKA----------WLKGL--SPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEE 219 (333)
T ss_pred HHHHHHHHHHHCCCCEEEEEEHHH----------HHCCC--CHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHH
T ss_conf 999999999975998899960278----------77267--877750587304899999997667871884599699999
Q ss_pred HHHHHHHCCCEEHHHHHHH
Q ss_conf 9999983888523347999
Q gi|254781020|r 273 ILKSIILGASLGGLASPFL 291 (337)
Q Consensus 273 v~kAlalGAdaV~iGr~~l 291 (337)
+.+.|-- .|.||+||..+
T Consensus 220 ~~~~l~~-~DGVMiGRga~ 237 (333)
T PRK11815 220 AKEHLQH-VDGVMIGRAAY 237 (333)
T ss_pred HHHHHHC-CCEEEEHHHHH
T ss_conf 9999855-99621148675
No 63
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.30 E-value=8e-11 Score=82.10 Aligned_cols=194 Identities=13% Similarity=0.048 Sum_probs=101.4
Q ss_pred CCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHH-HHH-HHHHHHHCCCHHHHHCCCCCCCCCCCC
Q ss_conf 568685012663343000256999999998099066052022112866-888-999998664012322027521236799
Q gi|254781020|r 56 SFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHN-AIK-SFELRQYAPHTVLISNLGAVQLNYDFG 133 (337)
Q Consensus 56 ~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (337)
+.||+.++|+..+.. ..||.+.++.|....++.. ...++ ..+ ..+.++...+.+.-.|+... .....
T Consensus 2 rYPIiQGgMa~vsd~------a~LAAAVSnAGGLGiIa~~---~~~~e~lr~eI~k~r~~ltdkPFGVNi~~~--~p~~~ 70 (320)
T cd04743 2 RYPIVQGPMTRVSDV------AEFAVAVAEGGGLPFIALA---LMRGEQVKALLEETAELLGDKPWGVGILGF--VDTEL 70 (320)
T ss_pred CCCEECCCCHHHCCC------HHHHHHHHCCCCHHHHCCC---CCCHHHHHHHHHHHHHHHCCCCCEEEEEEE--CCCCC
T ss_conf 888766761142370------8899999818747774337---899899999999999982599844557513--88722
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
.+.................. +.+ ....+++ ..+.++++ .+.++..++++.++|+|+|++
T Consensus 71 ~~~~~~vi~e~kv~vv~~ag----------G~P------~~~~~Lk-~aGikvi~----~V~Sv~lAk~~~~~GaDavIa 129 (320)
T cd04743 71 RAAQLAVVRAIKPTFALIAG----------GRP------DQARALE-AIGISTYL----HVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred HHHHHHHHHCCCCCEEEECC----------CCC------HHHHHHH-HCCCEEEE----ECCCHHHHHHHHHCCCCEEEE
T ss_conf 57888888616998999568----------890------7879999-86997999----779999999999849999999
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHHHCCC--------
Q ss_conf 588886510012310234432324431063468-899999--852289879972988888999999983888--------
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMA--RPYCNEAQFIASGGLRNGVDILKSIILGAS-------- 282 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~--~~~~~~v~IiadGGIr~g~Dv~kAlalGAd-------- 282 (337)
.|+.+++.. . ..++.. =+|++ +++... ..-..+||||+.|||.+|.-++-+++|||.
T Consensus 130 EG~EaGGHi--------G-~~~Tm~---Lvpqvvdav~~~~~~~~~~~IPViaAGGI~DGRg~aaa~aLgA~~a~~g~~~ 197 (320)
T cd04743 130 EGRECGGHV--------G-PRSSFV---LWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKV 197 (320)
T ss_pred ECCCCCCCC--------C-CCCHHH---HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCCC
T ss_conf 574576776--------7-530134---0598988986035665567874899767456189999998388422315622
Q ss_pred EEHHHHHHHHH
Q ss_conf 52334799998
Q gi|254781020|r 283 LGGLASPFLKP 293 (337)
Q Consensus 283 aV~iGr~~l~~ 293 (337)
.|++||.||..
T Consensus 198 GVqmGTrfl~t 208 (320)
T cd04743 198 GVLMGTAYLFT 208 (320)
T ss_pred EEEEECHHHCC
T ss_conf 27860441101
No 64
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=99.28 E-value=3.2e-10 Score=78.51 Aligned_cols=204 Identities=15% Similarity=0.119 Sum_probs=120.0
Q ss_pred EEECHHHHHHHHCHHHHHHHHHHHHHHCCE-EECCCCHH-HHCCHHHHHHHH-HHHHCCCHHHHHCCCCCCCCCCCCHHH
Q ss_conf 850126633430002569999999980990-66052022-112866888999-998664012322027521236799899
Q gi|254781020|r 60 LISSMTGGNNKMIERINRNLAIAAEKTKVA-MAVGSQRV-MFSDHNAIKSFE-LRQYAPHTVLISNLGAVQLNYDFGVQK 136 (337)
Q Consensus 60 ~iapmsgg~~~~~~~~~~~lA~aa~~~g~~-~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (337)
++|||.+.+. ..+-..+.+.|.. .+.+++-. ............ +.......++..|+..... .....
T Consensus 1 iLAPM~g~td-------~~fR~l~~~~g~~~l~~TEmv~a~~l~~~~~~~~~~~~~~~~e~P~~~Ql~G~dp---~~~~~ 70 (309)
T pfam01207 1 LLAPMAGVTD-------LPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQLGGSDP---ALLAE 70 (309)
T ss_pred CCCCCCCCCC-------HHHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCCCEEEEEECCCH---HHHHH
T ss_conf 9278899907-------9999999997959299979899713543887588742007678972899936999---99999
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEE-CCC----CCCHHHHHHHHHC
Q ss_conf 998776508985762532035665206885-----243079999999987399717850-478----6688999999976
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKE-VGC----GLSSMDIELGLKS 206 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~-v~~----~~~~~~~~~a~~a 206 (337)
..+..+..+++.+.++..||...+...+.. ....+.+.++.+++.++.|+-+|. +|- ....+.++.+.++
T Consensus 71 aa~~~~~~g~d~IDlN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~~~~~~~~~~~~l~~~ 150 (309)
T pfam01207 71 AAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDA 150 (309)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 99998863999896518999999878997762541778999999999975588546754337887638899999999846
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCCEEH
Q ss_conf 997999458888651001231023443232443106346889999985228987997298888899999998-3888523
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSII-LGASLGG 285 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla-lGAdaV~ 285 (337)
|+++|+|-++-- .|.-.. ..--+.+..+++. ..+|||+.|+|.+..|+.+.+. -|+|.||
T Consensus 151 G~~~itvH~Rt~---------~q~~~g---------~a~w~~i~~~k~~-~~ipvi~NGdi~~~~d~~~~l~~tg~dgvM 211 (309)
T pfam01207 151 GAQALTVHGRTR---------AQNYEG---------PADWDAIKQVKQA-VSIPVIANGDITDAEDAQRCLSYTGADGVM 211 (309)
T ss_pred CCCEEEEECCCH---------HHCCCC---------CCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHCCCEEE
T ss_conf 888799967632---------402678---------6541899999985-898289808948899999998610999999
Q ss_pred HHHHHHH
Q ss_conf 3479999
Q gi|254781020|r 286 LASPFLK 292 (337)
Q Consensus 286 iGr~~l~ 292 (337)
+||..+.
T Consensus 212 igRga~~ 218 (309)
T pfam01207 212 IGRGALG 218 (309)
T ss_pred ECHHHHH
T ss_conf 8489774
No 65
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.99 E-value=1.1e-07 Score=63.59 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHC--CCCEEEEE-CCC---CCCHHHHHHHHHC
Q ss_conf 98776508985762532035665206885-----2430799999999873--99717850-478---6688999999976
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAM--DVPLLLKE-VGC---GLSSMDIELGLKS 206 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~--~~pii~k~-v~~---~~~~~~~~~a~~a 206 (337)
.......+++.+.++..||...+...+-. +...+.+.++.+++.. +.|+-+|. .|. ....+.++.+.++
T Consensus 81 A~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~~~~e~~~~~~~~ 160 (312)
T PRK10550 81 AARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGDRKFEIADAVQQA 160 (312)
T ss_pred HHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99999769996625479997896689926853289779999999999745878995477535899863199999999973
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC-HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCCEE
Q ss_conf 99799945888865100123102344323244310634-6889999985228987997298888899999998-388852
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP-TPLSLEMARPYCNEAQFIASGGLRNGVDILKSII-LGASLG 284 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~-~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla-lGAdaV 284 (337)
|++.|+|-++-- .|.-. |-+ --+.+..+++. -++|||+.|+|++..|+.+.+. -|+|.|
T Consensus 161 G~~~ltvH~RT~---------~q~y~---------~~~~dw~~i~~~~~~-~~iPvi~NGdI~s~~d~~~~~~~tg~dgv 221 (312)
T PRK10550 161 GATELVVHGRTK---------EQGYR---------AEHIDWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAISGCDAV 221 (312)
T ss_pred CCCEEEEECCCH---------HHCCC---------CCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHCCCEE
T ss_conf 998799905526---------53589---------983489999999974-89989970795999999999871489999
Q ss_pred HHHHHHH
Q ss_conf 3347999
Q gi|254781020|r 285 GLASPFL 291 (337)
Q Consensus 285 ~iGr~~l 291 (337)
|+||..+
T Consensus 222 MiGRgal 228 (312)
T PRK10550 222 MIGRGAL 228 (312)
T ss_pred EECHHHH
T ss_conf 9658553
No 66
>KOG2335 consensus
Probab=98.98 E-value=5.1e-08 Score=65.60 Aligned_cols=205 Identities=16% Similarity=0.143 Sum_probs=119.4
Q ss_pred EEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHH--HCC-HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHH
Q ss_conf 850126633430002569999999980990660520221--128-66888999998664012322027521236799899
Q gi|254781020|r 60 LISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVM--FSD-HNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQK 136 (337)
Q Consensus 60 ~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (337)
++|||-.-+. .+.-..++.-|.-.+...+-.. +.+ +.... .....-..+.+++.+++..... ....
T Consensus 22 i~APMvd~S~-------l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~-~~~st~~~D~PLIvQf~~ndp~---~ll~ 90 (358)
T KOG2335 22 IVAPMVDYSE-------LAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRD-SELSTSPEDRPLIVQFGGNDPE---NLLK 90 (358)
T ss_pred CCCCCCCCCH-------HHHHHHHHHHCCCEEECHHHHHHHHHCCCCCHH-HHCCCCCCCCCEEEEECCCCHH---HHHH
T ss_conf 5477244627-------899999999687657224788888741742100-0113687778669997479989---9999
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEECC---CCCCHHHHHHHHHCCC
Q ss_conf 998776508985762532035665206885-----24307999999998739971785047---8668899999997699
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKEVG---CGLSSMDIELGLKSGI 208 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~v~---~~~~~~~~~~a~~aGa 208 (337)
..+.+.... |++.++..|||......+-. ..+-+.+.++.++..++.|+-+|.=- ...+.+-++.+.++|+
T Consensus 91 Aa~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~ 169 (358)
T KOG2335 91 AARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGV 169 (358)
T ss_pred HHHHHHHHC-CCCCCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHCCC
T ss_conf 999865334-7204158998788843772600023889999999999852599869999855767878999999986798
Q ss_pred CEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCCEEHHH
Q ss_conf 7999458888651001231023443232443106346889999985228987997298888899999998-388852334
Q gi|254781020|r 209 RYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSII-LGASLGGLA 287 (337)
Q Consensus 209 d~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla-lGAdaV~iG 287 (337)
+.+.|-++- |...+. -.+..-.+++..+++.-.++|||+.|+|.+-.|+...+- -|||.||+|
T Consensus 170 ~~ltVHGRt----------r~~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~a 233 (358)
T KOG2335 170 SLLTVHGRT----------REQKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSA 233 (358)
T ss_pred CEEEEECCC----------HHHCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 689993655----------776288------8887677999999974767708950885768999999997587468860
Q ss_pred HHHHH
Q ss_conf 79999
Q gi|254781020|r 288 SPFLK 292 (337)
Q Consensus 288 r~~l~ 292 (337)
|..|+
T Consensus 234 rglL~ 238 (358)
T KOG2335 234 RGLLY 238 (358)
T ss_pred CHHHC
T ss_conf 00003
No 67
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.81 E-value=5.5e-07 Score=59.49 Aligned_cols=205 Identities=17% Similarity=0.107 Sum_probs=108.7
Q ss_pred EECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCC
Q ss_conf 98989625686850126633430002569999999980990660520221128668889999986640123220275212
Q gi|254781020|r 49 EFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQL 128 (337)
Q Consensus 49 ~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (337)
+|.|++|++-+++.- +.+... ..+..+-...|.-.++-.....-......+.+.-.........+.|...
T Consensus 2 ~Igg~~f~SRLilGT-----gky~s~--~~~~~ai~aSgaeivTVAlRR~~~~~~~~~~~l~~i~~~~~~~LPNTAG--- 71 (248)
T cd04728 2 TIGGKTFSSRLLLGT-----GKYPSP--AIMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTLLPNTAG--- 71 (248)
T ss_pred EECCEEEECCEEEEC-----CCCCCH--HHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCEECCCCCC---
T ss_conf 789988774337864-----899999--9999999996897699998630578888526898752338668765401---
Q ss_pred CCCCCHHHH----HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 367998999----9877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 129 NYDFGVQKA----HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 129 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
-.+.++. +-+++..+.+-+.+-+-... ..-..+..+.++..+...+.-+.|- .=...++..++++.
T Consensus 72 --c~ta~EAvr~A~laRE~~~t~~IKLEVi~D~-------~~LlPD~~eTl~Aae~Lv~~GF~Vl-pY~~~D~v~akrLe 141 (248)
T cd04728 72 --CRTAEEAVRTARLAREALGTDWIKLEVIGDD-------KTLLPDPIETLKAAEILVKEGFTVL-PYCTDDPVLAKRLE 141 (248)
T ss_pred --CCCHHHHHHHHHHHHHHHCCCEEEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHH
T ss_conf --1679999999999999848986999981797-------6779886899999999998899897-86788999999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
++|+.++-==+. ++.++.|+.....|..+.+-. ++|||.|-||-+..|++.||=||||+|
T Consensus 142 ~~Gc~avMPlgs-------------------PIGSg~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~Aa~aMElG~daV 201 (248)
T cd04728 142 DAGCAAVMPLGS-------------------PIGSGQGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQAMELGADAV 201 (248)
T ss_pred HCCCEEEEECCC-------------------CCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 749534520456-------------------434798879999999999847-998898479997567899987265533
Q ss_pred HHHHHHHHH
Q ss_conf 334799998
Q gi|254781020|r 285 GLASPFLKP 293 (337)
Q Consensus 285 ~iGr~~l~~ 293 (337)
.+-|++-.+
T Consensus 202 L~NTAIA~A 210 (248)
T cd04728 202 LLNTAIAKA 210 (248)
T ss_pred EHHHHHHCC
T ss_conf 454687716
No 68
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.80 E-value=3.2e-07 Score=60.87 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=98.4
Q ss_pred HHHHHHCCCEEEECCCCHHH---HHHH-CC---CCC-------HHHHHHHHHHHHHHCC------CCEEEEECC-----C
Q ss_conf 87765089857625320356---6520-68---852-------4307999999998739------971785047-----8
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQE---IIQP-NG---NTN-------FADLSSKIALLSSAMD------VPLLLKEVG-----C 193 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~---~~~-------~~~~~~~i~~l~~~~~------~pii~k~v~-----~ 193 (337)
+.....|.|++++|..+..- -.++ .+ |.. .+-..+.++.+|+.++ .++.++..+ .
T Consensus 151 ~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~~e~~~~ 230 (353)
T cd04735 151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEP 230 (353)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHCCCC
T ss_conf 99998399989975465759998539988998473679889998899999999999854005897336751586541479
Q ss_pred CCCH----HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 6688----999999976997999458888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 194 GLSS----MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 194 ~~~~----~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
..+. +.++.+.++|+|.+.||..+-..... .. .....+....+. .....++|||+.|+|++
T Consensus 231 G~~~~e~~~~~~~l~~~gvD~l~vs~g~~~~~~~------~~-------~~~~~~~~~~~~--~~~~~~iPvi~~G~i~~ 295 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSR------RG-------RDDNQTIMELVK--ERIAGRLPLIAVGSINT 295 (353)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC------CC-------CCCCHHHHHHHH--HHHCCCCCEEEECCCCC
T ss_conf 9999999999999984799889960377667776------67-------775355899999--99678980999899998
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89999999838885233479999841466899999999999999999980898578961
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
..++-++|.-|||+|.+||+++. -++=+.++.+.=.+|+|.+. .|.+++.|+
T Consensus 296 ~~~ae~~l~~gaD~V~~gR~lia----dPd~~~K~~~Gr~~eIr~ci---~~~~~~~~~ 347 (353)
T cd04735 296 PDDALEALETGADLVAIGRGLLV----DPDWVEKIKEGREDEINLEI---DPDDLEELK 347 (353)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH----CHHHHHHHHCCCHHHHHHCC---CHHHHHHCC
T ss_conf 99999999869982998699997----93199999858952303338---976898647
No 69
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.79 E-value=6.9e-07 Score=58.91 Aligned_cols=204 Identities=17% Similarity=0.148 Sum_probs=108.4
Q ss_pred EEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHH-HCCHHHHHHHHHHHHCCCHHHHHCCCCC
Q ss_conf 998989625686850126633430002569999999980990660520221-1286688899999866401232202752
Q gi|254781020|r 48 VEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVM-FSDHNAIKSFELRQYAPHTVLISNLGAV 126 (337)
Q Consensus 48 t~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (337)
-+|.|++|++-+++.- ..+... ..+..+....|.-.++-..... ..+......+... .......+.|...
T Consensus 2 l~I~~~~f~SRLilGT-----gky~s~--~~~~~ai~aSg~eivTVAlRR~~~~~~~~~~~l~~i-~~~~~~lLPNTAG- 72 (256)
T PRK00208 2 LTIAGKTFSSRLLLGT-----GKYPSP--EVMQEAIEASGAEIVTVALRRVNLGDPGGDNLLDLL-DPLGVTLLPNTAG- 72 (256)
T ss_pred CEECCEEEECCEEEEC-----CCCCCH--HHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHH-CCCCCEECCCCCC-
T ss_conf 1899999774347864-----899999--999999999689779999864247789850588874-3158567666403-
Q ss_pred CCCCCCCHHHH----HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 12367998999----98776508985762532035665206885243079999999987399717850478668899999
Q gi|254781020|r 127 QLNYDFGVQKA----HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIEL 202 (337)
Q Consensus 127 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~ 202 (337)
-.+.++. +-+++..+.+-+.+-+-... ..-..+..+.++..+...+.-+.|- .=...++..+++
T Consensus 73 ----c~ta~EAVr~A~laRE~~~tnwIKLEVi~D~-------~~LlPD~~etl~Aae~Lv~eGF~Vl-pY~~~D~v~akr 140 (256)
T PRK00208 73 ----CRTAEEAVRTARLAREALGTDWIKLEVIGDD-------KTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPVLAKR 140 (256)
T ss_pred ----CCCHHHHHHHHHHHHHHHCCCEEEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHH
T ss_conf ----2679999999999999848986999981797-------6779886899999999998899897-867889899999
Q ss_pred HHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 99769979994588886510012310234432324431063468899999852289879972988888999999983888
Q gi|254781020|r 203 GLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGAS 282 (337)
Q Consensus 203 a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAd 282 (337)
+.++|+.+|-==+. ++.++.|+.....|..+.+-. ++|||.|-||-+..|+++||=||||
T Consensus 141 Le~~Gc~avMPlgs-------------------PIGSg~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~Aa~AMElG~D 200 (256)
T PRK00208 141 LEEAGCAAVMPLGA-------------------PIGSGLGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAMELGAD 200 (256)
T ss_pred HHHCCCEEEEECCC-------------------CCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 99749534520456-------------------434798879999999999867-9988985788976678999862554
Q ss_pred EEHHHHHHHH
Q ss_conf 5233479999
Q gi|254781020|r 283 LGGLASPFLK 292 (337)
Q Consensus 283 aV~iGr~~l~ 292 (337)
+|.+-|++-.
T Consensus 201 aVL~NTAIA~ 210 (256)
T PRK00208 201 AVLLNTAIAV 210 (256)
T ss_pred EEEHHHHHHC
T ss_conf 3235568772
No 70
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.78 E-value=4.3e-07 Score=60.11 Aligned_cols=154 Identities=16% Similarity=0.149 Sum_probs=92.7
Q ss_pred HHHHHHCCCEEEECCCCHHHH---HH----HCCCCC-------HHHHHHHHHHHHHHCCCCEEEEECCC-----CCCH--
Q ss_conf 877650898576253203566---52----068852-------43079999999987399717850478-----6688--
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQEI---IQ----PNGNTN-------FADLSSKIALLSSAMDVPLLLKEVGC-----GLSS-- 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~-------~~~~~~~i~~l~~~~~~pii~k~v~~-----~~~~-- 197 (337)
+.....|.|++++|..+..-. .+ ...|.. .+-..+.++.+|+.++.|++++..++ ..+.
T Consensus 149 ~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~YGGs~eNR~Rf~lEii~aVr~~~~~~v~vRis~~d~~~gG~~~~d 228 (337)
T PRK13523 149 KRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPDGLTVQD 228 (337)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 99998499989981354358998479232489585588889998899999999998658863999336555789989899
Q ss_pred --HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf --999999976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 198 --MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 198 --~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
+.++.+.++|+|.+.||...-.. . ..... .+.-++.. ..+++. .++||++.|+|.+..++-+
T Consensus 229 ~~~~~~~l~~~GvD~i~vs~G~~~~-~------~~~~~-----~g~~~~~a---~~ik~~-~~ipvi~vG~i~~~~~ae~ 292 (337)
T PRK13523 229 YVQYAKWMKEQGVDLIDVSSGAVVP-A------RIDVY-----PGYQVPFA---EHIKEH-ANIATGAVGLITTGAQAEE 292 (337)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC-C------CCCCC-----CCCCHHHH---HHHHHH-CCCCEEEECCCCCHHHHHH
T ss_conf 9999999997499989957885547-7------67778-----75334899---999987-6970999838699999999
Q ss_pred HHHHC-CCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99838-88523347999984146689999999999999
Q gi|254781020|r 276 SIILG-ASLGGLASPFLKPAMDSSDAVVAAIESLRKEF 312 (337)
Q Consensus 276 AlalG-AdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el 312 (337)
+|.-| ||+|++||+++. -++=+.+.-+.+..|+
T Consensus 293 ~l~~G~aD~V~~gR~~ia----dPd~p~kaa~~~~~ei 326 (337)
T PRK13523 293 ILNNNRADLIFIGRELLR----NPYFPRIAANELGFEI 326 (337)
T ss_pred HHHCCCCCHHHHHHHHHH----CCCHHHHHHHHCCCCC
T ss_conf 998799479998999998----9109999997669999
No 71
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=98.75 E-value=7.3e-07 Score=58.76 Aligned_cols=103 Identities=13% Similarity=0.072 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 30799999999873997178504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
.+..+.++..+...+.-+.|- .=...++..++++.++|+.++-==+. ++.++.|+.....
T Consensus 106 PD~~etl~Aae~Lv~eGF~Vl-pY~~~D~v~akrLed~Gc~avMPlgs-------------------PIGSg~Gl~n~~~ 165 (246)
T pfam05690 106 PDPIETLKAAEILVKEGFTVL-PYTTDDPVLARRLEEAGCAAVMPLGA-------------------PIGSGLGLRNPEN 165 (246)
T ss_pred CCHHHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHCCCEEEEECCC-------------------CCCCCCCCCCHHH
T ss_conf 887899999999997899898-86179989999998759849862244-------------------0136888689999
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 99998522898799729888889999999838885233479999
Q gi|254781020|r 249 LEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 249 l~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
|..+.+-. ++|||.|-||-+..|+++||=||||+|.+-|++-.
T Consensus 166 l~~i~e~~-~vPvIVDAGiG~pS~Aa~aMElG~DaVLvNTAIA~ 208 (246)
T pfam05690 166 LRIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAR 208 (246)
T ss_pred HHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEHHHHHHC
T ss_conf 99999967-99889848989678899999745677773067773
No 72
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=98.75 E-value=5e-06 Score=53.83 Aligned_cols=146 Identities=14% Similarity=0.032 Sum_probs=86.1
Q ss_pred HHHHHHHCCCEEEECCCCHHH---HHHH----CCCCC-------HHHHHHHHHHHHHHCC--CCEEEEECCC------CC
Q ss_conf 987765089857625320356---6520----68852-------4307999999998739--9717850478------66
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQE---IIQP----NGNTN-------FADLSSKIALLSSAMD--VPLLLKEVGC------GL 195 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~-------~~~~~~~i~~l~~~~~--~pii~k~v~~------~~ 195 (337)
.+.....|.|++++|..+..- -.++ ..|.. .+-..+.++.+|+.++ .|+.+|..+. ..
T Consensus 149 A~rA~~AGfDGVEIh~ahGyLl~QFLSp~~N~RtDeYGGslENR~Rf~~eIi~aIR~~vg~d~~i~vRis~~d~~~~g~~ 228 (336)
T pfam00724 149 AKRAVEAGFDGVEIHGAHGYLLDQFLSPGSNKRTDEYGGSIENRARFPLEVVDAVKEAVGEDRPIGYRLSPDDVFEGGLT 228 (336)
T ss_pred HHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
T ss_conf 99999829998996142678999862876588977678898897548999999999972877664267465224689988
Q ss_pred CHH----HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 889----9999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 196 SSM----DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 196 ~~~----~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
..+ .++.+.++|+|.+.++.........+... ...+ ...+. .......+++ ..++||++.|+|++..
T Consensus 229 ~~e~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~---~~~~----~~~~~-~~~~~~~~k~-~~~~pvi~~G~i~~~~ 299 (336)
T pfam00724 229 GAETLAQFAYAAGELGVRVLDGTRLAYIHAIEPRVT---GPFP----VETGQ-QVENNEFIKK-VWKGPVITVGRINDPE 299 (336)
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCEEECCCCCCC---CCCC----CCCCH-HHHHHHHHHH-HCCCEEEEECCCCCHH
T ss_conf 426899999999983877564276622320244335---7877----56312-4789999998-7698599969999899
Q ss_pred HHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 999999838-885233479999
Q gi|254781020|r 272 DILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 272 Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
++-++|+-| ||+|++||+++.
T Consensus 300 ~ae~~l~~g~~D~V~~gR~~ia 321 (336)
T pfam00724 300 FAAEIVEEGRADLVAMGRPFLA 321 (336)
T ss_pred HHHHHHHCCCCEEHHHHHHHHH
T ss_conf 9999998799443686699997
No 73
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=98.74 E-value=1.3e-06 Score=57.36 Aligned_cols=225 Identities=17% Similarity=0.136 Sum_probs=115.5
Q ss_pred HHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHH-HCCHHHH
Q ss_conf 863032455789981017462998989625686850126633430002569999999980990660520221-1286688
Q gi|254781020|r 27 DDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVM-FSDHNAI 105 (337)
Q Consensus 27 d~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~-~~~~~~~ 105 (337)
|++++++-+==+-+...-|=..++.|++|++=+++.- ..+... ..+..+....|.-.++-..... ..++...
T Consensus 55 D~lEIV~fVgGG~~~~~~~D~l~i~G~~f~SRL~~GT-----gky~s~--~~~~~ai~aSgaeivTVAlRR~~~~~~~~~ 127 (327)
T PRK11840 55 DQLEIVHFVGGGSDSVASDDSWTVAGKTFSSRLLVGT-----GKYKDF--EETAAAVEASGAEIVTVAVRRVNVSDPGAP 127 (327)
T ss_pred CEEEEEEEECCCCCCCCCCCCEEECCEEEEEEEEEEC-----CCCCCH--HHHHHHHHHHCCCEEEEEEEEECCCCCCCC
T ss_conf 8899999974789988889976899988880178765-----899999--999999998589769999974237888960
Q ss_pred HHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHH----HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 89999986640123220275212367998999----98776508985762532035665206885243079999999987
Q gi|254781020|r 106 KSFELRQYAPHTVLISNLGAVQLNYDFGVQKA----HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSA 181 (337)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 181 (337)
...+... ......+.|.. .-.+.++. +-+++..+.+-+.+-+-... ..-+.+..+.++..+..
T Consensus 128 ~~l~~i~-~~~~~~LPNTA-----Gc~ta~eAvr~a~lARe~~~t~~iKLEVi~D~-------~tL~Pd~~etl~Aae~L 194 (327)
T PRK11840 128 MLTDYID-PKKYTYLPNTA-----GCFTAEDAVRTLRLAREAGGWDLVKLEVLGDQ-------KTLYPDMVETLKAAEVL 194 (327)
T ss_pred HHHHHCC-CCCCEECCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC-------CCCCCCHHHHHHHHHHH
T ss_conf 5776418-02777998565-----77889999999999998559985899980797-------66799858999999999
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEE
Q ss_conf 39971785047866889999999769979994588886510012310234432324431063468899999852289879
Q gi|254781020|r 182 MDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQF 261 (337)
Q Consensus 182 ~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~I 261 (337)
.+.-+.+- .=...++..++++.++|+.+|-=-+. ++.++.|+.....|..+.+- -++||
T Consensus 195 v~eGF~Vl-pY~~dDpv~akrLed~Gc~avMPlgs-------------------PIGSg~Gi~n~~~i~~i~e~-~~vpv 253 (327)
T PRK11840 195 VKEGFQVM-VYCSDDPIAAKRLEDAGAVAVMPLGA-------------------PIGSGLGIQNPYTIRLIVEG-AKVPV 253 (327)
T ss_pred HHCCCEEE-EEECCCHHHHHHHHHCCCEEEEECCC-------------------CCCCCCCCCCHHHHHHHHHH-CCCCE
T ss_conf 97898898-87169868999998759838862245-------------------23478886899999999973-69978
Q ss_pred EECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 9729888889999999838885233479999
Q gi|254781020|r 262 IASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 262 iadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
|.|-||-+..|+++||=||+|+|.+-|++-.
T Consensus 254 ivDAGiG~pS~A~~aMElG~daVL~NTAiA~ 284 (327)
T PRK11840 254 LVDAGVGTASDAAVAMELGCDGVLMNTAIAE 284 (327)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEHHHHHHC
T ss_conf 9957989878999998636666663367672
No 74
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.73 E-value=1.5e-06 Score=57.02 Aligned_cols=178 Identities=15% Similarity=0.071 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCC----CCCCCCHHHHHHHHHHHCCCE
Q ss_conf 0256999999998099066052022112866888999998664012322027521----236799899998776508985
Q gi|254781020|r 73 ERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQ----LNYDFGVQKAHQAVHVLGADG 148 (337)
Q Consensus 73 ~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 148 (337)
+..-..+|++|...|-...-- +...+...++ ...+-+++.-+.... ....-+.+++....+ .+++-
T Consensus 26 ~~im~~mA~Aa~~gGA~giR~--------~~~~dI~aIk-~~v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~~-aGadi 95 (219)
T cd04729 26 PEIMAAMALAAVQGGAVGIRA--------NGVEDIRAIR-ARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAA-AGADI 95 (219)
T ss_pred HHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHH-HCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHH-CCCCE
T ss_conf 789999999999789639980--------8988999998-3289988999956889998456688999999998-59999
Q ss_pred EEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE--ECCCCCCCCCCHHH
Q ss_conf 7625320356652068852430799999999873997178504786688999999976997999--45888865100123
Q gi|254781020|r 149 LFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD--IAGRGGTSWSRIES 226 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~--v~~~gG~~~~~~~~ 226 (337)
+.+.- . ....+....+.+.++.+++..+..+ ...+.+.+++..|.++|+|.|- ++|.-. ..
T Consensus 96 IA~Da--T-----~R~RP~g~~l~~~i~~i~~~~~~l~----MAD~st~ee~~~A~~~G~D~vgTTL~GYT~--~t---- 158 (219)
T cd04729 96 IALDA--T-----DRPRPDGETLAELIKRIHEEYNCLL----MADISTLEEALNAAKLGFDIIGTTLSGYTE--ET---- 158 (219)
T ss_pred EEEEC--C-----CCCCCCCCCHHHHHHHHHHHHCCEE----EEECCCHHHHHHHHHCCCCEEECCCCCCCC--CC----
T ss_conf 99946--7-----8879899789999999999869778----875488999999998499899702145677--87----
Q ss_pred HCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 1023443232443106346889999985228987997298888899999998388852334799
Q gi|254781020|r 227 HRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 227 ~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
+.. . -|-.+.+.+..+. .++|||+-|+|.++.++.++|.+||.+|-||++.
T Consensus 159 -~~~--------~---~PD~~lv~~l~~~-~~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAI 209 (219)
T cd04729 159 -AKT--------E---DPDFELLKELRKA-LGIPVIAEGRINSPEQAAKALELGADAVVVGSAI 209 (219)
T ss_pred -CCC--------C---CCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf -889--------9---9878999999997-5993997069899999999998399899989543
No 75
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.63 E-value=3.3e-05 Score=49.04 Aligned_cols=139 Identities=14% Similarity=0.116 Sum_probs=83.3
Q ss_pred HHHHHHCCCEEEECCCCHHHH---HH-HCCCC---C-------HHHHHHHHHHHHHHCCC--CEEEEEC-----CCCCCH
Q ss_conf 877650898576253203566---52-06885---2-------43079999999987399--7178504-----786688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQEI---IQ-PNGNT---N-------FADLSSKIALLSSAMDV--PLLLKEV-----GCGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~---~-------~~~~~~~i~~l~~~~~~--pii~k~v-----~~~~~~ 197 (337)
+.....+.|++++|..+..-. .+ ....+ . .+-+.+.++.+|+..+. |+.++.. ....+.
T Consensus 144 ~rA~~AGfDgVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~eNR~Rf~~Eiv~aVr~~vg~d~~v~~Ris~~d~~~~G~~~ 223 (353)
T cd02930 144 ALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTW 223 (353)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCH
T ss_conf 99998299989962567614877338754788574579878887999999999999709987499973601268999899
Q ss_pred HHH----HHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCH---HHHHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 999----999976997999458888651001231023443232443106346---8899999852289879972988888
Q gi|254781020|r 198 MDI----ELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPT---PLSLEMARPYCNEAQFIASGGLRNG 270 (337)
Q Consensus 198 ~~~----~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~---~~al~~~~~~~~~v~IiadGGIr~g 270 (337)
++. +.+.++|+|.+.|+...-. .... .. ....|. ......+++ ..++|||+.|||++.
T Consensus 224 ~e~~~~~~~l~~~GvD~i~vs~G~~~--~~~~-------~~-----~~~~p~g~~~~~a~~ir~-~~~~Pvi~~G~i~~p 288 (353)
T cd02930 224 EEVVALAKALEAAGADILNTGIGWHE--ARVP-------TI-----ATSVPRGAFAWATAKLKR-AVDIPVIASNRINTP 288 (353)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCC--CCCC-------CC-----CCCCCCHHHHHHHHHHHH-HCCCCEEECCCCCCH
T ss_conf 99999999999819999996377444--6687-------53-----345772366999999887-548348965997989
Q ss_pred HHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999999838-885233479999
Q gi|254781020|r 271 VDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 271 ~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
..+-++|.-| ||+|.+||+++.
T Consensus 289 ~~ae~~l~~g~aD~V~~gR~lia 311 (353)
T cd02930 289 EVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999998799624784099876
No 76
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.61 E-value=3.9e-06 Score=54.52 Aligned_cols=143 Identities=18% Similarity=0.147 Sum_probs=85.7
Q ss_pred HHHHHHCCCEEEECCCCHHH---HHHH-CCCC---C-------HHHHHHHHHHHHHHCCC--CEEEEECC-----CCCCH
Q ss_conf 87765089857625320356---6520-6885---2-------43079999999987399--71785047-----86688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQE---IIQP-NGNT---N-------FADLSSKIALLSSAMDV--PLLLKEVG-----CGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~---~-------~~~~~~~i~~l~~~~~~--pii~k~v~-----~~~~~ 197 (337)
+.....|.|++++|..+..- -..+ .+.+ . .+-+.+.++.+|+.++. ++.+|..+ ...+.
T Consensus 148 ~~A~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtD~YGGs~eNR~Rf~~eii~air~~vg~df~vgvRls~~d~~~~g~~~ 227 (327)
T cd02803 148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCH
T ss_conf 99998499989983576618887217546987777888989998999999999999739887617997702126899998
Q ss_pred ----HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf ----9999999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 198 ----MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 198 ----~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
+.++.+.++|+|.+.++......... .... .....+. .+.....+++. .++|||+.|+|++..++
T Consensus 228 ~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~-----~~~~----~~~~~~~-~~~~~~~ik~~-~~~pvi~~G~i~~~~~a 296 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSGGSYESPPP-----IIPP----PYVPEGY-FLELAEKIKKA-VKIPVIAVGGIRDPEVA 296 (327)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCC-----CCCC----CCCCCCC-CHHHHHHHHHH-CCCCEEEECCCCCHHHH
T ss_conf 999999999985599989977784566754-----4678----7777522-38999999997-69819998998999999
Q ss_pred HHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999838-885233479999
Q gi|254781020|r 274 LKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 274 ~kAlalG-AdaV~iGr~~l~ 292 (337)
-++|.-| ||.|++||+++.
T Consensus 297 ~~~l~~g~~D~V~~gR~~ia 316 (327)
T cd02803 297 EEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHCCCCCHHHHHHHHHH
T ss_conf 99998899312586699997
No 77
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.59 E-value=7.3e-06 Score=52.90 Aligned_cols=179 Identities=15% Similarity=0.099 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCC----CCCCCCHHHHHHHHHHHCCCE
Q ss_conf 0256999999998099066052022112866888999998664012322027521----236799899998776508985
Q gi|254781020|r 73 ERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQ----LNYDFGVQKAHQAVHVLGADG 148 (337)
Q Consensus 73 ~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 148 (337)
+..-..+|++|...|-...-- +...+...++.. .+-+++.-+.... ....-+.+++.... ..+++-
T Consensus 22 ~~im~~mA~Aa~~gGA~giR~--------~~~~dI~aik~~-v~lPIIGi~K~~~~~s~VyITPt~~ev~~l~-~aGadi 91 (222)
T PRK01130 22 PEIMAAMALAAEQGGAVGIRA--------NGVEDIKAIREV-VDVPIIGIIKRDYPDSEVYITPTLKEVDALA-AAGADI 91 (222)
T ss_pred HHHHHHHHHHHHHCCCEEEEC--------CCHHHHHHHHHH-CCCCEEEEEECCCCCCCEEECCCHHHHHHHH-HCCCCE
T ss_conf 799999999999689629971--------898899999984-7998799995468999737517699999999-869999
Q ss_pred EEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE--ECCCCCCCCCCHHH
Q ss_conf 7625320356652068852430799999999873997178504786688999999976997999--45888865100123
Q gi|254781020|r 149 LFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD--IAGRGGTSWSRIES 226 (337)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~--v~~~gG~~~~~~~~ 226 (337)
+.+. .. ....+....+.+.++.+++..+..+ ...+.+.+++..|.++|+|.|- ++|.- ...
T Consensus 92 IA~D--aT-----~R~RP~g~~~~~~i~~i~~~~~~l~----MAD~st~eea~~A~~~G~D~V~TTLsGYT--~~t---- 154 (222)
T PRK01130 92 IALD--AT-----LRPRPDGETLAELVKRIKEKPGQLL----MADCSTLEEGLAAAKLGFDFIGTTLSGYT--EYT---- 154 (222)
T ss_pred EEEE--CC-----CCCCCCCCCHHHHHHHHHHHHCCEE----EEECCCHHHHHHHHHCCCCEEECCCCCCC--CCC----
T ss_conf 9984--67-----8989899689999999999829878----98548899999999849999972334567--676----
Q ss_pred HCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 1023443232443106346889999985228987997298888899999998388852334799
Q gi|254781020|r 227 HRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 227 ~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
.+.. .. -|-...+.+..+. ++|||+-|+|.++.++.+||.+||.+|-||++.
T Consensus 155 ~~~~-------~~---~pD~~lv~~l~~~--~~pvIaEGri~tPe~a~~al~~GA~aVvVGsAI 206 (222)
T PRK01130 155 EGET-------PE---EPDFALLKELLKA--GCPVIAEGRINTPEQAKKALELGAHAVVVGSAI 206 (222)
T ss_pred CCCC-------CC---CCCHHHHHHHHHC--CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 7787-------89---9869999999958--998997479899999999998499899989754
No 78
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.56 E-value=4.2e-06 Score=54.33 Aligned_cols=204 Identities=12% Similarity=0.039 Sum_probs=109.8
Q ss_pred EEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHH-HCCHHHH-HHHHHHHHCCCHHHHHCCC
Q ss_conf 2998989625686850126633430002569999999980990660520221-1286688-8999998664012322027
Q gi|254781020|r 47 SVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVM-FSDHNAI-KSFELRQYAPHTVLISNLG 124 (337)
Q Consensus 47 st~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~ 124 (337)
..+|.|++|++-+++.- ..+... ..+..+....|.-.++-..... ....... ...+.... .....+.|..
T Consensus 7 ~l~I~g~~f~SRLilGT-----gkY~s~--~~~~~ai~aSgaeiVTVAlRR~~~~~~~~~~~~l~~i~~-~~~~~LPNTA 78 (267)
T CHL00162 7 PLKIGNKSFNSRLMLGT-----GKYRNL--EEAINSIEASGCEIVTVAIRRAQNNKLNGNSSLLDGLDW-NKLWLLPNTA 78 (267)
T ss_pred CEEECCEEEECCEEEEC-----CCCCCH--HHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHCCC-CCEEECCCCC
T ss_conf 66999999885327872-----899999--999999999699879999732557788874678743370-2417856630
Q ss_pred CCCCCCCCCHHHHHHH----HHHHC--------CCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5212367998999987----76508--------98576253203566520688524307999999998739971785047
Q gi|254781020|r 125 AVQLNYDFGVQKAHQA----VHVLG--------ADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVG 192 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~ 192 (337)
.-.+.++..+. +|... +.-+++..+. ..-..+..+.++..+...+.-+.|- .=
T Consensus 79 -----Gc~taeEAVr~A~lAREl~~~~g~~~tnwIKLEVi~D~---------~tLlPD~~etl~Aae~Lv~eGF~Vl-pY 143 (267)
T CHL00162 79 -----GCQTAEEAIRVAFLGRELAKQLGQEDNNFVKLEVIPDP---------KYLLPDPIGTLKAAEFLVRKGFTVL-PY 143 (267)
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCC---------CCCCCCHHHHHHHHHHHHHCCCEEE-EE
T ss_conf -----22879999999999999853015678977999982798---------7779887899999999997899998-95
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 86688999999976997999458888651001231023443232443106346889999985228987997298888899
Q gi|254781020|r 193 CGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVD 272 (337)
Q Consensus 193 ~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~D 272 (337)
...++..++++.++|+.++-==+. ++.++.|+.....|..+.+. .++|||.|-||-+..|
T Consensus 144 ~~dD~v~akrLe~~Gc~avMPlgs-------------------PIGSg~Gl~n~~~l~~i~e~-~~vPvIVDAGiG~pSd 203 (267)
T CHL00162 144 INADPVLAKQLEDIGCATVMPLGS-------------------PIGSGQGLQNLLNLQIIIEN-AKIPVIIDAGIGTPSE 203 (267)
T ss_pred CCCCHHHHHHHHHCCCEEEEECCC-------------------CCCCCCCCCCHHHHHHHHHC-CCCCEEEECCCCCHHH
T ss_conf 489989999998659868863455-------------------12368875899999999964-8998899689896788
Q ss_pred HHHHHHHCCCEEHHHHHHHHH
Q ss_conf 999998388852334799998
Q gi|254781020|r 273 ILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 273 v~kAlalGAdaV~iGr~~l~~ 293 (337)
++.||=||||+|.+-|++-.+
T Consensus 204 Aa~aMElG~DaVL~NTAIA~A 224 (267)
T CHL00162 204 ASQAMELGASGVLLNTAVAKA 224 (267)
T ss_pred HHHHHHCCCCEEEECHHHHCC
T ss_conf 899997467778701676716
No 79
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.54 E-value=7e-06 Score=52.98 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=84.2
Q ss_pred HHHHHHCCCEEEECCCCHHHH---HHH-CC---CCC-------HHHHHHHHHHHHHHCC--CCEEEEECC-----CCCCH
Q ss_conf 877650898576253203566---520-68---852-------4307999999998739--971785047-----86688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQEI---IQP-NG---NTN-------FADLSSKIALLSSAMD--VPLLLKEVG-----CGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~---~~~-~~---~~~-------~~~~~~~i~~l~~~~~--~pii~k~v~-----~~~~~ 197 (337)
+.....+.|++++|..+..-. .++ .+ |.. .+-..+.++.+|+.++ .|+.++..+ +..+.
T Consensus 161 ~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~~~g~~~ 240 (336)
T cd02932 161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDL 240 (336)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
T ss_conf 99998399999863137479998369411677786799789998899999999999839988706896452357899899
Q ss_pred HH----HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 99----99999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 198 MD----IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 198 ~~----~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
++ ++.+.++|+|.|.||..+-.....+ . ...+. ++.....+++ ..++|||+.|||.+..++
T Consensus 241 ~e~~~~a~~l~~~gvd~i~vs~G~~~~~~~~------~-------~~~~~-~~~~a~~ik~-~~~ipvi~~G~i~~p~~a 305 (336)
T cd02932 241 EDSVELAKALKELGVDLIDVSSGGNSPAQKI------P-------VGPGY-QVPFAERIRQ-EAGIPVIAVGLITDPEQA 305 (336)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCC------C-------CCCCC-CHHHHHHHHH-HCCCCEEEECCCCCHHHH
T ss_conf 9999999999975997899558987766667------7-------78642-6799999998-789839997998999999
Q ss_pred HHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999838-885233479999
Q gi|254781020|r 274 LKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 274 ~kAlalG-AdaV~iGr~~l~ 292 (337)
-++|.-| ||.|++||+++.
T Consensus 306 e~~l~~G~~DlV~~gR~~ia 325 (336)
T cd02932 306 EAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHCCCCEEHHHHHHHHH
T ss_conf 99998799400686799997
No 80
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.53 E-value=7e-06 Score=52.98 Aligned_cols=144 Identities=14% Similarity=0.132 Sum_probs=84.5
Q ss_pred HHHHHHHCCCEEEECCCC-HH---HHHHH-CC---CCC-------HHHHHHHHHHHHHHCC--CCEEEEECCC-------
Q ss_conf 987765089857625320-35---66520-68---852-------4307999999998739--9717850478-------
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNP-LQ---EIIQP-NG---NTN-------FADLSSKIALLSSAMD--VPLLLKEVGC------- 193 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~-~~---~~~~~-~~---~~~-------~~~~~~~i~~l~~~~~--~pii~k~v~~------- 193 (337)
.+.....|.|++++|.-+ .. .-.++ .. |.. .+-..+.++.+|+.++ .|+.++....
T Consensus 156 A~rA~~AGfDgVEIH~ah~GyLl~qFlSp~~N~RtDeYGGSlenR~Rf~~Evi~aVR~~vg~d~~v~~R~s~~~~~~~~~ 235 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLR 235 (382)
T ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf 99999849998996245303589985487358988645898788561899999999997098873899965633456654
Q ss_pred ------------CCCHH----HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf ------------66889----99999976997999458888651001231023443232443106346889999985228
Q gi|254781020|r 194 ------------GLSSM----DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN 257 (337)
Q Consensus 194 ------------~~~~~----~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~ 257 (337)
..+.+ .++.+.++|+|.+.++...-.++ .. ..+ +.....+... .....+++ ..
T Consensus 236 ~g~~~~~~~~~~g~~l~e~~~~~~~l~~~G~D~l~vs~g~~~~~---~~-----~~~-~~~~~~g~~~-~~a~~ik~-~~ 304 (382)
T cd02931 236 QGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW---YW-----NHP-PMYQKKGMYL-PYCKALKE-VV 304 (382)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCH---HC-----CCC-CCCCCCCCCH-HHHHHHHH-HC
T ss_conf 57885777888763599999999999983988896477742110---10-----379-7546763148-99999998-73
Q ss_pred CCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 98799729888889999999838-885233479999
Q gi|254781020|r 258 EAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 258 ~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
++||++.|||.+..++-++|.-| ||+|.+||+++.
T Consensus 305 ~iPvi~~G~i~~p~~ae~~l~~g~aD~V~~gR~~ia 340 (382)
T cd02931 305 DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 998899689699999999998699654362289886
No 81
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.52 E-value=7.8e-06 Score=52.73 Aligned_cols=139 Identities=18% Similarity=0.136 Sum_probs=87.0
Q ss_pred HHHHHHCCCEEEECCCCHH---HHHHH----CCCCC-------HHHHHHHHHHHHHHCC--CCEEEEE-----CCCCCCH
Q ss_conf 8776508985762532035---66520----68852-------4307999999998739--9717850-----4786688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQ---EIIQP----NGNTN-------FADLSSKIALLSSAMD--VPLLLKE-----VGCGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~-------~~~~~~~i~~l~~~~~--~pii~k~-----v~~~~~~ 197 (337)
+...+.+.|.+++|-.+.- .-.++ ..|.. .+-..+.++.+|+.|+ .|+.+.. +..+.++
T Consensus 563 ~rA~~AGFD~IEiH~AHGYLl~qFLSPlsN~RtDeYGGsleNR~Rf~lEV~~aVR~~~p~~~Pl~vRiSatDw~~gG~t~ 642 (770)
T PRK08255 563 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPADKPMSVRISAHDWVEGGNTP 642 (770)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCH
T ss_conf 99998399989995234555887538644677543578888777889999999998678988669998510256899999
Q ss_pred HHH----HHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 999----9999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 198 MDI----ELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 198 ~~~----~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
++. +.+.++|+|.|.||..|-.....+. ..-+..+|..+.+.. ..++|+++.|.|.++.++
T Consensus 643 edsv~la~~l~~~GvD~IdvSsGg~~~~~~p~-----------~g~~yQvpfA~~Ir~----e~~i~t~AVG~I~~p~~A 707 (770)
T PRK08255 643 DDAVEIARAFKAAGADMIDVSSGQVSKDEKPV-----------YGRMYQTPFADRIRN----EAGIATIAVGAISEADHV 707 (770)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-----------CCCCCCHHHHHHHHH----HCCCCEEEECCCCCHHHH
T ss_conf 99999999999749989995788888667788-----------887656699999998----759978996188999999
Q ss_pred HHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999838-885233479999
Q gi|254781020|r 274 LKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 274 ~kAlalG-AdaV~iGr~~l~ 292 (337)
=..|+.| ||.|.+||++|+
T Consensus 708 e~Il~~GrADlValgR~~L~ 727 (770)
T PRK08255 708 NSIIAAGRADLCALARPHLA 727 (770)
T ss_pred HHHHHCCCCCEEEECHHHHC
T ss_conf 99997699887524777651
No 82
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=98.48 E-value=1.8e-05 Score=50.56 Aligned_cols=212 Identities=16% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHH-CCHHHHHHHHHHHHCCCHHHHHCC
Q ss_conf 4629989896256868501266334300025699999999809906605202211-286688899999866401232202
Q gi|254781020|r 45 DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMF-SDHNAIKSFELRQYAPHTVLISNL 123 (337)
Q Consensus 45 dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 123 (337)
|..-+|.|++|++=++..- ..+... ..+..+....|.-.++-.....- ..+.....+...... ....+.|.
T Consensus 5 ~d~l~i~g~~f~SRLllGT-----gky~s~--~~~~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~~-~~~~LPNT 76 (262)
T COG2022 5 DDMLTIAGKTFDSRLLLGT-----GKYPSP--AVLAEAVRASGSEIVTVALRRVNATRPGGDGILDLLIPL-GVTLLPNT 76 (262)
T ss_pred CCCEEECCEEEEEEEEEEC-----CCCCCH--HHHHHHHHHCCCCEEEEEEEEECCCCCCCCHHHHHHHHC-CCEECCCC
T ss_conf 3522244746531588724-----789998--999999997278669999886215788853088774113-86767876
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
....... .-+...+-+++..+-+-+.+.+-..+ +.-..+..+.++......+.-+.+- .=...++..++++
T Consensus 77 aGc~tae-EAv~tArlARE~~~t~wiKlEVi~d~-------~tLlPD~~etl~Aae~Lv~eGF~Vl-PY~~dD~v~arrL 147 (262)
T COG2022 77 AGCRTAE-EAVRTARLAREALGTNWIKLEVIGDE-------KTLLPDPIETLKAAEQLVKEGFVVL-PYTTDDPVLARRL 147 (262)
T ss_pred CCCCCHH-HHHHHHHHHHHHCCCCEEEEEEECCC-------CCCCCCHHHHHHHHHHHHHCCCEEE-ECCCCCHHHHHHH
T ss_conf 4558899-99999999999706984899993687-------6548875789999999986798885-0368878999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.++|+.++-=-+ .++.++.|+...+.|..+.+-. +||||.|-||-+..|++.+|=||+|+
T Consensus 148 ee~GcaavMPl~-------------------aPIGSg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~Da 207 (262)
T COG2022 148 EEAGCAAVMPLG-------------------APIGSGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADA 207 (262)
T ss_pred HHCCCEEECCCC-------------------CCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHCCCE
T ss_conf 864966863356-------------------6566786757889999999738-99889867989766889998605543
Q ss_pred EHHHHHHHHH
Q ss_conf 2334799998
Q gi|254781020|r 284 GGLASPFLKP 293 (337)
Q Consensus 284 V~iGr~~l~~ 293 (337)
|++-+++-.+
T Consensus 208 VL~NTAiA~A 217 (262)
T COG2022 208 VLLNTAIARA 217 (262)
T ss_pred EEHHHHHHCC
T ss_conf 2325676603
No 83
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.47 E-value=1.9e-05 Score=50.38 Aligned_cols=146 Identities=14% Similarity=0.162 Sum_probs=84.8
Q ss_pred HHHHHHCCCEEEECCCCHH---HHHHHC-CCC---C-------HHHHHHHHHHHHHHC--CCCEEEEECC-----CCCCH
Q ss_conf 8776508985762532035---665206-885---2-------430799999999873--9971785047-----86688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQ---EIIQPN-GNT---N-------FADLSSKIALLSSAM--DVPLLLKEVG-----CGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~---~-------~~~~~~~i~~l~~~~--~~pii~k~v~-----~~~~~ 197 (337)
+.....|.|++++|..+.. .-.++. ..+ . .+-..+.++.+|+.+ +.++.+|..+ ...+.
T Consensus 148 ~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i~~Ris~~~~~~~g~~~ 227 (343)
T cd04734 148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSP 227 (343)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
T ss_conf 99997399889844577746998469855899676798889998999999999999819877615886762356898998
Q ss_pred HH----HHHHHHCC-CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH
Q ss_conf 99----99999769-97999458888651001231023443232443106346889999985228987997298888899
Q gi|254781020|r 198 MD----IELGLKSG-IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVD 272 (337)
Q Consensus 198 ~~----~~~a~~aG-ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~D 272 (337)
++ ++.+.++| +|.+-||........... .... +.....++ .......+++ ..++|||+.|||.+..+
T Consensus 228 ~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~---~~~p-~~~~~~g~---~~~~a~~ik~-~~~~pvi~~G~i~~~~~ 299 (343)
T cd04734 228 DEALEIAARLAAEGLIDYVNVSAGSYYTLLGLA---HVVP-SMGMPPGP---FLPLAARIKQ-AVDLPVFHAGRIRDPAE 299 (343)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHH---HCCC-CCCCCCCC---CHHHHHHHHH-HCCCCEEEECCCCCHHH
T ss_conf 999999999996699768996567543322211---0068-76677643---4889999999-72985999799899999
Q ss_pred HHHHHHHC-CCEEHHHHHHHH
Q ss_conf 99999838-885233479999
Q gi|254781020|r 273 ILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 273 v~kAlalG-AdaV~iGr~~l~ 292 (337)
+-++|.-| +|.|++||+++.
T Consensus 300 ae~~l~~g~~D~V~~gR~~la 320 (343)
T cd04734 300 AEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred HHHHHHCCCCEEHHHHHHHHH
T ss_conf 999998799621697899997
No 84
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=98.45 E-value=0.0001 Score=46.18 Aligned_cols=142 Identities=11% Similarity=-0.012 Sum_probs=81.2
Q ss_pred HHHHHHHCCCEEEECCCCHHHH---HHH----CCCCC-------HHHHHHHHHHHHHHCCC--CEEEEECCC-------C
Q ss_conf 9877650898576253203566---520----68852-------43079999999987399--717850478-------6
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEI---IQP----NGNTN-------FADLSSKIALLSSAMDV--PLLLKEVGC-------G 194 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~-------~~~~~~~i~~l~~~~~~--pii~k~v~~-------~ 194 (337)
.+.....|.|++++|..+..-. .++ ..|.. .+-..+.++.+|+.++. |+.++...+ .
T Consensus 156 A~rA~~AGfDgVEIHaahGYLl~qFlSp~~N~RtDeYGGS~enR~Rf~~Eii~aVr~~vg~df~i~~R~s~~~~~~~~g~ 235 (370)
T cd02929 156 ALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGI 235 (370)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 99999859898997711355999734774578777468988999899999999999971998759999894125688999
Q ss_pred CCHHHHHH---HHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 68899999---997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 195 LSSMDIEL---GLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 195 ~~~~~~~~---a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
.+.++... ..+..+|.+.++......+.... .+...|. .......+++ ..++||++.|+|.+..
T Consensus 236 ~~~~~~~~~~~~~~~~~d~~~vs~g~~~~~~~~~-----------~~~~~g~-~~~~~~~ik~-~~~~Pvi~vG~i~~p~ 302 (370)
T cd02929 236 ESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDS-----------RFYPEGH-QEPYIKFVKQ-VTSKPVVGVGRFTSPD 302 (370)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCC-----------CCCCCCC-CHHHHHHHHH-HCCCCEEEECCCCCHH
T ss_conf 8889999999997365797998855556656777-----------7678643-6599999998-6088089978979999
Q ss_pred HHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 999999838-885233479999
Q gi|254781020|r 272 DILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 272 Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
.+-++|+-| ||+|++||+++.
T Consensus 303 ~ae~~l~~G~aD~V~~gR~lla 324 (370)
T cd02929 303 KMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999998799426453479876
No 85
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=98.43 E-value=1.9e-05 Score=50.38 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHCCCEEEECCCCHH----HHHHHCC---CCC-------HHHHHHHHHHHHHHCCC--CEEEEECCCCC------
Q ss_conf 98776508985762532035----6652068---852-------43079999999987399--71785047866------
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQ----EIIQPNG---NTN-------FADLSSKIALLSSAMDV--PLLLKEVGCGL------ 195 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~-------~~~~~~~i~~l~~~~~~--pii~k~v~~~~------ 195 (337)
.+.....|.|++++|-.+.- ......+ |.. .+-..+.++.+++.++. |+.+++.+.-.
T Consensus 155 A~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~ 234 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGL 234 (363)
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 99999839998998404444999855875577777668858999889999999999972988669999774546778888
Q ss_pred C----HHHHHHHHHCC-CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 8----89999999769-979994588886510012310234432324431063468899999852289879972988888
Q gi|254781020|r 196 S----SMDIELGLKSG-IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG 270 (337)
Q Consensus 196 ~----~~~~~~a~~aG-ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g 270 (337)
+ .+.++.+.+.| +|.+.+++.+-.....+. ....+. +..-....+. ..++|+|+.|+|.+.
T Consensus 235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~------------~~~~~~-~~~~a~~i~~-~~~~pvi~~G~i~~~ 300 (363)
T COG1902 235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTIT------------VSGPGY-QVEFAARIKK-AVRIPVIAVGGINDP 300 (363)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC------------CCCCCH-HHHHHHHHHH-HCCCCEEEECCCCCH
T ss_conf 89999999999985588447996036445788744------------466412-4789999988-607877986897999
Q ss_pred HHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999999838-885233479999
Q gi|254781020|r 271 VDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 271 ~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
..+-++|+-| ||.|.+||+|+.
T Consensus 301 ~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 301 EQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHHHCCCCCEEEECHHHHC
T ss_conf 99999998299888872636650
No 86
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.43 E-value=1.7e-05 Score=50.75 Aligned_cols=146 Identities=16% Similarity=0.219 Sum_probs=83.1
Q ss_pred HHHHHHCCCEEEECCCCHH---HHHHH-CCCCC----------HHHHHHHHHHHHHHCC--CCEEEEEC-----CCCCCH
Q ss_conf 8776508985762532035---66520-68852----------4307999999998739--97178504-----786688
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQ---EIIQP-NGNTN----------FADLSSKIALLSSAMD--VPLLLKEV-----GCGLSS 197 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~----------~~~~~~~i~~l~~~~~--~pii~k~v-----~~~~~~ 197 (337)
+.....+.|++++|..+.. .-.++ .+++. .+-..+.++.+|+.++ .|+.++.. ....+.
T Consensus 156 ~rA~~AGfDgVEiH~ahGYLl~qFlS~~~N~RtDeYGGS~ENR~Rf~lEii~avr~~vg~d~~v~~Ris~~d~~~~G~~~ 235 (338)
T cd04733 156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE 235 (338)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCH
T ss_conf 99998399989982365548998629876899685798988998899999999999719988699984535424799998
Q ss_pred HH----HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 99----99999769979994588886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 198 MD----IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 198 ~~----~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
++ ++.+.++|+|.+.|+... ...+........ ......+ ..+.....+++ ..++|||+.|+|.+...+
T Consensus 236 ~d~~~~~~~l~~~GvD~i~vs~G~---~~~~~~~~~~~~---~~~~~~~-~~~~~a~~ik~-~~~~Pvi~~G~i~~~~~a 307 (338)
T cd04733 236 EDALEVVEALEEAGVDLVELSGGT---YESPAMAGAKKE---STIAREA-YFLEFAEKIRK-VTKTPLMVTGGFRTRAAM 307 (338)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC---CCCCCCCCCCCC---CCCCCCC-CHHHHHHHHHH-HCCCCEEEECCCCCHHHH
T ss_conf 999999999987699889946885---457322477654---4456751-05999999999-849979998998999999
Q ss_pred HHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999838-885233479999
Q gi|254781020|r 274 LKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 274 ~kAlalG-AdaV~iGr~~l~ 292 (337)
-++|.-| ||.|.+||+++.
T Consensus 308 e~~l~~g~~DlV~~gR~~ia 327 (338)
T cd04733 308 EQALASGAVDGIGLARPLAL 327 (338)
T ss_pred HHHHHCCCCEEHHHHHHHHH
T ss_conf 99998799510898899997
No 87
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=98.41 E-value=4.2e-05 Score=48.44 Aligned_cols=122 Identities=17% Similarity=0.108 Sum_probs=78.3
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+.++..... ..+++-+.+. +. ...+. ..+.+.++.+++.. .++ ...+.+.+++..+.++|+|.|-
T Consensus 53 t~~ev~~l~-~aGadiIA~D--aT------~R~RP-~~~~~lv~~i~~~~--~l~---MAD~st~eea~~A~~~G~D~I~ 117 (192)
T pfam04131 53 TMKDIDELA-NAGADIIALD--GT------DRPRP-VDIESFIKRIKEKG--QLA---MADCSTFEEGLNAHKLGVDIVG 117 (192)
T ss_pred CHHHHHHHH-HCCCCEEEEE--CC------CCCCC-CCHHHHHHHHHHHC--CEE---EEECCCHHHHHHHHHCCCCEEE
T ss_conf 899999999-8599999984--67------89897-58999999999819--988---9974999999999985999998
Q ss_pred --ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf --458888651001231023443232443106346889999985228987997298888899999998388852334799
Q gi|254781020|r 213 --IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 213 --v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
++|.- ... ++ .+ |-...+.+..+ .++|||+-|+|.++.++.++|.+||.+|-||++.
T Consensus 118 TTL~GYT--~~t-----~~---------~~---pD~~ll~~l~~--~~~pvIaEGri~tPe~a~~a~~~GA~aVVVGsAI 176 (192)
T pfam04131 118 TTLSGYT--GGS-----NP---------AE---PDFQLVKTLSE--AGCFVIAEGRYNTPELAKKAIEIGADAVTVGSAI 176 (192)
T ss_pred CCCCCCC--CCC-----CC---------CC---CCHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 2325578--999-----99---------99---97899999986--8993998579899999999998399899989653
No 88
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=98.35 E-value=1.4e-05 Score=51.24 Aligned_cols=124 Identities=16% Similarity=0.230 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
...+.++ ...|+|++-+-...... .....+-......+.-+++- +.+.+++.++.++|++.|-|
T Consensus 121 ~yQI~ea-r~~GADaiLLI~~~L~~-----------~~l~~l~~~a~~lgl~~LvE----vh~~~El~~al~~~a~iIGI 184 (254)
T pfam00218 121 EYQIYEA-RAYGADTVLLIVAVLSD-----------ELLEELYEYARSLGMEPLVE----VHNEEELERALALGAKLIGV 184 (254)
T ss_pred HHHHHHH-HHCCCCEEEHHHHCCCH-----------HHHHHHHHHHHHHCCEEEEE----ECCHHHHHHHHHCCCCEEEE
T ss_conf 9999999-98088863144711999-----------99999999999848867988----68999999998489978963
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 58888651001231023443232443106346889999985228987997298888899999998388852334799998
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
-|+.=.++.. -+.....|. ..+-.++.+|+-+||++..|+.+...+|+|+|.||.+++..
T Consensus 185 NNRnL~tf~v------------------d~~~t~~L~--~~ip~~~~~VsESGI~~~~di~~l~~~G~~~~LIGe~lm~~ 244 (254)
T pfam00218 185 NNRNLKTFEV------------------DLNTTRRLA--PMVPEDVLLVAESGISTPEDVEKLAKHGANAFLVGESLMRA 244 (254)
T ss_pred CCCCHHHHHC------------------CHHHHHHHH--HHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 2788465100------------------579999999--55898987998389999999999998799999989687579
No 89
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.33 E-value=5.2e-05 Score=47.87 Aligned_cols=136 Identities=16% Similarity=0.133 Sum_probs=73.2
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEEEECCC--
Q ss_conf 776508985762532035665206885243079999999987399-71785047866889999999769979994588--
Q gi|254781020|r 140 AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR-- 216 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~-- 216 (337)
+.-..+...++++++.++ ..+.++.+++..+. |-+.-++|++.+.+.++.+.++|+++++--+.
T Consensus 33 al~~gGi~~iEITl~tp~-------------a~~~i~~l~~~~~~~p~~~iGaGTV~~~e~~~~a~~aGA~FiVSP~~~~ 99 (209)
T PRK06552 33 AVIKGGIKAIEVTYTNPF-------------ASEVIKELVERYKDDPEVLIGAGTVLDAVTARQAILAGAQFIVSPSFNR 99 (209)
T ss_pred HHHHCCCCEEEEECCCCC-------------HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
T ss_conf 999879988999678975-------------9999999999817799818988727489999999985998897699989
Q ss_pred ---------------CCCCCCCHHHHCCCCCCC---CHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf ---------------886510012310234432---32443106346889999985228987997298888899999998
Q gi|254781020|r 217 ---------------GGTSWSRIESHRDLESDI---GIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSII 278 (337)
Q Consensus 217 ---------------gG~~~~~~~~~r~~~~~~---~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla 278 (337)
|..|-..+....+..-.. ++. ...|.. .+...+....+++++..||| +...+.+.|.
T Consensus 100 ~v~~~a~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA-~~~G~~---yikal~~p~p~~~~~ptGGV-~~~N~~~~l~ 174 (209)
T PRK06552 100 ETAKICNRYQIPYLPGCMTVTEIVTALEAGVDIVKLFPG-STVGPS---FISAIKGPLPQVNIMVTGGV-SLDNVKDWFA 174 (209)
T ss_pred HHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEEEECCH-HHCCHH---HHHHHHCCCCCCCEEECCCC-CHHHHHHHHH
T ss_conf 999999985996417979999999999869995885833-324899---99998664899928863899-9888999998
Q ss_pred HCCCEEHHHHHHHHH
Q ss_conf 388852334799998
Q gi|254781020|r 279 LGASLGGLASPFLKP 293 (337)
Q Consensus 279 lGAdaV~iGr~~l~~ 293 (337)
+||.+|++|+.+...
T Consensus 175 aG~~~vgvGs~l~~~ 189 (209)
T PRK06552 175 AGADAVGIGGELNKL 189 (209)
T ss_pred CCCCEEEECHHHCCC
T ss_conf 799889986577082
No 90
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=98.29 E-value=7.5e-05 Score=46.94 Aligned_cols=135 Identities=20% Similarity=0.173 Sum_probs=74.0
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC---
Q ss_conf 77650898576253203566520688524307999999998739971785047866889999999769979994588---
Q gi|254781020|r 140 AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR--- 216 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~--- 216 (337)
+....+...++++++.++ ..+.++.+++..+..+ ..++|++.++++++.++++|+++++-=+.
T Consensus 30 al~~~Gi~~iEVTl~tp~-------------a~~~I~~l~~~~~~~~-~iGAGTVlt~e~~~~ai~aGA~FiVSP~~~~~ 95 (206)
T PRK09140 30 ALIEAGFRAIEIPLNSPD-------------PFDSIAALVKALGDDA-LIGAGTVLSPEQVDRLADAGGRLIVTPNIDPE 95 (206)
T ss_pred HHHHCCCCEEEEECCCCC-------------HHHHHHHHHHHCCCCE-EEEEEECCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 999869988999179976-------------9999999999679865-99862046799999999859999999999899
Q ss_pred --------------CCCCCCCHHHHCCCCCCC---CHHHHHCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHH
Q ss_conf --------------886510012310234432---32443106346889999985228-987997298888899999998
Q gi|254781020|r 217 --------------GGTSWSRIESHRDLESDI---GIVFQDWGIPTPLSLEMARPYCN-EAQFIASGGLRNGVDILKSII 278 (337)
Q Consensus 217 --------------gG~~~~~~~~~r~~~~~~---~~~~~~~gi~~~~al~~~~~~~~-~v~IiadGGIr~g~Dv~kAla 278 (337)
|..|-..+....+..-.. ++ ....|.. -+...+.... .++++..|||.- .++-..|.
T Consensus 96 vi~~a~~~~i~~iPG~~TPsEi~~A~~~Ga~~vKlFP-A~~~Gp~---~ikal~~p~P~~~~~~ptGGV~~-~N~~~~l~ 170 (206)
T PRK09140 96 VIRRAVAYGMTVMPGVATPTEAFAALRAGADALKLFP-ASQLGPA---GIKALRAVLPPDVPVFAVGGVTP-ENLAPYLA 170 (206)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEECC-HHCCCHH---HHHHHHCCCCCCCEEEECCCCCH-HHHHHHHH
T ss_conf 9999998299652785999999999985987156575-1105999---99998643899998995379888-88999998
Q ss_pred HCCCEEHHHHHHHHH
Q ss_conf 388852334799998
Q gi|254781020|r 279 LGASLGGLASPFLKP 293 (337)
Q Consensus 279 lGAdaV~iGr~~l~~ 293 (337)
.||.+|++|+.+...
T Consensus 171 aGa~avG~Gs~L~~~ 185 (206)
T PRK09140 171 AGAAGFGLGSALYRP 185 (206)
T ss_pred CCCCEEEECHHCCCC
T ss_conf 699199960651599
No 91
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.27 E-value=9.1e-05 Score=46.44 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899999997699799
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
.+...+.++. ..|+|++-+-..... ......+-.....++..+++- +.+.+++.++.++|++.|
T Consensus 121 id~~QI~ea~-~~GADaiLLI~~~L~-----------~~~l~~l~~~a~~lgl~~LvE----vh~~~El~~a~~~~a~iI 184 (261)
T PRK00278 121 IDPYQIYEAR-AAGADAILLIVAALD-----------DEQLKELLDLAHELGLDVLVE----VHDEEELERALKLGAPLI 184 (261)
T ss_pred CCHHHHHHHH-HCCCCCHHHHHHHCC-----------HHHHHHHHHHHHHHCCEEEEE----ECCHHHHHHHHHCCCCEE
T ss_conf 7699999999-818985789887558-----------999999999999829907977----689999999984799889
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 94588886510012310234432324431063468899999852289879972988888999999983888523347999
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
-|-|+.=.++. .-+.....|.. ..-.++.+|+-+||++..|+.+...+|+|+|.||+.++
T Consensus 185 GINnRnL~t~~------------------vd~~~~~~L~~--~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm 244 (261)
T PRK00278 185 GINNRNLKTFE------------------VDLDTTERLAP--LIPKDRLLVSESGIFTPEDLKRLAKAGADAFLVGESLM 244 (261)
T ss_pred EEECCCCHHCE------------------ECHHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf 87467711200------------------37899999996--48999889979999999999999977999999897876
Q ss_pred HH
Q ss_conf 98
Q gi|254781020|r 292 KP 293 (337)
Q Consensus 292 ~~ 293 (337)
..
T Consensus 245 ~~ 246 (261)
T PRK00278 245 RA 246 (261)
T ss_pred CC
T ss_conf 79
No 92
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.24 E-value=9.6e-05 Score=46.31 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=80.3
Q ss_pred HHHHHHHCCCEEEECCCCHHH---HHHH-CCCC---C-------HHHHHHHHHHHHHHCCCC-EEEEECC-------CCC
Q ss_conf 987765089857625320356---6520-6885---2-------430799999999873997-1785047-------866
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQE---IIQP-NGNT---N-------FADLSSKIALLSSAMDVP-LLLKEVG-------CGL 195 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~---~-------~~~~~~~i~~l~~~~~~p-ii~k~v~-------~~~ 195 (337)
.+.....|.|++++|..+..- -.++ .+++ . .+-+.+.++.+|+.++.. +.+++.+ ...
T Consensus 158 A~ra~~AGfDgVEiHaaHGyLl~qFLSp~~N~RtDeYGGS~eNR~Rf~~Eii~aIR~~vg~d~i~vRlSp~~~~~g~~~~ 237 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDS 237 (338)
T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 99999839999998224406899853853268989789998999899999999999972987089996576676887888
Q ss_pred C-HH----HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 8-89----999999769979994588886510012310234432324431063468899999852289879972988888
Q gi|254781020|r 196 S-SM----DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG 270 (337)
Q Consensus 196 ~-~~----~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g 270 (337)
+ .+ .++.+.++|+|.+.++.+..... .. +. .......+++. .++|||+.||| +.
T Consensus 238 ~~~~~~~~~~~~l~~~gid~~~v~~~~~~~~---------~~---------~~-~~~~~~~ir~~-~~~pvi~~G~i-~~ 296 (338)
T cd02933 238 DPEATFSYLAKELNKRGLAYLHLVEPRVAGN---------PE---------DQ-PPDFLDFLRKA-FKGPLIAAGGY-DA 296 (338)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCC---------CC---------CC-CHHHHHHHHHH-CCCCEEEECCC-CH
T ss_conf 7799999999999985998899726877777---------77---------76-57799999998-69979996998-99
Q ss_pred HHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 9999999838-885233479999
Q gi|254781020|r 271 VDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 271 ~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
..+-++|+-| ||.|++||+++.
T Consensus 297 ~~ae~~l~~G~~D~V~~gR~lia 319 (338)
T cd02933 297 ESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999998799603685299987
No 93
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.22 E-value=0.00011 Score=45.98 Aligned_cols=126 Identities=15% Similarity=0.230 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899999997699799
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
.+..++.++. ..|+|++-+-...... ...+.+-......+..+++- +.+.+++.++.++|++.|
T Consensus 82 id~~QI~ea~-~~GAdaiLLI~~~L~~-----------~~l~~l~~~a~~lgl~~LvE----vh~~~El~~a~~~~a~iI 145 (217)
T cd00331 82 IDPYQIYEAR-AAGADAVLLIVAALDD-----------EQLKELYELARELGMEVLVE----VHDEEELERALALGAKII 145 (217)
T ss_pred CCHHHHHHHH-HCCCCCHHHHHHHCCH-----------HHHHHHHHHHHHHCCEEEEE----ECCHHHHHHHHHCCCCEE
T ss_conf 7699999999-8199878798885499-----------99999999999949827988----589999999995799878
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 94588886510012310234432324431063468899999852289879972988888999999983888523347999
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
-|-|+.=.++. .-+.....|.. ..-.++.+|+-+||++..|+.+...+|+|+|.||+.++
T Consensus 146 GINnRdL~t~~------------------vd~~~~~~L~~--~ip~~~~~IsESGI~~~~di~~l~~~G~d~~LIG~sLm 205 (217)
T cd00331 146 GINNRDLKTFE------------------VDLNTTERLAP--LIPKDVILVSESGISTPEDVKRLAEAGADAVLIGESLM 205 (217)
T ss_pred EECCCCCHHCE------------------ECHHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHH
T ss_conf 42167712303------------------47899999996--48989889982799999999999987999999897886
Q ss_pred HH
Q ss_conf 98
Q gi|254781020|r 292 KP 293 (337)
Q Consensus 292 ~~ 293 (337)
+.
T Consensus 206 ~~ 207 (217)
T cd00331 206 RA 207 (217)
T ss_pred CC
T ss_conf 79
No 94
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=98.21 E-value=6.2e-05 Score=47.41 Aligned_cols=135 Identities=19% Similarity=0.123 Sum_probs=72.6
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC-
Q ss_conf 9877650898576253203566520688524307999999998739971785047866889999999769979994588-
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR- 216 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~- 216 (337)
.++....+...++++++.++ ..+.++.+++..+. +..++|++.+.+.++.+.++|++.++--+.
T Consensus 31 ~~al~~gGi~~iEiTl~t~~-------------a~~~I~~l~~~~p~--~~iGaGTV~~~e~~~~a~~aGA~FiVSP~~~ 95 (210)
T PRK07455 31 AEAVAAGGMRLIEITWNSDQ-------------PAELISQLREKLPE--CIIGTGTLLTLEDLEEAIAAGAQFCFTPHVD 95 (210)
T ss_pred HHHHHHCCCCEEEEECCCCC-------------HHHHHHHHHHHCCC--CEEEEEECCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 99999879988999689988-------------99999999987899--6898881878999999998699999868888
Q ss_pred ----------------CCCCCCCHHHHCCCCCCC---CHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHH
Q ss_conf ----------------886510012310234432---3244310634688999998522898799729888889999999
Q gi|254781020|r 217 ----------------GGTSWSRIESHRDLESDI---GIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSI 277 (337)
Q Consensus 217 ----------------gG~~~~~~~~~r~~~~~~---~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAl 277 (337)
|..|-..+....+..-.. ++.....|. ..+...+....+++++..|||. ...+-..|
T Consensus 96 ~~vi~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~GG~---~ylkal~~p~p~i~~~ptGGV~-~~n~~~yl 171 (210)
T PRK07455 96 LELIQAAVAADIPIIPGALTPTEIVTAWQAGASCVKVFPVQAVGGA---DYIKSLQGPLGHIPLIPTGGVT-LENAQAFI 171 (210)
T ss_pred HHHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEEEECCCHHCCCH---HHHHHHHCCCCCCCEEECCCCC-HHHHHHHH
T ss_conf 9999999982997658869999999999869984775051320679---9999986548999388789989-88899999
Q ss_pred HHCCCEEHHHHHHH
Q ss_conf 83888523347999
Q gi|254781020|r 278 ILGASLGGLASPFL 291 (337)
Q Consensus 278 alGAdaV~iGr~~l 291 (337)
.+|+.+|++|+.+.
T Consensus 172 ~ag~~~vg~Gs~l~ 185 (210)
T PRK07455 172 QAGAIAVGLSSQLF 185 (210)
T ss_pred HCCCEEEEECHHHC
T ss_conf 68997999884618
No 95
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=98.17 E-value=0.00013 Score=45.45 Aligned_cols=95 Identities=16% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
+-......+..+++- +.+.+++.++.++|+..|-|-|+.=.+... -+.+...|. ..
T Consensus 148 l~~~A~~LGm~~LVE----Vh~~eEl~rAl~~ga~iIGINnRdL~tf~v------------------dl~~t~~la--~~ 203 (254)
T COG0134 148 LVDRAHELGMEVLVE----VHNEEELERALKLGAKIIGINNRDLTTLEV------------------DLETTEKLA--PL 203 (254)
T ss_pred HHHHHHHCCCCEEEE----ECCHHHHHHHHHCCCCEEEEECCCCCHHEE------------------CHHHHHHHH--HH
T ss_conf 999999769923899----789999999996799889983788402100------------------688999988--44
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 228987997298888899999998388852334799998
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
+..++.+|.-+||.+..|+.+....|||++.||++++..
T Consensus 204 ~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 204 IPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 877758996179899999999997489989963888569
No 96
>PRK13129 consensus
Probab=98.16 E-value=0.00046 Score=42.29 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=90.3
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 23679989999877650898576253203566520688524307999999998739971785047866889999999769
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG 207 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG 207 (337)
.-..++.+...+.....+.+++.+ .+.|.+. .+.+....+..+..++.- +.-.++.+-++...+..
T Consensus 106 ~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~eE------------~~~~~~~~~~~gl~~I~l-vaPtt~~~Ri~~i~~~~ 171 (267)
T PRK13129 106 PLLNRGMERFCEQAAAAGVAGLVV-PDLPLEE------------AEKLSPIAAERGIDLILL-VAPTTPAERMKRIAQQS 171 (267)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHCC
T ss_conf 898855999999998669875767-8999899------------999999998539816899-48999689999998168
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 97999458888651001231023443232443106346889999985228987997298888899999998388852334
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
-.+|.+-..-|.|+.... ..-.....+..+++. .++||..-=||++..|+-++...|||.|-||
T Consensus 172 ~gFiY~vs~~GvTG~~~~---------------~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~ADGvIVG 235 (267)
T PRK13129 172 RGFTYLVSVTGVTGERSQ---------------MENRVESLLQQLRQV-TSKPIAVGFGISGPEQARQVREWGADGAIVG 235 (267)
T ss_pred CCEEEEEECCCCCCCCCC---------------CCHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 980898734665676544---------------508899999999983-4898178844799999999985499999987
Q ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf 7999984146-6899999999999999999
Q gi|254781020|r 288 SPFLKPAMDS-SDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 288 r~~l~~~~~G-~~gv~~~l~~l~~el~~~m 316 (337)
++++..+.++ ++-....+..+..+||..+
T Consensus 236 SaiV~~i~e~~~~~~~~~v~~fvk~lk~al 265 (267)
T PRK13129 236 SAFVKRLAEASPGEGLQEAGEFCRELRAAA 265 (267)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 899999986591757999999999999986
No 97
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.10 E-value=6e-05 Score=47.50 Aligned_cols=74 Identities=23% Similarity=0.171 Sum_probs=49.4
Q ss_pred HHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 999999976997999458--888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
+.+....+.|+.-|.+.. .-|+. .++ -++.+....+ ..++|||++||+.+-.|+.+
T Consensus 156 d~~~~~~~~G~geil~tdI~rDGt~------------------~G~---d~~l~~~i~~-~~~~pvIasGGv~s~~dl~~ 213 (252)
T PRK13597 156 EWAVKGVELGAGEILLTSMDRDGTK------------------EGY---DLRLTRMVAE-AVGVPVIASGGAGRMEHFLE 213 (252)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCCC------------------CCC---CHHHHHHHHH-CCCCCEEEECCCCCHHHHHH
T ss_conf 9999999648999999757376844------------------476---9599999985-07998999789899999999
Q ss_pred HHHHCCCEEHHHHHHHHH
Q ss_conf 998388852334799998
Q gi|254781020|r 276 SIILGASLGGLASPFLKP 293 (337)
Q Consensus 276 AlalGAdaV~iGr~~l~~ 293 (337)
+.-+|+++|-+|++|.+.
T Consensus 214 l~~~g~~gvi~G~al~~~ 231 (252)
T PRK13597 214 AFQAGAEAALAASVFHFG 231 (252)
T ss_pred HHHCCCCEEEEHHHHHCC
T ss_conf 987899699871276779
No 98
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=98.07 E-value=0.00018 Score=44.73 Aligned_cols=42 Identities=14% Similarity=0.174 Sum_probs=34.3
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 9999852289879972988888999999983888523347999
Q gi|254781020|r 249 LEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 249 l~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+...+....+++++..|||.- .++-+.|.+||.+|.+|+.+.
T Consensus 139 lkal~~p~p~~~f~ptGGv~~-~N~~~yl~~g~v~~~~GS~l~ 180 (196)
T pfam01081 139 IKALAGPFPQVRFCPTGGIHP-ANVRDYLALPNILCVGGSWLV 180 (196)
T ss_pred HHHHHCCCCCCEEEEECCCCH-HHHHHHHHCCCEEEEECHHHC
T ss_conf 999857799986998079898-889999968986999893648
No 99
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=98.01 E-value=0.00029 Score=43.50 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=78.0
Q ss_pred HHHHHHCCCEEEECCCCHHH---HHHH----CCCCC-------HHHHHHHHHHHHHHCCCC-EEEEECC--------CCC
Q ss_conf 87765089857625320356---6520----68852-------430799999999873997-1785047--------866
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQE---IIQP----NGNTN-------FADLSSKIALLSSAMDVP-LLLKEVG--------CGL 195 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~-------~~~~~~~i~~l~~~~~~p-ii~k~v~--------~~~ 195 (337)
+.....|.|++++|..+..- -.++ ..|.. .+-..+.++.+|+.++.. +.++..+ ...
T Consensus 166 ~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSleNR~Rf~~Eii~aVr~avg~d~v~vRis~~~~~~~~~~g~ 245 (362)
T PRK10605 166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGP 245 (362)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99998399989970247369997389766789887899789998899999999999739873799972665656665788
Q ss_pred C-HH----HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-HHHHCCCCEEEECCCCCC
Q ss_conf 8-89----99999976997999458888651001231023443232443106346889999-985228987997298888
Q gi|254781020|r 196 S-SM----DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM-ARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 196 ~-~~----~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~-~~~~~~~v~IiadGGIr~ 269 (337)
+ .+ .+..+.+.|+|.+.++...... +.|....+.. +++ ..++|||+.|++ +
T Consensus 246 ~~~~~~~~~~~~l~~~gv~~l~~s~p~~~~---------------------~~~~~~~~~~~ik~-~v~~PVi~~G~~-t 302 (362)
T PRK10605 246 NEEADALYLIEQLGKRGIAYLHMSEPDWAG---------------------GEPYSDAFREKVRA-RFHGPIIGAGAY-T 302 (362)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEECCCCCCC---------------------CCCCCHHHHHHHHH-HCCCCEEECCCC-C
T ss_conf 768999999999986297499972685568---------------------98751999999998-769978976899-9
Q ss_pred HHHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 89999999838-885233479999
Q gi|254781020|r 270 GVDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 270 g~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
...+-++|+-| ||.|++||++|-
T Consensus 303 pe~Ae~~l~~G~aDlV~~gR~llA 326 (362)
T PRK10605 303 AEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHHHHHHHCCCCCEEEEHHHHHH
T ss_conf 999999998899879810068775
No 100
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.99 E-value=0.00011 Score=45.90 Aligned_cols=74 Identities=19% Similarity=0.059 Sum_probs=48.6
Q ss_pred HHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 999999976997999458--888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
+.++.+.+.|+..|++-. .-|+ ..++- ...+....+ ..++|||+.||+++-.|+.+
T Consensus 152 e~~~~~~~~g~~eii~tdI~~dGt------------------~~G~d---~~~~~~i~~-~~~~pviasGGv~s~~di~~ 209 (240)
T PRK13585 152 EWAQRFEELGAGSILFTNVDVEGL------------------LQGVN---PEPVRELVD-SVDIPVIASGGVTSLDDVKA 209 (240)
T ss_pred HHHHHHHHCCCCEEEEEEECCHHH------------------HCCCC---HHHHHHHHH-HCCCCEEEECCCCCHHHHHH
T ss_conf 777888863873589864233223------------------25789---899999998-68999999889999999999
Q ss_pred HHHHCCCEEHHHHHHHHH
Q ss_conf 998388852334799998
Q gi|254781020|r 276 SIILGASLGGLASPFLKP 293 (337)
Q Consensus 276 AlalGAdaV~iGr~~l~~ 293 (337)
.-.+|++.|-+|+++...
T Consensus 210 l~~~g~~gvivG~Al~~g 227 (240)
T PRK13585 210 LKEAGAAGVVVGSALYKG 227 (240)
T ss_pred HHHCCCCEEEEEHHHHCC
T ss_conf 997899789987687679
No 101
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=97.99 E-value=0.00031 Score=43.31 Aligned_cols=131 Identities=18% Similarity=0.196 Sum_probs=75.1
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHH---HHCCCCEEEEECC------CCCC----HHHHH
Q ss_conf 999987765089857625320356652068852430799999999---8739971785047------8668----89999
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLS---SAMDVPLLLKEVG------CGLS----SMDIE 201 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~~pii~k~v~------~~~~----~~~~~ 201 (337)
...+++. ..+++.+.+.++.... ....+....+.+.++. ..+..|+++-... +..+ ...++
T Consensus 78 ~ev~~Ai-~~GAdeid~vi~~~~~-----~~~~~~~~~~~i~~v~~~~~~~~lkvIiE~~~~~~~~~~~~~~~~i~~a~r 151 (231)
T pfam01791 78 AEAEEAI-ALGADEVDMVVNIGAD-----GSEDEEQVLAEIAAVKEACHGEGLKVILEAYLRGEEIKDKVDPHLVAKATR 151 (231)
T ss_pred HHHHHHH-HCCCCEEEEEEECCCC-----CCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCHHHHHHHHH
T ss_conf 8799999-8799889999724657-----895599999999999986310487089998515721003268999999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC-CCEEEECCCC------CCHHHHH
Q ss_conf 99976997999458888651001231023443232443106346889999985228-9879972988------8889999
Q gi|254781020|r 202 LGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN-EAQFIASGGL------RNGVDIL 274 (337)
Q Consensus 202 ~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~-~v~IiadGGI------r~g~Dv~ 274 (337)
.+.++|+|+|-.+...+...+++ ..+..+.++ +.. ++||.+.||| |+-.++.
T Consensus 152 ia~e~GaD~vKtstg~~~~gat~-------------------~~v~~~~~~--~~~~~~~Vk~sGGi~~~~~~~~l~~a~ 210 (231)
T pfam01791 152 VGAEAGADFVKTSTGFGERGATE-------------------EDVQIFKEV--VGGAPPGVKASGGIKEKDFLRTVEDAI 210 (231)
T ss_pred HHHHHCCCEEEECCCCCCCCCCH-------------------HHHHHHHHH--HCCCCCCEEEECCCCCCCHHHHHHHHH
T ss_conf 99995999898157878887788-------------------899999998--568787489933868643789999999
Q ss_pred HHHHHCCC--EEHHHHHHHH
Q ss_conf 99983888--5233479999
Q gi|254781020|r 275 KSIILGAS--LGGLASPFLK 292 (337)
Q Consensus 275 kAlalGAd--aV~iGr~~l~ 292 (337)
++|.+||+ .+..||..|+
T Consensus 211 ~~i~aGA~~~G~s~Gr~i~q 230 (231)
T pfam01791 211 ALIEAGADRIGVSAGRAIWQ 230 (231)
T ss_pred HHHHCCCCHHHHHHHHHHHC
T ss_conf 99986998120999899876
No 102
>PRK13122 consensus
Probab=97.95 E-value=0.0012 Score=39.82 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=95.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-...+.+...+.....+.+++.+ ++.|.+. .+.+.......+...+. ++...++.+..+..
T Consensus 82 ~Y~N~i~~~G~~~F~~~~~~~GvdGvIi-pDLP~ee------------~~~~~~~~~~~gi~~I~-lvaPtt~~~Ri~~i 147 (242)
T PRK13122 82 TYYNIICHYGEQAFFEKCRDTGVYGLII-PDLPYEL------------SQRLKQQFSHYGVKIIS-LVAMTTDDKRIKDI 147 (242)
T ss_pred EECHHHHHHCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHH
T ss_conf 8516988727999999998769986777-8998788------------99999999867986898-71899989999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 9769979994588886510012310234432324431063468-899999852289879972988888999999983888
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGAS 282 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAd 282 (337)
.+..-.+|..-..-|.|+..... .+.+ ..+..+++. .++||..-=||++..|+-+ +.-+||
T Consensus 148 ~~~s~GFiY~vs~~GvTG~~~~~----------------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~-i~~~AD 209 (242)
T PRK13122 148 VSHAEGFIYTVTMNATTGQNGAF----------------HPELKRKIESIKAI-ANVPVVAGFGIRTPQHVAD-IKEVAD 209 (242)
T ss_pred HHHCCCCEEEEECCCCCCCCCCC----------------CHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHH-HHHHCC
T ss_conf 98299966987335435765556----------------58899999999972-5998587158799999999-981199
Q ss_pred EEHHHHHHHHHHC-CCHHHHHHHHHHHHHHHH
Q ss_conf 5233479999841-466899999999999999
Q gi|254781020|r 283 LGGLASPFLKPAM-DSSDAVVAAIESLRKEFI 313 (337)
Q Consensus 283 aV~iGr~~l~~~~-~G~~gv~~~l~~l~~el~ 313 (337)
.|-+|++++.... .+.+.+.++++.+++.|.
T Consensus 210 GvIVGSaivk~i~~~~~e~~~~~i~~l~~aL~ 241 (242)
T PRK13122 210 GIVIGSEIVKRFKSNTREEIIKYLQSIQQTLN 241 (242)
T ss_pred EEEECHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 99984899999996798999999999999855
No 103
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.94 E-value=0.00029 Score=43.50 Aligned_cols=125 Identities=20% Similarity=0.204 Sum_probs=75.6
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHH----HHHHHHHCC
Q ss_conf 99998776508985762532035665206885243079999999987399717850---47866889----999999769
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE---VGCGLSSM----DIELGLKSG 207 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~---v~~~~~~~----~~~~a~~aG 207 (337)
.+.+++. ..|++-+.+-++...- . ..++..+.+.++.+++..+..+ +|- .+- .+.+ ..+.+.++|
T Consensus 78 ~E~~~ai-~~GAdEiD~Vin~~~~--~---~g~~~~v~~ei~~v~~~~~~~~-lKVIlEt~~-Lt~~ei~~a~~~~~~aG 149 (221)
T PRK00507 78 FEAKDAI-ANGADEIDMVINIGAL--K---SGDWDAVEADIRAVVEAAGGKV-LKVIIETCL-LTDEEKVKACEICKEAG 149 (221)
T ss_pred HHHHHHH-HCCCCEEEEECCHHHH--H---CCCHHHHHHHHHHHHHHHCCCC-EEEEEECCC-CCHHHHHHHHHHHHHHC
T ss_conf 9999999-8599877740259999--7---5848899999999998727673-699974465-99999999999999829
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 979994588886510012310234432324431063468899999-8522898799729888889999999838885233
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
+|+|--|..-+...+++ +.+... ..+++++.|=++||||+..|+.+.|.+||+-++-
T Consensus 150 adfvKTSTGf~~~gat~----------------------e~v~~m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~riGt 207 (221)
T PRK00507 150 ADFVKTSTGFSTGGATV----------------------EDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATRLGT 207 (221)
T ss_pred CCEEEECCCCCCCCCCH----------------------HHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHCCC
T ss_conf 78786058878899899----------------------99999999728786386778989999999999827513216
Q ss_pred HHH
Q ss_conf 479
Q gi|254781020|r 287 ASP 289 (337)
Q Consensus 287 Gr~ 289 (337)
.+.
T Consensus 208 S~~ 210 (221)
T PRK00507 208 SAG 210 (221)
T ss_pred CCH
T ss_conf 758
No 104
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=97.93 E-value=0.00011 Score=45.97 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 2898799729888889999999838885233479999
Q gi|254781020|r 256 CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
..++|+|+.||+++-.|+.+...+|+++|.+|+++.+
T Consensus 189 ~~~~pii~~GGv~~~~di~~l~~~g~~gvivg~al~~ 225 (229)
T pfam00977 189 AVNIPVIASGGVGSLEDLKELFSEGVDGVIAGSALHE 225 (229)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 6899899985899999999999879989998578668
No 105
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.00085 Score=40.71 Aligned_cols=158 Identities=15% Similarity=0.127 Sum_probs=84.1
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 98776508985762532035665206885243079999999987399717850478668899999997699799945888
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRG 217 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~g 217 (337)
.++.-..+.++++++++.++ ..+.|+.+++..+.- +-+.|++.+++.++.+.++|++.|+-=|..
T Consensus 31 a~Ali~gGi~~IEITl~sp~-------------a~e~I~~l~~~~p~~--lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~ 95 (211)
T COG0800 31 AKALIEGGIPAIEITLRTPA-------------ALEAIRALAKEFPEA--LIGAGTVLNPEQARQAIAAGAQFIVSPGLN 95 (211)
T ss_pred HHHHHHCCCCEEEEECCCCC-------------HHHHHHHHHHHCCCC--EECCCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 99999769876999647987-------------899999999867465--882455669999999998599789899999
Q ss_pred -----------------CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHC
Q ss_conf -----------------865100123102344323244310634688999998522898799729888889999999838
Q gi|254781020|r 218 -----------------GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILG 280 (337)
Q Consensus 218 -----------------G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalG 280 (337)
..+-..+.......-.....+-....-....+.........++++-.|||.-- .+...+++|
T Consensus 96 ~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs~~-N~~~yla~g 174 (211)
T COG0800 96 PEVAKAANRYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVSLD-NAADYLAAG 174 (211)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHCCCCCCCEEEECCCCCHH-HHHHHHHCC
T ss_conf 9999999867996368879989999999807224564373113769899987389999858546987877-799997178
Q ss_pred CCEEHHHHHHHHH--H-CCCHHHHHHHHHHHHHH
Q ss_conf 8852334799998--4-14668999999999999
Q gi|254781020|r 281 ASLGGLASPFLKP--A-MDSSDAVVAAIESLRKE 311 (337)
Q Consensus 281 AdaV~iGr~~l~~--~-~~G~~gv~~~l~~l~~e 311 (337)
+.+|++|+.+... + .+-.+.+.+....+.+.
T Consensus 175 v~avG~Gs~l~~~~~~~~~~~~~i~~~a~~~~~~ 208 (211)
T COG0800 175 VVAVGLGSWLVPKDLIAAGDWDRITELAREAVAL 208 (211)
T ss_pred CEEEECCCCCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0599547442673555314499999999999998
No 106
>PRK03220 consensus
Probab=97.92 E-value=0.00013 Score=45.50 Aligned_cols=75 Identities=21% Similarity=0.109 Sum_probs=50.3
Q ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 8999999976997999458--88865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~ 274 (337)
.+.++.+.+.|+..|++.. .-|+ ..++ -++.+..+... .++|||+.||+.+-.|+.
T Consensus 162 ~~~i~~~~~~g~geil~tdI~rDGt------------------~~G~---d~~l~~~i~~~-~~~piIasGGv~s~~di~ 219 (257)
T PRK03220 162 VEWAARGAELGVGEILLNSMDADGT------------------KAGF---DLEMLRAVRAA-VTVPVIASGGAGAVEHFA 219 (257)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCC------------------CCCC---CHHHHHHHHHH-CCCCEEEECCCCCHHHHH
T ss_conf 9999998626988899998868660------------------2378---96999999974-899989987899999999
Q ss_pred HHHHHCCCEEHHHHHHHHH
Q ss_conf 9998388852334799998
Q gi|254781020|r 275 KSIILGASLGGLASPFLKP 293 (337)
Q Consensus 275 kAlalGAdaV~iGr~~l~~ 293 (337)
+++..|+++|.+|++|.+.
T Consensus 220 ~l~~~g~~gv~~g~a~~~~ 238 (257)
T PRK03220 220 PAVAAGADAVLAASVFHFG 238 (257)
T ss_pred HHHHCCCCEEEEHHHHHCC
T ss_conf 9997899799874687889
No 107
>PRK13126 consensus
Probab=97.91 E-value=0.00082 Score=40.82 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=79.0
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99987399717850478668899999997699799945888865100123102344323244310634688999998522
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC 256 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~ 256 (337)
.+.+..+...+. .+...++.+..+...+..-.+|.++-.|.++. ... ......+..+++..
T Consensus 117 ~~~~~~gl~~I~-lv~ptt~~~ri~~i~~~s~gfiYvs~~gvTG~-~~~-----------------~~~~~~i~~ir~~~ 177 (237)
T PRK13126 117 ELSREYGLAPSF-FIPSKFPHRLLRRLASLEPDFIYLGLYAATGI-ELP-----------------VYVERNVKTIRGLA 177 (237)
T ss_pred HHHHHCCCCEEE-EECCCCHHHHHHHHHHHCCCEEEEEEECCCCC-CCH-----------------HHHHHHHHHHHHHC
T ss_conf 999976997799-73899839999999985898799986526676-415-----------------67999999999857
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8987997298888899999998388852334799998414668999999999999999999808
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLG 320 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G 320 (337)
.++||..-=||++..|+.+++..|||.|-||++++..+..+.+...+++ +|||..+..+|
T Consensus 178 ~~~Pv~vGFGI~t~e~~~~~~~~~aDGvIVGSaiV~~i~~~~~~~~~~v----~~lr~al~el~ 237 (237)
T PRK13126 178 GDVYLVAGFAIDSPEKAARLVKAGADGVVVGTAFMRRLSSSVEEALSFL----KEIRGALSELG 237 (237)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHH----HHHHHHHHHCC
T ss_conf 8997799945399999999986489999987899999997559999999----99999998559
No 108
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=97.90 E-value=0.00095 Score=40.44 Aligned_cols=233 Identities=16% Similarity=0.099 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHEEECCCCC-CCCHHH----CCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHH
Q ss_conf 99985302558974756886303245578-998101----7462998989625686850126633430002569999999
Q gi|254781020|r 9 HINIVCKDPGIDRNKKFFDDWHLIHRALP-EISFDE----VDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAA 83 (337)
Q Consensus 9 ~i~~a~~e~~~~~n~~~fd~~~l~p~~l~-~~~~~~----vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa 83 (337)
-|...-.+...++..-.|+++.=.-+..| .+|... .+--.-|.-.|-.+| |-|........ ..+|+.-
T Consensus 7 Iiag~redva~R~~~vpl~~lk~~a~~~p~prd~~~aL~~~~g~~vIAEiKraSP------SkG~I~~~~dp-~~iA~~Y 79 (695)
T PRK13802 7 LVAGALEDQRTRELTVSLEDVKKAALAAPAPIDATRWLKRADGIPVIAEIKRASP------SKGHLSDIPDP-AALAREY 79 (695)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEEEECCCC------CCCCCCCCCCH-HHHHHHH
T ss_conf 9986899999987359999999998509998278999606899759998606999------87876888999-9999999
Q ss_pred HHHCCEEECCCCHH-HHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHH
Q ss_conf 98099066052022-11286688899999866401232202752123679989999877650898576253203566520
Q gi|254781020|r 84 EKTKVAMAVGSQRV-MFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQP 162 (337)
Q Consensus 84 ~~~g~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (337)
.+.|.. ++|-... .++.-...+...++ .....++ ..++.-.+.-.+.++. ..++|++-+-.....
T Consensus 80 e~~GA~-aISVLTe~~~F~Gsl~dL~~vr-~~v~lPv------LRKDFIvD~yQI~EAr-~~GADaILLIva~L~----- 145 (695)
T PRK13802 80 EKGGAS-AISVLTEGRKFLGSLDDFDKVR-AAVHIPV------LRKDFIVTDYQIFEAR-AHGADLVLLIVAALD----- 145 (695)
T ss_pred HHCCCE-EEEEECCCCCCCCCHHHHHHHH-HHCCCCE------EECCEECCHHHHHHHH-HCCCCHHHHHHHHCC-----
T ss_conf 987984-9998258676798999999999-8589985------7023306399999999-828788999998669-----
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCC
Q ss_conf 68852430799999999873997178504786688999999976997999458888651001231023443232443106
Q gi|254781020|r 163 NGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWG 242 (337)
Q Consensus 163 ~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~g 242 (337)
......+-.+...++..+++- +.+.+.+.++.++|++.|-|-|+.=.+... -
T Consensus 146 ------~~~L~~l~~~a~~LGm~~LVE----VH~~~El~rAl~~ga~iIGINnRnL~Tf~v------------------D 197 (695)
T PRK13802 146 ------DAQLKHLLDLAHELNMTVLVE----THTREEIERARKAGAKVIGINARNLKNLKV------------------D 197 (695)
T ss_pred ------HHHHHHHHHHHHHCCCEEEEE----ECCHHHHHHHHHCCCCEEEEECCCCCCCEE------------------C
T ss_conf ------999999999999869917999----789999999984799989987898864228------------------7
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 34688999998522898799729888889999999838885233479999
Q gi|254781020|r 243 IPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 243 i~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
+.....|.. .+=.++-.++-+||++..|+...-..|||+|.||-++..
T Consensus 198 ~~~~~~Lap--~iP~~~v~VAESGI~~~~Dv~~~a~aGadAvLVGEalvt 245 (695)
T PRK13802 198 VNKYNELAA--DLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVAT 245 (695)
T ss_pred HHHHHHHHH--HCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHC
T ss_conf 799999984--689985799568999989999999779999997803415
No 109
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.89 E-value=0.0015 Score=39.22 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=34.7
Q ss_pred HHHHHHHCCCCEEEECCCCC-CHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 99998522898799729888-88999999983888523347999
Q gi|254781020|r 249 LEMARPYCNEAQFIASGGLR-NGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 249 l~~~~~~~~~v~IiadGGIr-~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+........+++++..|||. +-..+-..|..|+.+|++|+.+.
T Consensus 150 lkal~~p~p~~~~~PtGGV~ps~~N~~~~l~ag~~~vG~GS~l~ 193 (223)
T PRK07114 150 VKAIKGPMPWTSIMPTGGVEPTEENLKSWFKAGATCVGMGSKLF 193 (223)
T ss_pred HHHHHCCCCCCCEEECCCCCCCHHHHHHHHHCCCEEEEECHHHC
T ss_conf 99984649999688799988735509999968997999884638
No 110
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.88 E-value=0.0016 Score=39.08 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=117.9
Q ss_pred CCHHHHCCHHH-HHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHH
Q ss_conf 20221128668-88999998664012322027521236799899998776508985762532035665206885243079
Q gi|254781020|r 94 SQRVMFSDHNA-IKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLS 172 (337)
Q Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (337)
+.++++...++ .....+++..|+..+++... ..+.+--+...+. ..++|...+---.+ -+...
T Consensus 34 E~GTPLIk~eG~~aV~~lr~~fP~~~ivAD~K----tmDaG~~Ea~~A~-~AGADivtVlG~a~-----------d~TI~ 97 (429)
T PRK07028 34 EAGTPLIKSEGMNAIRTLRKNFPDLTIVADMK----TMDTGAMEVEMAA-KAGADVVCILGVAD-----------DSTIA 97 (429)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEEEE----ECCCCHHHHHHHH-HCCCCEEEEECCCC-----------HHHHH
T ss_conf 91768888641899999998789986988764----0455088999998-76998899945788-----------36999
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 99999998739971785047866889999999769979994588886510012310234432324431063468899999
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
+.++..+ ..+..+.+-++......+-++.+.+.|+|.|.+--.- + ..-.|..+++.|..+
T Consensus 98 ~aV~aA~-k~G~~v~vDlI~v~d~~~ra~el~~lGvd~I~vH~G~-----D--------------~Q~~g~~p~~~l~~v 157 (429)
T PRK07028 98 DAVRAAR-KYGVLVMADLINVPDPVKRAVELEELGVDIINVHVGI-----D--------------QQMLGKDPLELLKKV 157 (429)
T ss_pred HHHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEEEE-----C--------------HHHCCCCHHHHHHHH
T ss_conf 9999999-7098899985589988999999997099889997623-----3--------------553179849999999
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 852289879972988888999999983888523347999984-------------1466899999999999999999980
Q gi|254781020|r 253 RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA-------------MDSSDAVVAAIESLRKEFIVSMFLL 319 (337)
Q Consensus 253 ~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~-------------~~G~~gv~~~l~~l~~el~~~m~~~ 319 (337)
.+. -++||-..|||.. ..+-+++.+|||-|-+|++...+. ..++.....+=..+.+|++..+.+.
T Consensus 158 ~~~-~~~~vAVAGGi~~-~t~~~~v~~GAdIvIVGgaI~~a~dp~~aAr~ir~ai~~~~~~~~~~~~~~~~~~~~~~~~v 235 (429)
T PRK07028 158 SEE-VSIPIAAAGGLDA-ETAVKAVEAGADIVIVGGNIYKSADVTGAARDIREALDSPPVPTDKFKKSLDEEIRELFKEV 235 (429)
T ss_pred HHH-CCCEEEEECCCCH-HHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 975-5971899668787-76999997599899989400579997999999999973767676520022389999999851
Q ss_pred CCCCHHHHH
Q ss_conf 898578961
Q gi|254781020|r 320 GTKRVQELY 328 (337)
Q Consensus 320 G~~~i~el~ 328 (337)
...||+|-.
T Consensus 236 s~~n~sdam 244 (429)
T PRK07028 236 STSNISDAM 244 (429)
T ss_pred CCCCCCHHH
T ss_conf 887611566
No 111
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.87 E-value=0.00024 Score=43.95 Aligned_cols=88 Identities=16% Similarity=0.047 Sum_probs=53.3
Q ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 8999999976997999458--88865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~ 274 (337)
.+.++.+.+.|+..+++.. .-|+ ..++ -...+..+.+. .++|||+.||+++-.|+.
T Consensus 148 ~~~i~~~~~~G~~eii~tdI~~DGt------------------~~G~---d~~l~~~i~~~-~~ipviasGGv~s~~Di~ 205 (241)
T PRK00748 148 EDLAKRFEDAGVAAIIYTDISRDGT------------------LSGP---NVELTRELAAA-TPIPVIASGGVSSLDDIR 205 (241)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCC------------------CCCC---CHHHHHHHHHH-CCCCEEEECCCCCHHHHH
T ss_conf 9999999855875699988705685------------------4768---99999999986-899899988999999999
Q ss_pred HHHHH---CCCEEHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99983---8885233479999841466899999999999
Q gi|254781020|r 275 KSIIL---GASLGGLASPFLKPAMDSSDAVVAAIESLRK 310 (337)
Q Consensus 275 kAlal---GAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~ 310 (337)
+.-.+ |.+.|-+|+++... .=-++..+.+|+.
T Consensus 206 ~L~~~~~~gv~gviiG~Aly~g----~i~l~eal~~~~~ 240 (241)
T PRK00748 206 ALKALGPEGVEGVIVGKALYEG----KFDLAEALACWQN 240 (241)
T ss_pred HHHHCCCCCCCEEEEEHHHHCC----CCCHHHHHHHHHC
T ss_conf 9986031792489987898779----9899999998652
No 112
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.87 E-value=0.00018 Score=44.67 Aligned_cols=75 Identities=17% Similarity=0.042 Sum_probs=50.0
Q ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 8999999976997999458--88865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~ 274 (337)
.+.++.+.+.|+..+++-. +-|+. .++-+ ..+...... .++|+++.||+++-.|+.
T Consensus 149 ~~~i~~~~~~g~geiilt~i~~dGt~------------------~G~d~---~ll~~i~~~-~~~p~i~~GGv~s~~di~ 206 (234)
T cd04732 149 EELAKRFEELGVKAIIYTDISRDGTL------------------SGPNF---ELYKELAAA-TGIPVIASGGVSSLDDIK 206 (234)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCC------------------CCCCH---HHHHHHHHH-CCCCEEEEECCCCHHHHH
T ss_conf 99999997458646998764256653------------------56899---999999865-799899981899999999
Q ss_pred HHHHHCCCEEHHHHHHHHH
Q ss_conf 9998388852334799998
Q gi|254781020|r 275 KSIILGASLGGLASPFLKP 293 (337)
Q Consensus 275 kAlalGAdaV~iGr~~l~~ 293 (337)
+..-+|++.|.+|+++...
T Consensus 207 ~l~~~g~~gvivgsAlh~g 225 (234)
T cd04732 207 ALKELGVAGVIVGKALYEG 225 (234)
T ss_pred HHHHCCCCEEEEEHHHHCC
T ss_conf 9997799899998898779
No 113
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.86 E-value=0.0016 Score=39.05 Aligned_cols=125 Identities=20% Similarity=0.259 Sum_probs=76.3
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC--CCCEEEEECCCCC-CH----HHHHHHHHCC
Q ss_conf 999987765089857625320356652068852430799999999873--9971785047866-88----9999999769
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM--DVPLLLKEVGCGL-SS----MDIELGLKSG 207 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~~pii~k~v~~~~-~~----~~~~~a~~aG 207 (337)
.+.+++.+ .+++.+.+.++..... ...+....+.++.+++.. +.|+.+-.-.... +. ..++.+.++|
T Consensus 69 ~e~~~ai~-~GAdeid~v~~~~~~~-----~~~~~~~~~ei~~v~~~~~~g~~~kvi~e~~~l~~~~~i~~a~~~~~~~G 142 (201)
T cd00945 69 AEVEEAID-LGADEIDVVINIGSLK-----EGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG 142 (201)
T ss_pred HHHHHHHH-HCCCEEEEECCHHHHH-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999-0999899740567775-----66889999999999997357983799961677899999999999999809
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 9799945888865100123102344323244310634688999998-522898799729888889999999838885233
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
+|+|--+..-+...+ .++++..++ ..+++++|.+.|||++..++..+|.+||+.++.
T Consensus 143 adfvKtstG~~~~~a----------------------t~~~v~~m~~~~~~~~~vk~sGGi~~~~~a~~~l~aGa~~igt 200 (201)
T cd00945 143 ADFIKTSTGFGGGGA----------------------TVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CCEEEECCCCCCCCC----------------------CHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 987985588788989----------------------9999999999828786386358979999999999828653537
Q ss_pred H
Q ss_conf 4
Q gi|254781020|r 287 A 287 (337)
Q Consensus 287 G 287 (337)
+
T Consensus 201 s 201 (201)
T cd00945 201 S 201 (201)
T ss_pred C
T ss_conf 8
No 114
>pfam04898 Glu_syn_central Glutamate synthase central domain. The central domain of glutamate synthase connects the amino terminal amidotransferase domain with the FMN-binding domain and has an alpha / beta overall topology. This domain appears to be a rudimentary form of the FMN-binding TIM barrel according to SCOP.
Probab=97.86 E-value=0.00019 Score=44.57 Aligned_cols=115 Identities=18% Similarity=0.241 Sum_probs=81.5
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH------HHHCCCCEE-EECCCCCCH
Q ss_conf 9999999769979994588886510012310234432324431063468899999------852289879-972988888
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA------RPYCNEAQF-IASGGLRNG 270 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~------~~~~~~v~I-iadGGIr~g 270 (337)
+.+..+++.|+..+++|-.+- .. .-..||.+.|+-.+ ...+.++.| +-+|-+|.-
T Consensus 147 ~eA~~AV~~G~~ilILSDr~~------------~~------~~~~IP~LLAvsaVHh~Lir~glR~~~sIVVeSge~re~ 208 (288)
T pfam04898 147 EEAEEAVRSGATIIVLSDRNL------------DE------ERVAIPALLAVGAVHHHLIRKGLRTKVSLVVETGEAREV 208 (288)
T ss_pred HHHHHHHHCCCCEEEECCCCC------------CC------CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCH
T ss_conf 999999985998899468888------------86------534431899999999999974865455168873442458
Q ss_pred HHHHHHHHHCCCEEHHHHHHHH-H-----H-------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
Q ss_conf 9999999838885233479999-8-----4-------146689999999999999999998089857896149600
Q gi|254781020|r 271 VDILKSIILGASLGGLASPFLK-P-----A-------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTAL 333 (337)
Q Consensus 271 ~Dv~kAlalGAdaV~iGr~~l~-~-----~-------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 333 (337)
-|++-.+..||++|. |+|- . . ..-.+.+.++...+...|.-.|+.+|-.+|+..|+...|
T Consensus 209 Hh~A~LiGyGA~AV~---PYLa~eti~~~~~~~~~~~~~~~~~~~ny~kai~kGllKImSKMGIStl~SY~GaqiF 281 (288)
T pfam04898 209 HHFAVLIGYGASAIN---PYLAYETIRDLHRRGLLKELSLEEAVKNYRKAIEKGLLKIMSKMGISTLQSYRGAQIF 281 (288)
T ss_pred HHHHHHHHCCCCCCC---HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHH
T ss_conf 787888737740017---7999999999997489889999999999999998448999830127677515560130
No 115
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.84 E-value=5.8e-05 Score=47.59 Aligned_cols=37 Identities=30% Similarity=0.214 Sum_probs=33.6
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HHCCCEEHHHHHHHHH
Q ss_conf 898799729888889999999-8388852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSI-ILGASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAl-alGAdaV~iGr~~l~~ 293 (337)
.++|||+.||+.+-.|+.+++ ..|+++|.+|+.|.|-
T Consensus 195 ~~ipiIasGGi~s~~di~~l~~~~~v~gv~~gs~F~f~ 232 (253)
T PRK01033 195 VKIPVTALGGAGSLDDIADLIQEAGASAAAAGSLFVFK 232 (253)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEEEEC
T ss_conf 89999997898999999999986797399783168984
No 116
>PRK02621 consensus
Probab=97.83 E-value=0.0005 Score=42.09 Aligned_cols=37 Identities=32% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHHH
Q ss_conf 898799729888889999999838-8852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~~ 293 (337)
.++|||+.||+.+..|+.+++..+ +++|.+|++|.+.
T Consensus 197 ~~iPvi~sGGi~s~edi~~~l~~~~v~gvivG~al~~~ 234 (254)
T PRK02621 197 VEIPVIASGGAGCCDHIAEALTEGKAEAALLASLLHYG 234 (254)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCC
T ss_conf 79979997799999999999985898198775787889
No 117
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.82 E-value=0.00061 Score=41.56 Aligned_cols=123 Identities=21% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC--CCCCCHH----HHHHHHHCC
Q ss_conf 8999987765089857625320356652068852430799999999873997178504--7866889----999999769
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV--GCGLSSM----DIELGLKSG 207 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v--~~~~~~~----~~~~a~~aG 207 (337)
..+.+++.+ .|++-+.+-++...-. ..++....+.++.+++.... ..+|-+ ....+.+ ..+.++++|
T Consensus 72 ~~E~~~ai~-~GAdEiD~Vin~~~~~-----~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aG 144 (203)
T cd00959 72 VAEAREAIA-DGADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACGG-APLKVILETGLLTDEEIIKACEIAIEAG 144 (203)
T ss_pred HHHHHHHHH-CCCCEEEEECCHHHHH-----CCHHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 999999998-2998777512399996-----07099999999999876288-8269997446599999999999999829
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 97999458888651001231023443232443106346889999-9852289879972988888999999983888523
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM-ARPYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~-~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
+|+|--|..-+...++ ++.+.. ...+++++.|=++||||+..++.+.|.+||+-++
T Consensus 145 adfvKTSTG~~~~gat----------------------~e~v~~m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~riG 201 (203)
T cd00959 145 ADFIKTSTGFGPGGAT----------------------VEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGATRIG 201 (203)
T ss_pred CCEEEECCCCCCCCCC----------------------HHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHEE
T ss_conf 7889715886889989----------------------99999999983878607715897999999999981841221
No 118
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.80 E-value=0.0022 Score=38.28 Aligned_cols=125 Identities=13% Similarity=0.137 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899999997699799
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
.+..++.++. ..|+|++-+-..... ......+-......+..+++- +.+.++..++.+++++.|
T Consensus 112 id~~QI~ea~-~~GADaILLIaa~L~-----------~~~l~~l~~~A~~lGle~LvE----vH~~~El~~al~~~~~iI 175 (247)
T PRK13957 112 LDEIQIREAR-AFGASAILLIVRILT-----------PSQIKSFLKHASSLGMDVLVE----VHTEDEAKLALDCGAEII 175 (247)
T ss_pred CCHHHHHHHH-HCCCCEEHHHHHCCC-----------HHHHHHHHHHHHHHCCEEEEE----ECCHHHHHHHHHCCCCEE
T ss_conf 6499999999-739985126885089-----------999999999999838815625----589999999984899889
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 94588886510012310234432324431063468899999852289879972988888999999983888523347999
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
-|-|+.=.++.. -+.....|.. ..-.++.+++-+||.+..|+-. +.-++|+|.||+.++
T Consensus 176 GINNRnL~tf~v------------------d~~~~~~l~~--~ip~~~~~VsESGI~~~~di~~-l~~~~da~LIGeslM 234 (247)
T PRK13957 176 GINTRDLDTFQI------------------HQNLVEEVAA--FLPPNIVKVGESGIESRSDLDK-FRKLVDAALIGTYFM 234 (247)
T ss_pred EEECCCCCCCCC------------------CHHHHHHHHH--HCCCCCEEEECCCCCCHHHHHH-HHHHCCEEEECHHHH
T ss_conf 874577321463------------------9889999984--3899987996789999999999-997399999886775
Q ss_pred HH
Q ss_conf 98
Q gi|254781020|r 292 KP 293 (337)
Q Consensus 292 ~~ 293 (337)
..
T Consensus 235 k~ 236 (247)
T PRK13957 235 EK 236 (247)
T ss_pred CC
T ss_conf 69
No 119
>PRK05211 consensus
Probab=97.79 E-value=0.00055 Score=41.86 Aligned_cols=37 Identities=27% Similarity=0.191 Sum_probs=33.0
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HHCCCEEHHHHHHHHH
Q ss_conf 898799729888889999999-8388852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSI-ILGASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAl-alGAdaV~iGr~~l~~ 293 (337)
.++|||++||+.+-.|+.+++ -.|+++|.+|++|.+.
T Consensus 191 ~~iPvIasGGv~s~~di~~~~~~~~~~gvi~gs~~~~~ 228 (248)
T PRK05211 191 CHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQ 228 (248)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 69999998888999999999986798413304888889
No 120
>PRK02145 consensus
Probab=97.78 E-value=0.00059 Score=41.65 Aligned_cols=36 Identities=31% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 898799729888889999999838-885233479999
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
.++|||+.||+.+..|+.+++-.| +++|..|+.|.+
T Consensus 200 ~~ipvIasGGi~s~~di~~~~~~~~~~av~~g~~~~~ 236 (257)
T PRK02145 200 VPVPVIASGGVGSLQHLADGITEGHADAVLAASIFHY 236 (257)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 6998999868999999999998089848765326777
No 121
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.78 E-value=0.00061 Score=41.57 Aligned_cols=74 Identities=20% Similarity=0.078 Sum_probs=47.9
Q ss_pred HHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 999999976997999458--888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
+.++.+.+.|+.-|.+.. +-|+. .+. -+..+..... ..++|||+.||+.+-.|+.+
T Consensus 157 ~~i~~~~~~g~geil~tdI~rDG~~------------------~G~---d~~l~~~i~~-~~~iPiI~sGGv~s~~di~~ 214 (253)
T PRK02083 157 EWAKEVQELGAGEILLTSMDQDGTK------------------NGY---DLELTRAVRD-AVSVPVIASGGAGNLEHFAE 214 (253)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCC------------------CCC---CHHHHHHHHH-HCCCCEEEECCCCCHHHHHH
T ss_conf 9999987569878999988555866------------------788---9999999997-57999999889999999999
Q ss_pred HH-HHCCCEEHHHHHHHHH
Q ss_conf 99-8388852334799998
Q gi|254781020|r 276 SI-ILGASLGGLASPFLKP 293 (337)
Q Consensus 276 Al-alGAdaV~iGr~~l~~ 293 (337)
++ -.|.++|.+|++|.+.
T Consensus 215 ~l~~~~i~gv~~G~~~~~~ 233 (253)
T PRK02083 215 AFTEGGADAALAASVFHFG 233 (253)
T ss_pred HHHHCCCEEEEEHHHHHCC
T ss_conf 9986798099871277769
No 122
>PRK13117 consensus
Probab=97.78 E-value=0.0024 Score=38.04 Aligned_cols=163 Identities=13% Similarity=0.133 Sum_probs=97.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-...+.+...+.....+.+++.+ ++.|.+. .+.+.......+..++. ++...++.+-++...
T Consensus 102 Y~N~i~~~G~e~F~~~~~~aGvdGvIi-pDLP~eE------------~~~~~~~~~~~gl~~I~-lv~Ptt~~~Ri~~i~ 167 (268)
T PRK13117 102 YANLVFANGIDNFYARCAEAGVDSVLI-ADVPVEE------------SAPFRQAAKKHGIAPIF-ICPPNADDDTLRQIA 167 (268)
T ss_pred CCCHHHHCCHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHH
T ss_conf 262898717999999999769877985-7999788------------58999999867983799-847999999999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
+..-.+|..-..-|.|+..... .-.....+..+++. .++||..-=||++..|+-+++..|||.|
T Consensus 168 ~~a~GFiY~vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGv 231 (268)
T PRK13117 168 SLGRGYTYLLSRAGVTGAENKA---------------AAPLNHLVEKLKEY-NAPPPLQGFGISEPEQVKAAIKAGAAGA 231 (268)
T ss_pred HHCCCEEEEEECCCCCCCCCCC---------------CHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHCCCCEE
T ss_conf 7479859998367778898666---------------27799999999964-7998699837899999999986389989
Q ss_pred HHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 3347999984146---68999999999999999999
Q gi|254781020|r 285 GLASPFLKPAMDS---SDAVVAAIESLRKEFIVSMF 317 (337)
Q Consensus 285 ~iGr~~l~~~~~G---~~gv~~~l~~l~~el~~~m~ 317 (337)
-+|++++..+.++ ++-+...+..+..+|+..+.
T Consensus 232 IVGSaiV~~i~~~~~~~~~~~~~v~~~v~~Lk~a~k 267 (268)
T PRK13117 232 ISGSAIVKIIEKNLDNPEKMLAELAEFVRAMKAATK 267 (268)
T ss_pred EECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 987899999987166889999999999999999864
No 123
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.76 E-value=0.00056 Score=41.79 Aligned_cols=37 Identities=27% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HHCCCEEHHHHHHHHH
Q ss_conf 898799729888889999999-8388852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSI-ILGASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAl-alGAdaV~iGr~~l~~ 293 (337)
.++|||+.||+.+-.|+.+++ ..|+++|.+|++|.+.
T Consensus 192 ~~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~~~ 229 (243)
T cd04731 192 VNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHHCC
T ss_conf 89999998899999999999987898299882276769
No 124
>PRK13127 consensus
Probab=97.76 E-value=0.0026 Score=37.86 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=100.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-...+.+...+.....+.+++.+ ++.|.+. .+.+.......+..++. ++...++.+.++..
T Consensus 94 ~Y~N~i~~~G~e~F~~~~~~~GvdGlIi-pDLP~eE------------~~~~~~~~~~~gi~~I~-lvaPtt~~~Ri~~i 159 (262)
T PRK13127 94 TYYNPVYRYGVEKFVKKAAEAGVSGLII-PDLPVEE------------ATDLREACKKHGLDLVF-LVAPTTPEERLKRI 159 (262)
T ss_pred ECCHHHHHCCHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCEEEE-EECCCCCHHHHHHH
T ss_conf 6613887608999999998759976996-6999789------------99999999855832799-85899989999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.+..-.+|..-..-|.|+.... ........+..+++. .+.||..-=||++..|+.+++..|||.
T Consensus 160 ~~~a~gFiY~vs~~GvTG~~~~---------------~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~~aDG 223 (262)
T PRK13127 160 DEASSGFVYLVSRLGVTGARED---------------VEEATFDLLKRARTT-CKNKIAVGFGISKGEHAEELLDAGADG 223 (262)
T ss_pred HHCCCCEEEEEECCCCCCCCCC---------------CHHHHHHHHHHHHHC-CCCCEEEEEEECCHHHHHHHHHCCCCE
T ss_conf 8438981899843555687655---------------528899999999961-799848993348899999998649999
Q ss_pred EHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHH
Q ss_conf 233479999841466--89999999999999999998
Q gi|254781020|r 284 GGLASPFLKPAMDSS--DAVVAAIESLRKEFIVSMFL 318 (337)
Q Consensus 284 V~iGr~~l~~~~~G~--~gv~~~l~~l~~el~~~m~~ 318 (337)
|-+|++++..+.++. +-..+.+..+..||+..+..
T Consensus 224 vIVGSaiv~~i~~~~~~~~~~~~v~~~~~~lk~ai~~ 260 (262)
T PRK13127 224 VIVGSALVDIIAEGGDNEEVADRLEELARELKSGIKR 260 (262)
T ss_pred EEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9987899999996699789999999999999999856
No 125
>PRK06857 consensus
Probab=97.76 E-value=0.0014 Score=39.53 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=66.8
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC---
Q ss_conf 77650898576253203566520688524307999999998739971785047866889999999769979994588---
Q gi|254781020|r 140 AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR--- 216 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~--- 216 (337)
+....+...+++++..+. ..+.++.+++..+. +..++|++.+.+.++.+.++|+++++--+.
T Consensus 32 al~~gGi~~iEiTlrt~~-------------a~~~I~~l~~~~p~--~~vGaGTV~~~e~~~~a~~aGA~FiVSP~~~~~ 96 (209)
T PRK06857 32 VLAENGLPVAEITFRSAA-------------AAEAIRLLREAYPD--MLIGAGTVLTPEQVDAAKEAGADFIVSPGFNPN 96 (209)
T ss_pred HHHHCCCCEEEEECCCCC-------------HHHHHHHHHHHCCC--CEEEEEECCCHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 999879988999589932-------------99999999975899--489999376799999999839999990899999
Q ss_pred --------------CCCCCCCHHHHCCCCCCC---CHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf --------------886510012310234432---324431063468899999852289879972988888999999983
Q gi|254781020|r 217 --------------GGTSWSRIESHRDLESDI---GIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIIL 279 (337)
Q Consensus 217 --------------gG~~~~~~~~~r~~~~~~---~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlal 279 (337)
|..|-..+....+..-.. ++.....|+. -+...+....+++++..|||.- ..+-..|.+
T Consensus 97 v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~gG~~---~lkal~~p~p~~~~~ptGGV~~-~N~~~yl~~ 172 (209)
T PRK06857 97 TVKYCQQLNIPIVPGVNNPSLVEQALEMGLTTLKFFPAEASGGVN---MLKALLAPYPNLQIMPTGGINP-SNIKDYLAI 172 (209)
T ss_pred HHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCHH---HHHHHHCCCCCCEEEECCCCCH-HHHHHHHCC
T ss_conf 999999749965478799999999998799989978662126699---9999865389980996489888-789999859
Q ss_pred CCCEEHHHHHHH
Q ss_conf 888523347999
Q gi|254781020|r 280 GASLGGLASPFL 291 (337)
Q Consensus 280 GAdaV~iGr~~l 291 (337)
|+-++..|+++.
T Consensus 173 ~~v~~~gGS~l~ 184 (209)
T PRK06857 173 PNVVACGGTWMV 184 (209)
T ss_pred CCEEEEECHHHC
T ss_conf 988999893658
No 126
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.75 E-value=0.0012 Score=39.83 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=48.1
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 78668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 192 GCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
+.+.++.++..+.++|++.+.+.-.. ..|.. .+...+.....++++..|||-- .
T Consensus 102 PGv~TpsEi~~A~~~G~~~vK~FPa~----------------------~~G~~---~lkal~~pfp~~~~~ptGGI~~-~ 155 (190)
T cd00452 102 PGVATPTEIMQALELGADIVKLFPAE----------------------AVGPA---YIKALKGPFPQVRFMPTGGVSL-D 155 (190)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCC----------------------CCCHH---HHHHHHCCCCCCCEEEECCCCH-H
T ss_conf 78799999999998799989989551----------------------14999---9999855489993899679998-8
Q ss_pred HHHHHHHHCCCEEHHHHHHH
Q ss_conf 99999983888523347999
Q gi|254781020|r 272 DILKSIILGASLGGLASPFL 291 (337)
Q Consensus 272 Dv~kAlalGAdaV~iGr~~l 291 (337)
++...|.+|+.+|++|..+-
T Consensus 156 N~~~yl~~gv~avG~g~~l~ 175 (190)
T cd00452 156 NAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHCCCEEEEECHHCC
T ss_conf 89999968998999541258
No 127
>PRK08104 consensus
Probab=97.74 E-value=0.0018 Score=38.74 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=46.8
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 78668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 192 GCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
+.+.++.++..+.++|++.+.+.=.. .-.|+ ..+...+....+++++..|||- -.
T Consensus 113 PGv~TpsEi~~A~~~G~~~vKlFPA~---------------------~~gG~---~~lkal~~p~p~~~f~ptGGV~-~~ 167 (212)
T PRK08104 113 PGISTVSELMLGMDYGLTEFKFFPAE---------------------ANGGV---KALQAISGPFSQIRFCPTGGIT-PA 167 (212)
T ss_pred CCCCCHHHHHHHHHCCCCEEEECCCC---------------------CCCCH---HHHHHHHCCCCCCEEEECCCCC-HH
T ss_conf 67699999999998799979978762---------------------13749---9999985558998189648989-88
Q ss_pred HHHHHHHHCCCEEHHHHHHH
Q ss_conf 99999983888523347999
Q gi|254781020|r 272 DILKSIILGASLGGLASPFL 291 (337)
Q Consensus 272 Dv~kAlalGAdaV~iGr~~l 291 (337)
.+-..|.+|+-++..|+.+.
T Consensus 168 N~~~yl~~~~v~~vgGS~l~ 187 (212)
T PRK08104 168 NYRDYLALKSVLCIGGSWLV 187 (212)
T ss_pred HHHHHHHCCCEEEEECHHHC
T ss_conf 99999807987999883538
No 128
>PRK08904 consensus
Probab=97.72 E-value=0.002 Score=38.57 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=31.3
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 9852289879972988888999999983888523347999
Q gi|254781020|r 252 ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 252 ~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
.+....+++++..||| +...+-+.|++|+-++..|+.+.
T Consensus 144 l~~pfp~i~~~pTGGV-~~~N~~~yl~~~~v~~vgGS~l~ 182 (207)
T PRK08904 144 LYGPYADVRFCPTGGI-SLATAPEYLALPNVLCVGGSWLT 182 (207)
T ss_pred HHCCCCCCEEEECCCC-CHHHHHHHHHCCCEEEEECHHHC
T ss_conf 7465999808865898-98789999818984999881438
No 129
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.71 E-value=0.00088 Score=40.62 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=75.7
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHH---HHHHHHHCCCCEEEECCC
Q ss_conf 508985762532035665206885243079999999987399717850---47866889---999999769979994588
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE---VGCGLSSM---DIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~---v~~~~~~~---~~~~a~~aGad~i~v~~~ 216 (337)
..+++-+.+-++... .. ...+..+...++.+++..+.+.++|- .+.-++.+ ..+.++++|+|+|-=|..
T Consensus 88 ~~GAdEiDmVinig~--~k---~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTG 162 (228)
T COG0274 88 ENGADEIDMVINIGA--LK---SGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTG 162 (228)
T ss_pred HCCCCEEEEEEEHHH--HH---CCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCC
T ss_conf 849970256400899--83---6988999999999999828774489997425569799999999999958998984778
Q ss_pred CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH-HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 886510012310234432324431063468899-9998522898799729888889999999838885233479
Q gi|254781020|r 217 GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL-EMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 217 gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al-~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
.....++ ++.+ +..+.++.++-|=++|||||..|+.+.+-+||+-++..+.
T Consensus 163 f~~~gAT----------------------~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~ 214 (228)
T COG0274 163 FSAGGAT----------------------VEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSG 214 (228)
T ss_pred CCCCCCC----------------------HHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 7898987----------------------999999999856571053268848899999999975787244648
No 130
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.71 E-value=0.0031 Score=37.45 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=92.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+ ++.|.+. .+.+....+..+..++. ++...++.+..+...
T Consensus 99 Y~N~i~~yG~e~F~~~~~~~GvdGlIi-pDLP~eE------------~~~~~~~~~~~gl~~I~-lvaPtt~~~Ri~~i~ 164 (263)
T CHL00200 99 YYNPVLHYGINKFIKKISQAGVKGLII-PDLPYEE------------SDYLISVCNLYNIELIL-LIAPTSSKSRIQKIA 164 (263)
T ss_pred EHHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHH
T ss_conf 206888738899999999849986874-7999788------------89999999855862166-647899699999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
+..-.+|..-.+-|.|+.... . . -.....+..+++. .++||..-=||++..||-+....|||.|
T Consensus 165 ~~a~GFiY~vs~~GvTG~~~~-----~--------~--~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDGv 228 (263)
T CHL00200 165 RAAPGCIYLVSTTGVTGLKTE-----L--------D--KKLKKLIETIKKM-TNKPIILGFGISTSEQIKQIKGWNINGI 228 (263)
T ss_pred HHCCCCEEEEECCCCCCCCCC-----C--------H--HHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 728980898533655687544-----5--------1--8799999999973-6998487358799999999974599999
Q ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 3347999984146-689999999999999999
Q gi|254781020|r 285 GLASPFLKPAMDS-SDAVVAAIESLRKEFIVS 315 (337)
Q Consensus 285 ~iGr~~l~~~~~G-~~gv~~~l~~l~~el~~~ 315 (337)
-||++++..+.+. ++...+.+..+..+||..
T Consensus 229 IVGSaiV~~i~~~~~~~~~~~i~~f~~~lk~a 260 (263)
T CHL00200 229 VIGSACVQILLGSSPEKGLDQLSEFCKVAKKS 260 (263)
T ss_pred EECHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 98789999998559076899999999999999
No 131
>PRK01659 consensus
Probab=97.69 E-value=0.0008 Score=40.89 Aligned_cols=37 Identities=27% Similarity=0.180 Sum_probs=32.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHHH
Q ss_conf 898799729888889999999838-8852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~~ 293 (337)
.++|||+.||+.+..|+.+++-.+ +++|.+|+.|.+.
T Consensus 196 ~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~~~~~ 233 (252)
T PRK01659 196 VSVPVIASGGAGNADHMVEVFQKTTADAALAASIFHYG 233 (252)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 89999999179999999999974898265575477779
No 132
>PRK08782 consensus
Probab=97.67 E-value=0.0035 Score=37.07 Aligned_cols=137 Identities=15% Similarity=0.129 Sum_probs=67.5
Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC--
Q ss_conf 877650898576253203566520688524307999999998739971785047866889999999769979994588--
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR-- 216 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~-- 216 (337)
++.-..+...+++++..+ ...+.++.+++..+ -+..++|++.+.+.++.+.++|+++++--+.
T Consensus 36 eal~~gGi~~iEiTlrt~-------------~a~~~i~~l~~~~p--~~~vGaGTV~~~e~~~~a~~aGA~FiVSP~~~~ 100 (219)
T PRK08782 36 DALLEGGLPAIELTLRTP-------------VAIEALAMLKRELP--NIVIGAGTVLSERQLRQSVDAGADFLVTPGTPA 100 (219)
T ss_pred HHHHHCCCCEEEEECCCC-------------HHHHHHHHHHHHCC--CCEEEEEEECCHHHHHHHHHCCCCEEECCCCCH
T ss_conf 999987998799967993-------------39999999998689--947999970589999999984998998789979
Q ss_pred ---------------CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf ---------------88651001231023443232443106346889999985228987997298888899999998388
Q gi|254781020|r 217 ---------------GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGA 281 (337)
Q Consensus 217 ---------------gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGA 281 (337)
|..+-..+.......-..-..+=......+..+...+....+++++..|||- -..+-..|.+|+
T Consensus 101 ~v~~~a~~~~i~~iPGv~TpSEi~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~pfp~~~f~pTGGV~-~~N~~~yl~~~~ 179 (219)
T PRK08782 101 PLARLLADAPIPAVPGAATPTELLTLMGLGFRVCKLFPATAVGGLQMLKGLAGPLSELKLCPTGGIS-ETNAAEFLSQPN 179 (219)
T ss_pred HHHHHHHHCCCCEECCCCCHHHHHHHHHCCCCEEEECCCHHCCCHHHHHHHHCCCCCCEEEECCCCC-HHHHHHHHHCCC
T ss_conf 9999999819976478599999999998799989977732208499999984769998187679989-878999980799
Q ss_pred CEEHHHHHHH
Q ss_conf 8523347999
Q gi|254781020|r 282 SLGGLASPFL 291 (337)
Q Consensus 282 daV~iGr~~l 291 (337)
-.+..|+++.
T Consensus 180 v~~vgGS~l~ 189 (219)
T PRK08782 180 VLCIGGSWMV 189 (219)
T ss_pred EEEEECHHHC
T ss_conf 3999882538
No 133
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=97.66 E-value=0.00062 Score=41.52 Aligned_cols=132 Identities=18% Similarity=0.269 Sum_probs=86.9
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE------EECCCCCCHHHHHHH----HHCCCCEEE
Q ss_conf 5089857625320356652068852430799999999873997178------504786688999999----976997999
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLL------KEVGCGLSSMDIELG----LKSGIRYFD 212 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~------k~v~~~~~~~~~~~a----~~aGad~i~ 212 (337)
..|+|+..+|+|..-+. +...-.-+-.+...++.|+.|++. +.+-+-.+++....| .|.|||.|.
T Consensus 101 ~~GADAVS~HvNvGs~~-----e~d~~~~lg~vA~~ad~~GvPlLAMmYaRG~~i~~e~d~~~v~HAaRlg~ElGADvvK 175 (259)
T TIGR01949 101 RLGADAVSIHVNVGSDT-----EADQIEDLGDVAEIADDWGVPLLAMMYARGPRIDDEVDPEVVAHAARLGEELGADVVK 175 (259)
T ss_pred HCCCCEEEEEEECCCCC-----CHHHHHHHHHHHHHHHHCCCCHHECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 32898679988648987-----3899999989999886548842011278868876644767888887653534577665
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH--HH----HHHHHHHCCCEEHH
Q ss_conf 4588886510012310234432324431063468899999852289879972988888--99----99999838885233
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG--VD----ILKSIILGASLGGL 286 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g--~D----v~kAlalGAdaV~i 286 (337)
++=.|- . +...++.+.+ .+||+..||=++. .| |=-|+..||..|.+
T Consensus 176 ~~Y~Gd-----~----------------------~SF~~VV~~c-~~PVvvAGG~k~~s~~efLq~v~DA~~aGAAGvs~ 227 (259)
T TIGR01949 176 VPYTGD-----I----------------------DSFEEVVKAC-AVPVVVAGGPKLASDREFLQMVKDAMEAGAAGVSV 227 (259)
T ss_pred ECCCCC-----H----------------------HHHHHHHCCC-CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEC
T ss_conf 143177-----4----------------------6799996217-87778737779887467778899999818782310
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 47999984146689999999999
Q gi|254781020|r 287 ASPFLKPAMDSSDAVVAAIESLR 309 (337)
Q Consensus 287 Gr~~l~~~~~G~~gv~~~l~~l~ 309 (337)
||-..+- .-+-.+++.+..+.
T Consensus 228 GRnvFqh--~~p~~~~~Av~~iV 248 (259)
T TIGR01949 228 GRNVFQH--DTPVAITKAVSAIV 248 (259)
T ss_pred CCCCCCC--CCHHHHHHHHHHHC
T ss_conf 5630146--88789999998734
No 134
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=97.66 E-value=0.0021 Score=38.37 Aligned_cols=122 Identities=14% Similarity=0.175 Sum_probs=65.3
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99998776508985762532035665206885243079999999987399717850478668899999997699799945
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
..+.++ ...|+|++-+-...... .....+.......+..+++- +.+.++..++.++|++.|-|-
T Consensus 124 ~Qi~ea-~~~GAdaiLLI~~~L~~-----------~~l~~l~~~a~~lgl~~LvE----vh~~~el~~a~~~~~~iiGiN 187 (459)
T PRK09427 124 YQVYLA-RYYQADAILLMLSVLDD-----------EQYRQLAAVAHSLNMGVLTE----VSNEEELERAIALGAKVIGIN 187 (459)
T ss_pred HHHHHH-HHCCCCEEEEECCCCCH-----------HHHHHHHHHHHHHCCEEEEE----ECCHHHHHHHHHCCCCEEEEE
T ss_conf 999999-98099899987022899-----------99999999999829907999----689999999984899989987
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8888651001231023443232443106346889999985228987997298888899999998388852334799998
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
|+.=.+... -+.....|. ..+-.++.+++-+||++..|+...-.. +|++.||..++..
T Consensus 188 nRnL~tf~v------------------dl~~t~~l~--~~ip~~~~~vsESGI~~~~dv~~l~~~-~~~~LvGe~lmr~ 245 (459)
T PRK09427 188 NRNLRDLSI------------------DLNRTRELA--PLIPADVTVISESGIYTHAQVRELSPF-VNGFLIGSSLMAE 245 (459)
T ss_pred CCCCCCEEE------------------CHHHHHHHH--HHCCCCCEEEECCCCCCHHHHHHHHHH-CCEEEECHHHHCC
T ss_conf 898862148------------------779999999--768999749973799999999999843-9999978587579
No 135
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.61 E-value=0.0037 Score=36.94 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHHHH----HHHHHC
Q ss_conf 899998776508985762532035665206885243079999999987399717850---4786688999----999976
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE---VGCGLSSMDI----ELGLKS 206 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~---v~~~~~~~~~----~~a~~a 206 (337)
+.+.+.+.+ .|++-+.+-+|...- .. .+.....+.++.+++....++++|- .+.-.+.+.+ +.++++
T Consensus 87 ~~E~~~Ai~-~GAdEIDmVin~~~~---~~--g~~~~v~~~i~~v~~a~~~~~~LKVIlET~~L~~~e~I~~As~~a~~a 160 (258)
T PRK05283 87 LAETRAAIA-YGADEVDVVFPYRAL---MA--GNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKA 160 (258)
T ss_pred HHHHHHHHH-CCCCEEEEEEEHHHH---HC--CCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999999998-799566544508988---57--887999999999999808984389997403478589999999999996
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH-----CC
Q ss_conf 9979994588886510012310234432324431063468899999852289879972988888999999983-----88
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIIL-----GA 281 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlal-----GA 281 (337)
|||+|.=|..-+...++++..+ -+..++.+ ..++.++-|=++||||+..|+++.|.| |.
T Consensus 161 GADFVKTSTGk~~~gAT~e~v~---------------~M~~aI~~-~~~G~~vGvKasGGIrt~~dA~~yl~L~~~~lG~ 224 (258)
T PRK05283 161 GADFIKTSTGKVPVNATLEAAR---------------IMLEVIRD-MGVGKTVGFKPAGGVRTAEDAAQYLALADEILGA 224 (258)
T ss_pred CCCEEECCCCCCCCCCCHHHHH---------------HHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCH
T ss_conf 9798888999899997999999---------------99999998-6458865676258868999999999999997272
Q ss_pred CEE
Q ss_conf 852
Q gi|254781020|r 282 SLG 284 (337)
Q Consensus 282 daV 284 (337)
+++
T Consensus 225 ~w~ 227 (258)
T PRK05283 225 DWA 227 (258)
T ss_pred HHC
T ss_conf 104
No 136
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.59 E-value=0.0007 Score=41.22 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 85228987997298888899999998388852334799998
Q gi|254781020|r 253 RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 253 ~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.....++|||+.||+++-.|+.+.-.+|++.|-+|+++...
T Consensus 177 ~~~~~~~~iiasGGv~s~~Dl~~l~~~g~~gvivG~Al~~g 217 (228)
T PRK04128 177 ERFWGDEEFIYAGGVSSIEDVKKLAEIGFSGAIIGKALYEG 217 (228)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 98616896898789899999999996799899998538569
No 137
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.57 E-value=0.00074 Score=41.09 Aligned_cols=73 Identities=14% Similarity=0.011 Sum_probs=49.5
Q ss_pred HHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 8999999976997999458--88865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~ 274 (337)
.+.++.+.+.|+..|++.. .-|+ ..++ -++.+..+.+ ..++|||++|||.+-.|+.
T Consensus 151 ~d~~~~~~~~g~~~il~TdI~rDGt------------------l~G~---n~el~~~i~~-~~~~pvIaSGGv~sl~Di~ 208 (234)
T PRK13587 151 FSFVRQLSDIPLGGIIYTDIAKDGK------------------MSGP---NFELTGQLVK-ATTIPVIASGGIRHQQDIQ 208 (234)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC------------------CCCC---CHHHHHHHHH-HCCCCEEEECCCCCHHHHH
T ss_conf 9999999743987899840266574------------------5579---9999999997-6799999989989999999
Q ss_pred HHHHHCCCEEHHHHHHH
Q ss_conf 99983888523347999
Q gi|254781020|r 275 KSIILGASLGGLASPFL 291 (337)
Q Consensus 275 kAlalGAdaV~iGr~~l 291 (337)
+.-.+|.+.|-+|+++.
T Consensus 209 ~L~~~gv~GvIvGkAlY 225 (234)
T PRK13587 209 RLASLNVHAAIIGKAAH 225 (234)
T ss_pred HHHHCCCCEEEEEEECC
T ss_conf 99988998999997501
No 138
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.53 E-value=0.00082 Score=40.82 Aligned_cols=115 Identities=14% Similarity=0.189 Sum_probs=80.6
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH------HHHCCCCEEEE-CCCCCCH
Q ss_conf 9999999769979994588886510012310234432324431063468899999------85228987997-2988888
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA------RPYCNEAQFIA-SGGLRNG 270 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~------~~~~~~v~Iia-dGGIr~g 270 (337)
+.+..|++.|+..+++|-.+- .. .-..||.+.|+-.+ ...+.++.||. +|-+|.-
T Consensus 600 ~eA~~AV~~G~~ilILSDr~~------------~~------~~~~IP~LLAv~AVHh~Lir~glR~~~slVveSGe~rev 661 (1483)
T PRK11750 600 DEAEQAVRDGTVLLVLSDRNI------------AK------GRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDP 661 (1483)
T ss_pred HHHHHHHHCCCEEEEEECCCC------------CC------CCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHH
T ss_conf 999999986984999717889------------98------754510999999999999974987611279851325456
Q ss_pred HHHHHHHHHCCCEEHHHHHHHH-H-----H------CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCC
Q ss_conf 9999999838885233479999-8-----4------146689999999999999999998089857896149600
Q gi|254781020|r 271 VDILKSIILGASLGGLASPFLK-P-----A------MDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTAL 333 (337)
Q Consensus 271 ~Dv~kAlalGAdaV~iGr~~l~-~-----~------~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~~~ 333 (337)
-|++-.|..||++|. |+|- . . ..-.+.+.+|...+...|--.|+.+|..+|+..++...|
T Consensus 662 HhfA~LiGyGA~AVn---PYLa~eti~~l~~~g~~~~~~~ea~~nY~kAl~kGLLKIMSKMGIStl~SY~GAqiF 733 (1483)
T PRK11750 662 HHFAVLLGFGATAVY---PYLAYETLGDLVDTGELLGDYRQVMLNYRKGINKGLYKIMSKMGISTIASYRGSQLF 733 (1483)
T ss_pred HHHHHHHHCCHHHCC---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEEE
T ss_conf 685887526674507---688999999999758889999999999999999879999876271120235762320
No 139
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.52 E-value=0.0018 Score=38.80 Aligned_cols=116 Identities=16% Similarity=0.048 Sum_probs=72.3
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
++..|...+...++ ++++..+.+.+..+.++|||.|-.+-... + ..++ . ....+..+....+
T Consensus 100 ~~~aR~~lg~~~II-G~~~~~s~~~A~~A~e~GADYv~fG~~~~-~-~k~~------a---------~~~~l~~l~~~~~ 161 (221)
T PRK06512 100 LAEAIEKHAPKMIV-GFGNLRDRHGAMEVGELQPDYLFFGKLGA-D-NKPE------A---------HPRNLSLAEWWAE 161 (221)
T ss_pred HHHHHHHHCCCCEE-EEECCCCHHHHHHHHHCCCCEEEECCCCC-C-CCCC------C---------CCCCHHHHHHHHH
T ss_conf 99999984788678-64057889999999973998576578788-8-8998------8---------7542589999997
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 228987997298888899999998388852334799998414668999999999999
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKE 311 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~e 311 (337)
.-++|+++-|||. -..+...+..|||+|.+.+.+|. +...++.+.++-..|.+.
T Consensus 162 -~~~iP~VAIGGIt-~~n~~~v~~aGad~vAVisaI~~-a~Dp~~A~~~l~~llde~ 215 (221)
T PRK06512 162 -MIEIPCIVQAGSD-LASIVEVAETGAEFVALGRAVFD-AHDPPLAVAEANALLDEK 215 (221)
T ss_pred -CCCCCEEEECCCC-HHHHHHHHHHCCCEEEEHHHHHC-CCCHHHHHHHHHHHHHCC
T ss_conf -4799989982789-99999999819989988599608-999999999999987332
No 140
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.51 E-value=0.00051 Score=42.05 Aligned_cols=36 Identities=31% Similarity=0.195 Sum_probs=31.8
Q ss_pred CCCEEEECCCCCCHHHHHHHH-HHCCCEEHHHHHHHH
Q ss_conf 898799729888889999999-838885233479999
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSI-ILGASLGGLASPFLK 292 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAl-alGAdaV~iGr~~l~ 292 (337)
.++|||+.||+++-.|+.+++ ..|.++|.+|+.|.|
T Consensus 196 ~~~piiasGGi~~~~di~~l~~~~~~~gv~~gs~f~~ 232 (232)
T TIGR03572 196 VSIPVIALGGAGSLDDLVEVALEAGASAVAAASLFHF 232 (232)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 8999999889899999999998589819997211449
No 141
>PRK13139 consensus
Probab=97.48 E-value=0.0065 Score=35.52 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=90.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-...+.+...+.....+.+++.+ .+.|.+. .+.+.......+..++.- +.-.++.+..+..
T Consensus 99 ~Y~N~i~~~G~e~F~~~~~~~Gv~GvIi-pDLP~eE------------~~~~~~~~~~~gl~~I~l-vaPtt~~~Ri~~i 164 (254)
T PRK13139 99 TYYNILFKYGVERFIDEVADIGVKGLIV-PDLPPEQ------------AQDYIAQCRAKGMAPIGI-YAPTSTDERMGKI 164 (254)
T ss_pred EEHHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHH
T ss_conf 5259998709999999999759985864-7999788------------999999998469757999-4589998999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.+..-.+|..-..-|.|+..... .-....-+..++. ..++||..-=||++..|+ +.+.-+||.
T Consensus 165 ~~~a~gFiY~vs~~GvTG~~~~~---------------~~~~~~~i~~ik~-~t~~Pv~vGFGI~~~e~v-~~~~~~aDG 227 (254)
T PRK13139 165 AAAADGFIYCVARRGVTGSKTSF---------------DEHVGAFLHRCRA-ATPLPLAVGFGVKSAADV-DYLKGKADI 227 (254)
T ss_pred HHCCCCEEEEEECCCCCCCCCCC---------------HHHHHHHHHHHHH-CCCCCEEEECCCCCHHHH-HHHHCCCCE
T ss_conf 85169869999666667988664---------------5889999999985-589987997377999999-999716999
Q ss_pred EHHHHHHHHHHC-CCHHHHHHHHHHH
Q ss_conf 233479999841-4668999999999
Q gi|254781020|r 284 GGLASPFLKPAM-DSSDAVVAAIESL 308 (337)
Q Consensus 284 V~iGr~~l~~~~-~G~~gv~~~l~~l 308 (337)
|-+|++++.... .|.+.+.+++..|
T Consensus 228 vIVGSaiVk~ie~~g~~~v~~f~~~l 253 (254)
T PRK13139 228 AVVGSQAIRLFDEAGAAAVEPFFRSL 253 (254)
T ss_pred EEECHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99888999999975999999999970
No 142
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=97.46 E-value=0.007 Score=35.34 Aligned_cols=143 Identities=16% Similarity=0.053 Sum_probs=86.0
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCCEEEEECCCCCCH----HHHHHHHHCCCC
Q ss_conf 99998776508985762532035665206885-2430799999999873997178504786688----999999976997
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNT-NFADLSSKIALLSSAMDVPLLLKEVGCGLSS----MDIELGLKSGIR 209 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~----~~~~~a~~aGad 209 (337)
+....++ +.|++.+++.- .+.....|.. .++......++.|+..+..++-.-++..... +-+..+.++|+|
T Consensus 72 ~~f~~aV-~AGA~lvEIGN---fDsFY~qGr~f~a~eVL~Lt~~Tr~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaD 147 (243)
T pfam04481 72 ELLYEAV-LAGADLVEIGN---FDSFYKQGRVLSVCEIIALVKETRKLLPHTPLCVTIPHILKLKEQINLAKQLESLGID 147 (243)
T ss_pred HHHHHHH-HHCCCEEEECC---HHHHHHCCCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 8889999-82787898645---3647654766449999999999997689984477457635678999999999981887
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 99945888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 210 YFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 210 ~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
.|-- -||++-.+. ... .-...+...|++.+...+.. ..++||+..+|+.. --+=-|+++||..|++|++
T Consensus 148 iIQT--EGgtss~p~------~~g-~~glIekaapTLAaay~IS~-~v~vPVlcASGlS~-vT~PmAiaaGAsGVGVGSa 216 (243)
T pfam04481 148 LIQT--EGKITSISK------NHC-VNDLIEKSASTLASTYEISK-HVQLPVICASGLSD-VTVPLAFSYGASGIGIGSA 216 (243)
T ss_pred EEEC--CCCCCCCCC------CCC-HHHHHHHHHHHHHHHHHHHH-CCCCCEEECCCCCH-HHHHHHHHCCCCCCCHHHH
T ss_conf 7872--898777888------842-57779887588999999986-17876675467642-1478899748771006577
Q ss_pred HHH
Q ss_conf 999
Q gi|254781020|r 290 FLK 292 (337)
Q Consensus 290 ~l~ 292 (337)
.=+
T Consensus 217 vn~ 219 (243)
T pfam04481 217 VSK 219 (243)
T ss_pred HHH
T ss_conf 650
No 143
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.45 E-value=0.0071 Score=35.29 Aligned_cols=90 Identities=19% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHHHHHHHCCCCEEEECCC--CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 9999999769979994588--88651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGR--GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~--gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
+-++.+.+.||--|.+-.. -|+ ..+.-+++.. .++ -..++|||++||.-+..|.+.
T Consensus 159 eWa~~~e~~GAGEIlLtsmD~DGt------------------k~GyDl~l~~---~v~-~~v~iPvIASGGaG~~ehf~e 216 (256)
T COG0107 159 EWAKEVEELGAGEILLTSMDRDGT------------------KAGYDLELTR---AVR-EAVNIPVIASGGAGKPEHFVE 216 (256)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCC------------------CCCCCHHHHH---HHH-HHCCCCEEECCCCCCHHHHHH
T ss_conf 999999973885487863556565------------------3675799999---999-648878891189896889999
Q ss_pred HHHHC-CCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99838-88523347999984146689999999999999999998089
Q gi|254781020|r 276 SIILG-ASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 276 AlalG-AdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 321 (337)
++-.| ||++.-++-|.+. +.-..|+|..|..-|.
T Consensus 217 af~~~~adAaLAAsiFH~~------------~~~i~evK~yl~~~gi 251 (256)
T COG0107 217 AFTEGKADAALAASIFHFG------------EITIGEVKEYLAEQGI 251 (256)
T ss_pred HHHHCCCHHHHHHHHHHCC------------CCCHHHHHHHHHHCCC
T ss_conf 9981570088764433147------------4549999999998598
No 144
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.43 E-value=0.0055 Score=35.97 Aligned_cols=39 Identities=13% Similarity=-0.009 Sum_probs=24.9
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 9852289879972988888999999983888523347999
Q gi|254781020|r 252 ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 252 ~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
.+....+++++..|||.- ..+-+.|.+++-.+.-|+.+.
T Consensus 149 l~~p~p~~~~~ptGGV~~-~N~~~yl~~~~v~~vgGs~l~ 187 (212)
T PRK06015 149 LSSPLAGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVA 187 (212)
T ss_pred HHCCCCCCCEEECCCCCH-HHHHHHHCCCCEEEEECHHHC
T ss_conf 857799998886289898-889999808981999883538
No 145
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.43 E-value=0.0039 Score=36.85 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=23.1
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHCC-CEEHHHHHHH
Q ss_conf 985228987997298888899999998388-8523347999
Q gi|254781020|r 252 ARPYCNEAQFIASGGLRNGVDILKSIILGA-SLGGLASPFL 291 (337)
Q Consensus 252 ~~~~~~~v~IiadGGIr~g~Dv~kAlalGA-daV~iGr~~l 291 (337)
.+....+++++..|||. -..+-..|+++. -+|+ |+.+.
T Consensus 149 l~~p~p~i~~~ptGGV~-~~N~~~yl~~~~v~avg-GS~l~ 187 (212)
T PRK05718 149 LAGPFSDVRFCPTGGIS-PANYRDYLALPNVLCIG-GSWMV 187 (212)
T ss_pred HHCCCCCCEEEECCCCC-HHHHHHHHCCCCEEEEE-CHHHC
T ss_conf 85658998288659989-87899998178869998-73528
No 146
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.42 E-value=0.0078 Score=35.06 Aligned_cols=140 Identities=20% Similarity=0.273 Sum_probs=85.5
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHH---HHHHHHHCCCCEEEEE------CCCCCCHHH----HHHHHHCCCC
Q ss_conf 50898576253203566520688524307999---9999987399717850------478668899----9999976997
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSK---IALLSSAMDVPLLLKE------VGCGLSSMD----IELGLKSGIR 209 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~~~~~~pii~k~------v~~~~~~~~----~~~a~~aGad 209 (337)
..+++++.++++..- ..-....+. +..-...|+.|+++-. +.+-.+++. ++.+.|.|||
T Consensus 104 rlGAdaV~~~v~~Gs--------~~E~~~l~~l~~l~~ea~~~GlPll~~~yprG~~~~~~~d~~~ia~aaRia~ELGAD 175 (266)
T PRK07226 104 KLGADAVSVHVNVGS--------ETEAEMLEDLGRIARECEEWGMPLLAMMYPRGPKIKNEYDPEVVAHAARVGAELGAD 175 (266)
T ss_pred HCCCCEEEEEEECCC--------CCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 558778999854799--------837999999999999999859956999734688777787599999999999996799
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH--H----HHHHHHHCCCE
Q ss_conf 99945888865100123102344323244310634688999998522898799729888889--9----99999838885
Q gi|254781020|r 210 YFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV--D----ILKSIILGASL 283 (337)
Q Consensus 210 ~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~--D----v~kAlalGAda 283 (337)
.|.+.-.|- .+...++.+.+ .+||+..||=+.+. | +-.+|-.||..
T Consensus 176 iVKv~y~gd---------------------------~e~f~~vv~~~-~vPVliaGG~k~~~~~~~L~~v~~ai~aGa~G 227 (266)
T PRK07226 176 IIKTNYTGD---------------------------PESFREVVEGC-PVPVVIAGGPKTGSDLEFLQMVEDAMEAGAAG 227 (266)
T ss_pred EEEECCCCC---------------------------HHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCE
T ss_conf 898359999---------------------------89999999847-98789957888898899999999999759946
Q ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHHHH---HHHHHHHCC
Q ss_conf 2334799998414668999999999999---999999808
Q gi|254781020|r 284 GGLASPFLKPAMDSSDAVVAAIESLRKE---FIVSMFLLG 320 (337)
Q Consensus 284 V~iGr~~l~~~~~G~~gv~~~l~~l~~e---l~~~m~~~G 320 (337)
|-+||-.|+. .-+..+.+.+..+..| .+..|..+|
T Consensus 228 v~~GRNvfQ~--~~p~~~~~al~~iVH~~~s~~eAl~~lg 265 (266)
T PRK07226 228 VAIGRNIFQH--EDPAKITRAISAVVHEGADPEEALKALG 265 (266)
T ss_pred EEECCHHHCC--CCHHHHHHHHHHHHCCCCCHHHHHHHCC
T ss_conf 6526102357--9899999999998509999999998727
No 147
>PRK00830 consensus
Probab=97.42 E-value=0.0012 Score=39.95 Aligned_cols=76 Identities=21% Similarity=0.094 Sum_probs=50.0
Q ss_pred CHHHHHHHHHCCCCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Q ss_conf 88999999976997999458--8886510012310234432324431063468899999852289879972988888999
Q gi|254781020|r 196 SSMDIELGLKSGIRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI 273 (337)
Q Consensus 196 ~~~~~~~a~~aGad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv 273 (337)
..+.++.+.+.|+--|.+.. .-|+ ..++ -++.+..+.+ ..++|||++||+.+-.|+
T Consensus 175 ~~~~~~~~~~~G~geil~tdI~rDGt------------------~~G~---d~~l~~~i~~-~~~iPvIasGGv~~~~di 232 (273)
T PRK00830 175 AVQWAKKVEELGAGEILLTSMDRDGT------------------KDGY---DIPITKKISE-EVDIPVIASGGVGNPEHI 232 (273)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCC------------------CCCC---CHHHHHHHHH-CCCCCEEEECCCCCHHHH
T ss_conf 99999999864988688878757796------------------5688---9699999986-379988998899999999
Q ss_pred HHHHHHC-CCEEHHHHHHHHH
Q ss_conf 9999838-8852334799998
Q gi|254781020|r 274 LKSIILG-ASLGGLASPFLKP 293 (337)
Q Consensus 274 ~kAlalG-AdaV~iGr~~l~~ 293 (337)
.+++-.+ +++|..|+.|.+.
T Consensus 233 ~~~~~~~~~~~v~~gs~f~~~ 253 (273)
T PRK00830 233 YEGFSDGKADAALAASIFHFN 253 (273)
T ss_pred HHHHHHCCCCEEEEEHHHHCC
T ss_conf 999983898688770056669
No 148
>PRK02747 consensus
Probab=97.40 E-value=0.0019 Score=38.70 Aligned_cols=37 Identities=24% Similarity=0.109 Sum_probs=32.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH-CCCEEHHHHHHHHH
Q ss_conf 89879972988888999999983-88852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIIL-GASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlal-GAdaV~iGr~~l~~ 293 (337)
.++|||+.||+.+..|+.+++-- ++++|..|+.|.+.
T Consensus 199 ~~~pvIasGGv~~~~di~~~~~~~~~~av~~g~~~~~~ 236 (257)
T PRK02747 199 VRVPVIASGGVGTLDHLVEGVRDGHATAVLAASIFHFG 236 (257)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf 79989997799999999999983898499883267769
No 149
>PRK13115 consensus
Probab=97.40 E-value=0.0084 Score=34.87 Aligned_cols=161 Identities=13% Similarity=0.093 Sum_probs=98.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+ .+.|.+. ...+.......+...+. ++.-.++.+.++...
T Consensus 107 Y~N~i~~yG~e~F~~~~~~~GvdGvIi-pDLP~eE------------~~~~~~~~~~~gi~~I~-LvaPtt~~eRi~~i~ 172 (269)
T PRK13115 107 YWNPVLRYGVDRFARDLAAAGGAGLIT-PDLIPDE------------AGEWLAASERHGLDRIF-LVAPSSTPERLAETV 172 (269)
T ss_pred HHHHHHHHCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCEEEEE-EECCCCCHHHHHHHH
T ss_conf 548998736999999999739980764-7899789------------99999999865812899-858999889999998
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
+..-.+|..-..-|.|+..... .-....-+..+++. .++||..-=||++..|+-+ +.-.||.|
T Consensus 173 ~~a~GFIY~Vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~-~~~~aDGv 235 (269)
T PRK13115 173 EASRGFVYAASTMGVTGARDAV---------------SSAAPELVARVRAA-SDIPVCVGLGVSSAAQAAE-IAGYADGV 235 (269)
T ss_pred HCCCCCEEEEECCCCCCCCCCC---------------CHHHHHHHHHHHHH-CCCCCEEECCCCCHHHHHH-HHHHCCEE
T ss_conf 4488808997545456776444---------------17799999999971-7998179727899999999-98029999
Q ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH
Q ss_conf 33479999841-466899999999999999999
Q gi|254781020|r 285 GLASPFLKPAM-DSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 285 ~iGr~~l~~~~-~G~~gv~~~l~~l~~el~~~m 316 (337)
-+|++++..+. .|.+.+..+++.|.+.+|..+
T Consensus 236 IVGSa~V~~i~~~g~~~v~~~~~el~~~~k~a~ 268 (269)
T PRK13115 236 IVGSALVSALLDGGLPAVRALTEELAAGVRRAV 268 (269)
T ss_pred EECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 986899999997597999999999999999853
No 150
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.39 E-value=0.0027 Score=37.75 Aligned_cols=37 Identities=32% Similarity=0.302 Sum_probs=33.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8987997298888899999998388852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.++|+|+.||+++-.|+-+.-.+|+++|-+|+++...
T Consensus 188 ~~~pvi~sGGv~s~~di~~l~~~g~~gvivg~alh~g 224 (233)
T cd04723 188 ADIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred CCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 8998999889999999999997899899986397789
No 151
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.37 E-value=0.0058 Score=35.82 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHH-CCCCEEEEC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH----HHCCCCEEEECCCC
Q ss_conf 668899999997-699799945-888865100123102344323244310634688999998----52289879972988
Q gi|254781020|r 194 GLSSMDIELGLK-SGIRYFDIA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR----PYCNEAQFIASGGL 267 (337)
Q Consensus 194 ~~~~~~~~~a~~-aGad~i~v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~----~~~~~v~IiadGGI 267 (337)
..+.+.+..+.+ -=+|-|+|- -.|| +++..+... =+|.+.+|.+-. .....+.|-+.|||
T Consensus 163 ~iT~eqA~lA~~vPmAdDItvEaDSGG----------HTD~~~l~~----LlP~i~~LRd~~~~~~~y~~~iRvGaAGGI 228 (418)
T cd04742 163 KITEEQAELARRVPVADDITVEADSGG----------HTDNRPLSV----LLPTIIRLRDELAARYGYRRPIRVGAAGGI 228 (418)
T ss_pred CCCHHHHHHHHCCCCCCCEEEECCCCC----------CCCCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEECCCCCC
T ss_conf 988999998827985323677315787----------777864788----989999999999986188888411035887
Q ss_pred CCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 8889999999838885233479
Q gi|254781020|r 268 RNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 268 r~g~Dv~kAlalGAdaV~iGr~ 289 (337)
-|+.-++.|++|||++|.-|+-
T Consensus 229 GTP~aaaAAF~mGA~yVvTGSI 250 (418)
T cd04742 229 GTPEAAAAAFALGADFIVTGSI 250 (418)
T ss_pred CCHHHHHHHHHCCCCEEEECCH
T ss_conf 9879999999717744895553
No 152
>PRK13116 consensus
Probab=97.33 E-value=0.0099 Score=34.44 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=83.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.....+.+...+.....+.+++.+ ++.|.+. .+.+.......+...+ ..++..++.+..+...
T Consensus 102 Y~N~i~~~G~e~F~~~~~~aGvdGlIi-pDLP~eE------------~~~~~~~~~~~~i~~I-~l~~ptt~~~ri~~I~ 167 (278)
T PRK13116 102 YGNVPFTRGLDRFYQEFAEAGADSILL-PDVPVRE------------GAPFSAAAAAAGIDPI-YIAPANASEKTLEGVS 167 (278)
T ss_pred CCCHHHHCCHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEE-EEECCCCCHHHHHHHH
T ss_conf 572887727999999997769758994-6999788------------8999999986576669-9937999599999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH-HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 7699799945888865100123102344323244310634688-999998522898799729888889999999838885
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL-SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~-al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
+..-.+|..-..-|.|+.... .. ...+. .+..++.. .++||..-=||++..|+.+++..+||.
T Consensus 168 ~~s~GFiY~VS~~GvTG~~~~----~~-----------~~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~~aDG 231 (278)
T PRK13116 168 AASKGYIYAISRDGVTGTERE----SS-----------TDGLSAVVDNIKKF-DGAPILLGFGISSPQHVADAIAAGASG 231 (278)
T ss_pred HHCCCEEEEEECCCCCCCCCC----CC-----------HHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 718973999863522268866----66-----------78999999999845-799879981679899999998668999
Q ss_pred EHHHHHHHHHHCCC
Q ss_conf 23347999984146
Q gi|254781020|r 284 GGLASPFLKPAMDS 297 (337)
Q Consensus 284 V~iGr~~l~~~~~G 297 (337)
|-||+++...+...
T Consensus 232 VIVGSAiVk~Ie~~ 245 (278)
T PRK13116 232 AITGSAITKIIASH 245 (278)
T ss_pred EEECHHHHHHHHHC
T ss_conf 99877999999852
No 153
>PRK13140 consensus
Probab=97.32 E-value=0.01 Score=34.34 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=92.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-..++.+...+.....+.+++.+ ++.|.+. ..+....+....+..++.- +...++.+.++..
T Consensus 97 ~Y~N~i~~~G~e~F~~~~~~~GvdGlIi-pDLP~ee-----------~~~~~~~~~~~~~i~~I~l-vaPtt~~~Ri~~i 163 (257)
T PRK13140 97 GYLNPIMQYGFEKFCKKCAETGIDGVII-PDLPFDD-----------YQEHYKEIFEKYGLKNIML-ITPQTSEERIREI 163 (257)
T ss_pred ECHHHHHHHCHHHHHHHHHHCCCCEEEE-CCCCHHH-----------HHHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHH
T ss_conf 0559998517999999999849986983-5998567-----------5899999999869977998-6899989999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.+..-.+|..-..-|.|+.+... .-.....+..+++...++||..-=||++..|+ +.+.-+||.
T Consensus 164 ~~~a~gFiY~vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~~~~~Pv~vGFGIs~~e~v-~~~~~~aDG 227 (257)
T PRK13140 164 DSHTDGFIYMVSSASTTGAQQDF---------------NNQKRAYFKRIKDMNLKNPRMVGFGISNKATF-NAACEYASG 227 (257)
T ss_pred HHHCCCCEEECCCCCCCCCCCCC---------------CHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH-HHHHHCCCE
T ss_conf 97399966870365666887665---------------15689999999982789986998057989999-999831999
Q ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 233479999841466899999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDSSDAVVAAIESLRKEFI 313 (337)
Q Consensus 284 V~iGr~~l~~~~~G~~gv~~~l~~l~~el~ 313 (337)
|-+|++++..+.++....+ .+..+..|||
T Consensus 228 vIVGSaivk~i~e~~~~~~-~v~~fv~~lk 256 (257)
T PRK13140 228 AIIGSAFVKLLKEEKNPEK-AILKFVKEIK 256 (257)
T ss_pred EEECHHHHHHHHHCCCHHH-HHHHHHHHHC
T ss_conf 9987999999987798789-9999999962
No 154
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.31 E-value=0.011 Score=34.28 Aligned_cols=152 Identities=11% Similarity=0.117 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+.+.........+.+++.+ ++.|.+. ..-.+.............+. .+...+..+.++...+..-.++.
T Consensus 92 g~e~F~~~~~~~GvdGvIi-pDLP~e~---------~ee~~~~~~~~~~~gl~~I~-lvsPtt~~~ri~~i~~~s~gFvY 160 (247)
T PRK13125 92 SLDDLLNTAKEVGARGVLF-PDLLIDF---------PDELEKYVELIRRYGLAPVF-FTSPKFPDRLIRRLSKLSPLFIY 160 (247)
T ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCCC---------HHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHCCCEEE
T ss_conf 6999999999859975883-3888754---------67899999999976984699-95799819999999986897799
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 45888865100123102344323244310634688999998522898799729888889999999838885233479999
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
++-.|. |+.... ...-..+..+++...++||..-=||++..|+.+++..|||.|-+|++++.
T Consensus 161 ~~~~gv-TG~~~~-----------------~~~~~~i~~ik~~~~~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSaiVk 222 (247)
T PRK13125 161 LGLYPA-TGVELP-----------------VYVERNIKRVRELVGDVYLVAGFAIDSPEDAAKALSAGADGVVVGTAFIR 222 (247)
T ss_pred EEEECC-CCCCCC-----------------CCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH
T ss_conf 994436-788773-----------------25999999999856999858832879999999998558999998789999
Q ss_pred HHCCC-HHHHHHHHHHHHHHHH
Q ss_conf 84146-6899999999999999
Q gi|254781020|r 293 PAMDS-SDAVVAAIESLRKEFI 313 (337)
Q Consensus 293 ~~~~G-~~gv~~~l~~l~~el~ 313 (337)
....+ .+.+.+++..|+..|.
T Consensus 223 ~i~~~~~~~~~~~v~~l~~al~ 244 (247)
T PRK13125 223 RLERNGVEEALSLLKEIRGALD 244 (247)
T ss_pred HHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9997698999999999999985
No 155
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.30 E-value=0.011 Score=34.19 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=75.9
Q ss_pred HHHHHHCCCEEEECCCCHHH---HHHH----CCCCC-------HHHHHHHHHHHHHHCCC--CEEEEECC---C------
Q ss_conf 87765089857625320356---6520----68852-------43079999999987399--71785047---8------
Q gi|254781020|r 139 QAVHVLGADGLFLHLNPLQE---IIQP----NGNTN-------FADLSSKIALLSSAMDV--PLLLKEVG---C------ 193 (337)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~-------~~~~~~~i~~l~~~~~~--pii~k~v~---~------ 193 (337)
+.....|.|++++|..+..- -.++ ..|.. .+-..+.++.+|+.++. |+.++... .
T Consensus 151 ~rA~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGSlENR~Rf~~Eii~aVr~~vg~df~vg~Ris~~~~~~~~~~~ 230 (361)
T cd04747 151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL 230 (361)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 99998399989951044658998358743889887899879847369999999999729987599996776576766556
Q ss_pred CCCHHH----HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCC--
Q ss_conf 668899----99999769979994588886510012310234432324431063468899999852289879972988--
Q gi|254781020|r 194 GLSSMD----IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGL-- 267 (337)
Q Consensus 194 ~~~~~~----~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGI-- 267 (337)
..+++. ++.+.++|+|.+-+|.... + ... ..+..+..... .+. ...+|++..|++
T Consensus 231 ~~~~ee~~~~~~~l~~~GvD~i~~s~~~~--~---------~p~----~~~~~~~~~~~---~k~-~~~~p~~~~g~~~~ 291 (361)
T cd04747 231 ADTPDELEALLAPLVDAGVDIFHCSTRRF--W---------EPE----FEGSELNLAGW---TKK-LTGLPTITVGSVGL 291 (361)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCC--C---------CCC----CCCCCCCHHHH---HHH-HCCCCEEEECCCHH
T ss_conf 79999999999999977999898413445--6---------765----67774448899---888-62897586444103
Q ss_pred ----------------CCHHHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf ----------------8889999999838-885233479999
Q gi|254781020|r 268 ----------------RNGVDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 268 ----------------r~g~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
.+-.++.++|+-| ||+|++||+++-
T Consensus 292 ~~~~~~~~~~~~~~~~~~~e~ae~~l~~G~~D~V~~gR~lla 333 (361)
T cd04747 292 DGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 567777751245447779999999998699413897599997
No 156
>PRK04281 consensus
Probab=97.28 E-value=0.0025 Score=37.97 Aligned_cols=36 Identities=31% Similarity=0.282 Sum_probs=32.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 898799729888889999999838-885233479999
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
.++|||+.||+.+..|+.+++-.| +++|-.|+.|.+
T Consensus 197 ~~iPvIasGGv~~~~di~~~~~~~~~~~v~~g~~~~~ 233 (254)
T PRK04281 197 VDIPVIASGGVGNVRHLIEGITEGKADAVLAAGIFHF 233 (254)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEHHHHHC
T ss_conf 6998999789899999999998089888976437777
No 157
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.25 E-value=0.012 Score=33.88 Aligned_cols=146 Identities=9% Similarity=0.050 Sum_probs=86.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHCCCCEEEECCCCCCCCCC----------------------HHH-H
Q ss_conf 9999999987399717850478668-899999997699799945888865100----------------------123-1
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLS-SMDIELGLKSGIRYFDIAGRGGTSWSR----------------------IES-H 227 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~-~~~~~~a~~aGad~i~v~~~gG~~~~~----------------------~~~-~ 227 (337)
.+.++.+|+.++..+++--.-.-.+ ...++.+.++|||.++|.+-....... +.. .
T Consensus 214 ~~aV~~iRe~fPd~~IvADlKTmDaG~lEa~mAa~AGADivtVlG~A~~sTI~~aikeA~k~G~~v~vDlInV~dpv~ra 293 (392)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSILDMLNVEDPVKLL 293 (392)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH
T ss_conf 89999999878998899854203542688888887599889995679878999999999970979999834788889999
Q ss_pred CCCCCCC------CHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHH
Q ss_conf 0234432------3244310634688999998522898799729888889999999838885233479999841466899
Q gi|254781020|r 228 RDLESDI------GIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAV 301 (337)
Q Consensus 228 r~~~~~~------~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv 301 (337)
+.+.-.+ ...+....-.....+...+....+++|-..|||.. .-+-+++.+|||-|-+||+...+.
T Consensus 294 ~eLklg~DiI~lH~giD~Q~~~~~~~~l~~i~~~~~~~~VAVAGGI~~-et~~~~~~~gadIvIVG~aIT~S~------- 365 (392)
T PRK13307 294 ESLKVKPDVVELHRGIDEEGTEHAWGNIPEIKKAAGKILVAVAGGVRV-EKVEEALKAGADILVVGRAITKSK------- 365 (392)
T ss_pred HHHCCCCCEEEEEECCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHCCCCEEEECCHHCCCC-------
T ss_conf 984446988999854126403687456999997426805999778888-889999846998999891213789-------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 99999999999999998089857896149
Q gi|254781020|r 302 VAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 302 ~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
.-.+..|..+..++...|+++|--
T Consensus 366 -----Dp~~AAreil~~~~~~e~d~~r~~ 389 (392)
T PRK13307 366 -----DVRRAAEQFLNKLNKPEIDQFRIM 389 (392)
T ss_pred -----CHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf -----989999999987377774113641
No 158
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.013 Score=33.74 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=56.5
Q ss_pred CCCCCCHHHHHHHHHCCCCEEE--ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 4786688999999976997999--45888865100123102344323244310634688999998522898799729888
Q gi|254781020|r 191 VGCGLSSMDIELGLKSGIRYFD--IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR 268 (337)
Q Consensus 191 v~~~~~~~~~~~a~~aGad~i~--v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr 268 (337)
.....+.++...|.++|+|.|- ++|.-+ -.. ...-|-...+..+.+ .+++||+-|.+-
T Consensus 131 MAD~St~ee~l~a~~~G~D~IGTTLsGYT~--~~~----------------~~~~pDf~lvk~l~~--~~~~vIAEGr~~ 190 (229)
T COG3010 131 MADCSTFEEGLNAHKLGFDIIGTTLSGYTG--YTE----------------KPTEPDFQLVKQLSD--AGCRVIAEGRYN 190 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCCCC--CCC----------------CCCCCCHHHHHHHHH--CCCEEEEECCCC
T ss_conf 732598888888997399678224201468--998----------------778972899999986--799399517879
Q ss_pred CHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 88999999983888523347999
Q gi|254781020|r 269 NGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 269 ~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
|+..+.+++-+||++|-||++.-
T Consensus 191 tP~~Ak~a~~~Ga~aVvVGsAIT 213 (229)
T COG3010 191 TPEQAKKAIEIGADAVVVGSAIT 213 (229)
T ss_pred CHHHHHHHHHHCCEEEEECCCCC
T ss_conf 99999999971880899874337
No 159
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=97.20 E-value=0.0043 Score=36.60 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=80.3
Q ss_pred CCCHHHHCCHHHHH-HHHHHHHCCC---HHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCH
Q ss_conf 52022112866888-9999986640---1232202752123679989999877650898576253203566520688524
Q gi|254781020|r 93 GSQRVMFSDHNAIK-SFELRQYAPH---TVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNF 168 (337)
Q Consensus 93 g~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (337)
+.++..+..+...+ .....-.+-. .++-.++..-.-....++.+..+..+..|+.++.+|..+-.- -..+
T Consensus 116 ~aGsaLl~~p~~~~~iv~~vV~AV~~~~iPVTVK~R~GWD~~h~n~~~~a~~a~~~Ga~Av~lHGRTRaQ------~Y~G 189 (336)
T TIGR00737 116 GAGSALLRDPDLIGKIVKAVVDAVDAQDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ------GYEG 189 (336)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEHHHHHHCC------CCCC
T ss_conf 6354323586899999999998751876651665515636244888999999987240002111000001------5788
Q ss_pred HHHHHHHHHHHHHCC----CCEEEEECCCCCCHHHHHHHH-HCCCCEEEEC-CCCCCCCCC
Q ss_conf 307999999998739----971785047866889999999-7699799945-888865100
Q gi|254781020|r 169 ADLSSKIALLSSAMD----VPLLLKEVGCGLSSMDIELGL-KSGIRYFDIA-GRGGTSWSR 223 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~----~pii~k~v~~~~~~~~~~~a~-~aGad~i~v~-~~gG~~~~~ 223 (337)
..-|+.|+.++.... .||+. -|.+.++++++..+ +.|+|||.|+ +.-|..|.-
T Consensus 190 ~A~wd~I~~vKq~v~~~GeiPVig--NGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~ 248 (336)
T TIGR00737 190 EANWDIIARVKQAVRKEGEIPVIG--NGDIFSPEDAKAMLETTGADGVMIGRGALGNPWLF 248 (336)
T ss_pred CCCHHHHHHHHHHHHCCCCCCEEC--CCCCCCHHHHHHHHHHCCCCEEEEECHHCCCCHHH
T ss_conf 760689999999971687533222--77424678999998637886898500222787589
No 160
>PRK13124 consensus
Probab=97.10 E-value=0.018 Score=32.95 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=90.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 23679989999877650898576253203566520688524307999999998739971785047866889999999769
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG 207 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG 207 (337)
.-..++.+...+.....+.+++.+ .+.|.+. ...+.......+..++.-..+ ++.+.++...+..
T Consensus 96 ~i~~~G~e~F~~~~~~~Gv~GvIi-pDLP~eE------------~~~~~~~~~~~gl~~I~lvaP--Ts~~Ri~~i~~~s 160 (257)
T PRK13124 96 PVLQYGLEKFFALARENGIDGLLI-PDLPLEE------------SGELQEICDKYGIYLIPLVAP--TSKERIKKIAEQA 160 (257)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHCC
T ss_conf 898757999999999759984777-8999799------------999999998668735788479--9679999998548
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 97999458888651001231023443232443106346889999985228987997298888899999998388852334
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
-.+|..-..-|.|+.... . .......+..+++. .++||..-=||++..|+ +.+.-+||.|-+|
T Consensus 161 ~gFiY~vs~~GvTG~~~~-----~----------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v-~~~~~~ADGvIVG 223 (257)
T PRK13124 161 EGFVYCVSSLGVTGVREE-----I----------ETDLEEFIRTVKQY-SNVPVAVGFGISTPEQV-QKMKEIADGVVVG 223 (257)
T ss_pred CCCEEEEECCCCCCCCCC-----C----------HHHHHHHHHHHHHC-CCCCEEEEECCCCHHHH-HHHHHHCCEEEEC
T ss_conf 983899624666787655-----6----------08899999999861-79983898446999999-9998019999982
Q ss_pred HHHHHHHCCCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 79999841466--8999999999999999999
Q gi|254781020|r 288 SPFLKPAMDSS--DAVVAAIESLRKEFIVSMF 317 (337)
Q Consensus 288 r~~l~~~~~G~--~gv~~~l~~l~~el~~~m~ 317 (337)
++++..+..+. +-...-+..+..+||..+.
T Consensus 224 Saivk~i~~~~~~~~~~~~v~~fv~~lk~ald 255 (257)
T PRK13124 224 SALVEKIEEPEEREEALAEVEEFASSLRESLD 255 (257)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 89999998568757899999999999999877
No 161
>TIGR00007 TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro: IPR006063 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (5.3.1.16 from EC), also known as Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase or HisA, catalyses the fourth step in histidine biosynthesis. HisA from Lactococcus lactis was found to be inactive . The putative HisA from Thermotoga maritima, is a conspicuous outlier to the set of all other HisA, including experimental HisA from the bacterium E. coli and the Archaeaon Methanococcus voltae. Neighbor joining shows HisA from Thermotoga maritima to be within the HisA family (with HisF as an outgroup) but with a long branch. ; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0000105 histidine biosynthetic process.
Probab=97.08 E-value=0.0044 Score=36.50 Aligned_cols=80 Identities=15% Similarity=-0.053 Sum_probs=54.2
Q ss_pred CCCCCHHHHHHHHHCC-CCEEEECC--CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 7866889999999769-97999458--88865100123102344323244310634688999998522898799729888
Q gi|254781020|r 192 GCGLSSMDIELGLKSG-IRYFDIAG--RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR 268 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aG-ad~i~v~~--~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr 268 (337)
.+....+.++++.+.| +..|+.-. .-|+ ..++ -.+...+....-.+++||++|||+
T Consensus 149 s~~~~~~~~~~~~~~G~~~~ii~TdI~~DGt------------------l~G~---n~~~~~~~~~~~~~~~viaSGGv~ 207 (241)
T TIGR00007 149 SEVSLEELAKRLEELGELEGIIYTDISRDGT------------------LSGP---NFELTKELVKALVNVPVIASGGVS 207 (241)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEEEECCCC------------------EECC---CCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 5627999999985158633689975200672------------------0078---732889999873584189942657
Q ss_pred CHHHHHHHHH--HCCCEEHHHHHHHH
Q ss_conf 8899999998--38885233479999
Q gi|254781020|r 269 NGVDILKSII--LGASLGGLASPFLK 292 (337)
Q Consensus 269 ~g~Dv~kAla--lGAdaV~iGr~~l~ 292 (337)
|-.|+-++=. +|...|=||++++.
T Consensus 208 s~~D~~~L~~~~~G~~GvIvGkALY~ 233 (241)
T TIGR00007 208 SIDDLRALKEIELGVYGVIVGKALYE 233 (241)
T ss_pred CHHHHHHHHHCCCCCCEEEEEEEECC
T ss_conf 88999999971598327998621116
No 162
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.07 E-value=0.011 Score=34.27 Aligned_cols=77 Identities=14% Similarity=-0.033 Sum_probs=50.5
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 88999999976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 196 SSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 196 ~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
..+.+++..+.|+..|+.-.-. .++. ..|+ -...+.+..+. .++|||++|||++=.|+-.
T Consensus 149 ~~~l~~~~~~~g~~~ii~TdI~------------~DGt------l~G~-n~~l~~~l~~~-~~ipviaSGGv~s~~Di~~ 208 (241)
T COG0106 149 LEELAKRLEEVGLAHILYTDIS------------RDGT------LSGP-NVDLVKELAEA-VDIPVIASGGVSSLDDIKA 208 (241)
T ss_pred HHHHHHHHHHCCCCEEEEEECC------------CCCC------CCCC-CHHHHHHHHHH-HCCCEEEECCCCCHHHHHH
T ss_conf 9999999985787769998514------------4664------5777-87999999998-2767898668687999999
Q ss_pred HHHH-CCCEEHHHHHHHH
Q ss_conf 9983-8885233479999
Q gi|254781020|r 276 SIIL-GASLGGLASPFLK 292 (337)
Q Consensus 276 Alal-GAdaV~iGr~~l~ 292 (337)
+-.+ |...|-+||+++-
T Consensus 209 l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 209 LKELSGVEGVIVGRALYE 226 (241)
T ss_pred HHHCCCCCEEEEEHHHHC
T ss_conf 985579728998668964
No 163
>PRK04180 pyridoxine biosynthesis protein; Provisional
Probab=97.07 E-value=0.0083 Score=34.90 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=48.2
Q ss_pred HHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC--CCHHH----HH-----HHHHHHHHHHHHH
Q ss_conf 9999985228-98799729888889999999838885233479999841--46689----99-----9999999999999
Q gi|254781020|r 248 SLEMARPYCN-EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM--DSSDA----VV-----AAIESLRKEFIVS 315 (337)
Q Consensus 248 al~~~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~--~G~~g----v~-----~~l~~l~~el~~~ 315 (337)
.+..+++.+. -|+-.+.|||.|+.|++-.+-||||.|++|+...+..- .-++. +. +.+.....+|-..
T Consensus 194 lv~~v~~~grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~~rA~AIV~A~thy~dp~~laevS~~Lgea 273 (293)
T PRK04180 194 LVKEVARLGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGNPEKRAKAIVEATTHYDDPEVLAEVSKGLGEA 273 (293)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 99999984887625532577578056999987178746754543467998899999999985237899999998612656
Q ss_pred HHHCCCCCH
Q ss_conf 998089857
Q gi|254781020|r 316 MFLLGTKRV 324 (337)
Q Consensus 316 m~~~G~~~i 324 (337)
|.-+...+|
T Consensus 274 M~Gi~i~~l 282 (293)
T PRK04180 274 MVGIDIDEL 282 (293)
T ss_pred CCCCCCCCC
T ss_conf 678860329
No 164
>PRK08227 aldolase; Validated
Probab=96.98 E-value=0.023 Score=32.31 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=75.1
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHH----HHHHHHHCCCCEEEECC
Q ss_conf 508985762532035665206885243079999999987399717850---47866889----99999976997999458
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE---VGCGLSSM----DIELGLKSGIRYFDIAG 215 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~---v~~~~~~~----~~~~a~~aGad~i~v~~ 215 (337)
..+++++.++++..... ....-.-.-.+..-+..|+.|++.-. -....+++ .++.+.|.|||.|.+..
T Consensus 132 rlGAdAVsv~v~iGs~~-----E~~~l~~lg~v~~e~~~~GmPlla~~~~g~~~~~d~~~va~aaRia~ELGADiVKt~y 206 (291)
T PRK08227 132 RLNVCAVAAQVFIGSEY-----ETQSIKNIIQLVDAGLRYGMPTMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYY 206 (291)
T ss_pred HCCCCEEEEEEECCCCH-----HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEECCC
T ss_conf 67997899986359932-----8999999999999999829987998346877777789999999999997899885069
Q ss_pred CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH-----HHHHHHHHCCCEEHHHHHH
Q ss_conf 88865100123102344323244310634688999998522898799729888889-----9999998388852334799
Q gi|254781020|r 216 RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV-----DILKSIILGASLGGLASPF 290 (337)
Q Consensus 216 ~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~-----Dv~kAlalGAdaV~iGr~~ 290 (337)
.+ +....+.+ .-.+||+..||=++.. .+..+|-.||..|-+||-+
T Consensus 207 t~-----------------------------e~f~~Vv~-a~pvPVliaGG~k~~d~e~L~~v~~a~~aGa~Gv~~GRNV 256 (291)
T PRK08227 207 VE-----------------------------KGFERITA-GCPVPIVIAGGKKLPERDALEMCYQAIDQGASGVDMGRNI 256 (291)
T ss_pred CH-----------------------------HHHHHHHH-CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 73-----------------------------45999996-4899789967998986999999999997699368724002
Q ss_pred HHHHCCCHHHHHHHHHHHH
Q ss_conf 9984146689999999999
Q gi|254781020|r 291 LKPAMDSSDAVVAAIESLR 309 (337)
Q Consensus 291 l~~~~~G~~gv~~~l~~l~ 309 (337)
++. .-+..+.+.+..+.
T Consensus 257 fQ~--~~P~~~~~Al~~iV 273 (291)
T PRK08227 257 FQS--DAPVAMIKAVHAVV 273 (291)
T ss_pred HCC--CCHHHHHHHHHHHH
T ss_conf 358--99899999999986
No 165
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.98 E-value=0.023 Score=32.28 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=88.8
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 12367998999987765089857625320356652068852430799999999873997178504786688999999976
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKS 206 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~a 206 (337)
++-...+++...+.....+.+++.+ .+.|.+. .+.+.+..+..+..++.- +.-.++.+..+...+.
T Consensus 104 Npi~~~Gie~F~~~~~~~GvdGliv-pDLP~ee------------~~~~~~~~~~~gi~~I~l-vaPtt~~~rl~~i~~~ 169 (265)
T COG0159 104 NPIFNYGIEKFLRRAKEAGVDGLLV-PDLPPEE------------SDELLKAAEKHGIDPIFL-VAPTTPDERLKKIAEA 169 (265)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHH
T ss_conf 1887735999999999759987985-7898667------------778999999769867988-6999998999999974
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 99799945888865100123102344323244310634688999998522898799729888889999999838885233
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
.-..|..-..-|.|++.... .-...+.+..+++.. ++||..-=||++..++.+.+.. ||.|-+
T Consensus 170 a~GFiY~vs~~GvTG~~~~~---------------~~~~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~-ADGVIV 232 (265)
T COG0159 170 ASGFIYYVSRMGVTGARNPV---------------SADVKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEA-ADGVIV 232 (265)
T ss_pred CCCCEEEEECCCCCCCCCCC---------------CHHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHH-CCEEEE
T ss_conf 79858999666666777653---------------046999999999744-8973874486999999999976-885797
Q ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHH
Q ss_conf 4799998414668-999999999999999
Q gi|254781020|r 287 ASPFLKPAMDSSD-AVVAAIESLRKEFIV 314 (337)
Q Consensus 287 Gr~~l~~~~~G~~-gv~~~l~~l~~el~~ 314 (337)
|+++...+..+.+ ....-+..+..+|+.
T Consensus 233 GSAiV~~i~~~~~~~~~~~~~~l~~~l~~ 261 (265)
T COG0159 233 GSAIVKIIEEGLDEEALEELRALVKELKA 261 (265)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 39999999955514469999999999998
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.94 E-value=0.013 Score=33.85 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=129.9
Q ss_pred HHHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCC
Q ss_conf 75688630324557899810174629989-89625686850126633430002569999999980990660520221128
Q gi|254781020|r 23 KKFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSD 101 (337)
Q Consensus 23 ~~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~ 101 (337)
-..|||+.|+|... .+.+++|||+|+|- +.+|++||+.|||+..+. ..+|.+.++.|..-++.-. ++.+
T Consensus 16 ~lTfDDVlLvP~~s-~v~p~~Vdl~t~lt~~i~L~iPivSs~MDTVTe-------~~MAiamA~~GGiGVIHrn--~sie 85 (499)
T PTZ00314 16 GLTYDDFIILPGYI-DFSADDVDLSGQLTKNIRLHIPIVSSPMDTVTE-------HKMAIAMALMGGIGVIHNN--CTVE 85 (499)
T ss_pred CCCCCCEEECCCCC-CCCHHHEEEEEECCCCCEECCCEEECCCCCCCC-------HHHHHHHHHCCCEEEECCC--CCHH
T ss_conf 61816568867888-778504174103248912078779678876568-------9999999977986998799--9999
Q ss_pred HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCH-----------------------HH
Q ss_conf 6688899999866401232202752123679989999877650898576253203-----------------------56
Q gi|254781020|r 102 HNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPL-----------------------QE 158 (337)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~ 158 (337)
+.......++... ..++ ..-..+.++.++.++.+..++.+..++.+.-+.. -.
T Consensus 86 ~Q~~~V~~VKr~e-~g~i---~dPit~~p~~ti~d~~~l~~~~~~sg~pVv~~g~~~gkL~GIvT~rD~~f~~d~~~~v~ 161 (499)
T PTZ00314 86 RQVEEVKKVKRFE-NGFI---MDPKSLSPEHTVSDVIEIKDKKGFSGIPITEDGRPGGKLLGIVTSKDIDFVKDKSTPVS 161 (499)
T ss_pred HHHHHHHHHHHHC-CCCC---CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCEECCCCCCCCHH
T ss_conf 9999999987630-6620---69827389862999997567518863679863886886899983620232306775888
Q ss_pred HHHHCC------CCCHHHHHHHHHH---------------------------------HHHHCCCCEEEEECCCCC-CHH
Q ss_conf 652068------8524307999999---------------------------------998739971785047866-889
Q gi|254781020|r 159 IIQPNG------NTNFADLSSKIAL---------------------------------LSSAMDVPLLLKEVGCGL-SSM 198 (337)
Q Consensus 159 ~~~~~~------~~~~~~~~~~i~~---------------------------------l~~~~~~pii~k~v~~~~-~~~ 198 (337)
..+... ....+...+.+.. .++..+...+.-.++... ..+
T Consensus 162 ~vMt~~lvt~~~~isl~eA~~ll~~~kieklpvVd~~g~L~glit~kDi~k~~~~P~a~~D~~grL~VgAAVg~~~~~~e 241 (499)
T PTZ00314 162 EIMTTDLVVGRYPITLEDANDVLNRSRKGVLPIVNDNGELVALVSRSDAVKNRDYPHASKDENKQLLVGAAISTREEDKE 241 (499)
T ss_pred HHHCCCCEEECCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCHHHHHHHCCCHHHHCCCCEEEEEEECCCCCHHH
T ss_conf 86156726725999999999999860331230665789589986303487753387122201387899999478804899
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 99999976997999458888651001231023443232443106346889999985228987997298888899999998
Q gi|254781020|r 199 DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSII 278 (337)
Q Consensus 199 ~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla 278 (337)
-++.++++|+|.++|+...|.+ ..+++++..+++...++||| .|.|-|..-+...+-
T Consensus 242 Ra~~Lv~aGvDvlvIDtAhGhs----------------------~~v~~~ik~ik~~~p~v~vI-aGNVaT~~~a~~Li~ 298 (499)
T PTZ00314 242 RAAALIDAGVDVLVLDSSQGNS----------------------IYQIDFIKWIKSTYPHLEVI-AGNVVTQDQAKNLID 298 (499)
T ss_pred HHHHHHHCCCCEEEEECCCCCC----------------------HHHHHHHHHHHHHCCCCCEE-EEEECHHHHHHHHHH
T ss_conf 9999998699899981688772----------------------78999999988527988467-643310999999997
Q ss_pred HCCCEEHHH
Q ss_conf 388852334
Q gi|254781020|r 279 LGASLGGLA 287 (337)
Q Consensus 279 lGAdaV~iG 287 (337)
.|||+|-+|
T Consensus 299 aGAD~vkVG 307 (499)
T PTZ00314 299 AGADGIRIG 307 (499)
T ss_pred CCCCEEEEC
T ss_conf 499879975
No 167
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=96.93 E-value=0.01 Score=34.32 Aligned_cols=55 Identities=16% Similarity=0.164 Sum_probs=34.7
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 50898576253203566520688524307999999998739-97178504786688999999976997999
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+-|-..+++++..++ -.+.|+.+++..+ .-+| +.|++.+++.++.|.++|||+++
T Consensus 31 egG~~~~EvTlRT~~-------------A~~aI~~l~~~~P~~~~i--GAGTVL~~~Q~~~A~~AGA~F~v 86 (205)
T TIGR01182 31 EGGLRVLEVTLRTPV-------------ALEAIRALRKEVPKDALI--GAGTVLNPEQLRQAVAAGAQFIV 86 (205)
T ss_pred HCCCEEEEEEECCCC-------------HHHHHHHHHHHCCCCCEE--CCCCCCCHHHHHHHHHCCCCEEE
T ss_conf 679808988514721-------------689999999728233487--16764898999999970895787
No 168
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=96.90 E-value=0.027 Score=31.91 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=94.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-...+.+...+.....+.+++.+ ++.|.+. .+.+.......+..++.- +.-.++.+.++...
T Consensus 94 Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~eE------------~~~~~~~~~~~~l~~I~l-vsPtt~~~Ri~~i~ 159 (258)
T pfam00290 94 YYNPVLNYGIERFYAQAAEAGVDGLII-PDLPPEE------------ADPLREAAEKHGIDLIFL-VAPTTSDERLKTIS 159 (258)
T ss_pred ECHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHH
T ss_conf 208898729999999999759977870-7999889------------999999998458435888-45888199999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
+..-.+|..-.+-|.|+.... ..-.....+..+++. .++||..-=||++..|+-+ ++-+||.|
T Consensus 160 ~~s~gFiY~vs~~GvTG~~~~---------------~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~-~~~~aDGv 222 (258)
T pfam00290 160 EAASGFVYLVSRAGVTGARNA---------------FNAQLDELVERLKKY-TNVPVAVGFGISTPEHVKK-IAAGADGV 222 (258)
T ss_pred HHCCCEEEEEECCCCCCCCCC---------------CCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHH-HHCCCCEE
T ss_conf 608980899853445676555---------------638899999999860-6998489945799999999-98159999
Q ss_pred HHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH
Q ss_conf 334799998414668---99999999999999999
Q gi|254781020|r 285 GLASPFLKPAMDSSD---AVVAAIESLRKEFIVSM 316 (337)
Q Consensus 285 ~iGr~~l~~~~~G~~---gv~~~l~~l~~el~~~m 316 (337)
-+|++++..+..+.+ -+.+.+..+..+|+...
T Consensus 223 IVGSaiv~~i~~~~~~~~~~~~~v~~fv~~lk~a~ 257 (258)
T pfam00290 223 IVGSAIVDIIEENLDDPEQMLAKLEEFVGKLKAAT 257 (258)
T ss_pred EECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98499999999704068899999999999999963
No 169
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=96.90 E-value=0.018 Score=32.90 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHHCCC--CEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC--CCHHHHH---------HHHHHHHHHHHH
Q ss_conf 99999852289--8799729888889999999838885233479999841--4668999---------999999999999
Q gi|254781020|r 248 SLEMARPYCNE--AQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM--DSSDAVV---------AAIESLRKEFIV 314 (337)
Q Consensus 248 al~~~~~~~~~--v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~--~G~~gv~---------~~l~~l~~el~~ 314 (337)
.+..+++. .+ |.-.+.|||.|+.|++-.+-||+|.|++|+...+..- .-++.+. +.+.....+|..
T Consensus 185 lv~~v~~~-grLPVvnFaAGGiATPADAALmMqLG~dGVFVGSGIFKS~dP~krA~AIV~Atthy~dp~~laevS~~Lge 263 (283)
T cd04727 185 LVKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTHYDDPEILAEVSEGLGE 263 (283)
T ss_pred HHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 99999997-89763664267858837799999728987887765457899999999999998465889999999704664
Q ss_pred HHHHCCCCCH
Q ss_conf 9998089857
Q gi|254781020|r 315 SMFLLGTKRV 324 (337)
Q Consensus 315 ~m~~~G~~~i 324 (337)
.|.-+...+|
T Consensus 264 aM~Gi~i~~l 273 (283)
T cd04727 264 AMVGIDIASL 273 (283)
T ss_pred CCCCCCHHHC
T ss_conf 6788881228
No 170
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=96.87 E-value=0.0046 Score=36.41 Aligned_cols=228 Identities=17% Similarity=0.149 Sum_probs=125.1
Q ss_pred HHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCH
Q ss_conf 5688630324557899810174629989-896256868501266334300025699999999809906605202211286
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDH 102 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~ 102 (337)
..|||+.|+|..-..-+.++|||+|+|. +.++++||+.|||+..+ +..+|.+.++.|...++.-. ++.++
T Consensus 3 LTfDDVlLvP~~S~~~sr~dVdl~t~lt~~i~l~iPivSA~MDTVT-------e~~MAiamA~~GGiGVIHrn--~sie~ 73 (467)
T pfam00478 3 LTFDDVLLLPGRSVLPSRSDVDLSTKLTRNITLNIPLVSANMDTVT-------ESRMAIAMAREGGIGVIHKN--MSIEE 73 (467)
T ss_pred CCCCCEEECCCCCCCCCCCCEEEEEECCCCCCCCCCEEECCCCCCC-------CHHHHHHHHHCCCEEEECCC--CCHHH
T ss_conf 7723278836866789801268446535995059988967999858-------89999999988988999689--99999
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHH-----------------------
Q ss_conf 688899999866401232202752123679989999877650898576253203566-----------------------
Q gi|254781020|r 103 NAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEI----------------------- 159 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 159 (337)
.......++.. ...+. .....+.++.++.++....+..+..++.+.-+.....
T Consensus 74 Q~~~V~~VK~~-e~g~i---~~Piti~p~~ti~~~~~l~~~~~~sg~pVv~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 149 (467)
T pfam00478 74 QAEEVRKVKRF-ESGFI---TDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRDIDFLSKVSVVMTM 149 (467)
T ss_pred HHHHHHHHHHC-CCCCC---CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEECCCCCCCCCCCCEEECC
T ss_conf 99999999743-36821---787536987659999999897287832682079746899877624433445432011013
Q ss_pred ----HHHCCCCCHHHHHHHH-----------------------HHHHHHCCCC---------E-EEEECCCCC-CHHHHH
Q ss_conf ----5206885243079999-----------------------9999873997---------1-785047866-889999
Q gi|254781020|r 160 ----IQPNGNTNFADLSSKI-----------------------ALLSSAMDVP---------L-LLKEVGCGL-SSMDIE 201 (337)
Q Consensus 160 ----~~~~~~~~~~~~~~~i-----------------------~~l~~~~~~p---------i-i~k~v~~~~-~~~~~~ 201 (337)
.............+.+ +.+......| + +.-.++... +.+-++
T Consensus 150 ~~~lvt~~~~~~~~ea~~~l~~~kieklpvvd~~g~L~glit~kDi~k~~~~P~a~~D~~grL~VgAAVG~~~~~~eRa~ 229 (467)
T pfam00478 150 TEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIEKARDYPNASKDAQGRLLVGAAVGTRDDDLERAE 229 (467)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCEECCCCCEEEEEEHHHHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHH
T ss_conf 55427724889989999999975564154446788378888743467742078522265677799998067865999999
Q ss_pred HHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 99976997999458888651001231023443232443106346889999985228987997298888899999998388
Q gi|254781020|r 202 LGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGA 281 (337)
Q Consensus 202 ~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGA 281 (337)
.+.++|+|.|+|+...|-+ ...++++..+++..++++|| .|.|-|+.-+...+-+||
T Consensus 230 ~Lv~aGvDvivIDtAhGhs----------------------~~vi~~ik~ik~~~p~~~iI-aGNVaT~e~a~~Li~aGA 286 (467)
T pfam00478 230 ALVEAGVDVIVIDSAHGHS----------------------EYVLEMIKWIKKKYPDLDVI-AGNVVTAEAARELIDAGA 286 (467)
T ss_pred HHHHCCCCEEEEECCCCCC----------------------HHHHHHHHHHHHCCCCCCEE-EEEECCHHHHHHHHHHCC
T ss_conf 9987699889973445441----------------------88999999987407877378-510058999999997077
Q ss_pred CEEHHH
Q ss_conf 852334
Q gi|254781020|r 282 SLGGLA 287 (337)
Q Consensus 282 daV~iG 287 (337)
|+|-+|
T Consensus 287 D~vKVG 292 (467)
T pfam00478 287 DAVKVG 292 (467)
T ss_pred CEEEEC
T ss_conf 757755
No 171
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.84 E-value=0.012 Score=33.85 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=29.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 898799729888889999999838885233479999
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
...++ +.|||++-.|+.+.-.+|++.|-+|+++..
T Consensus 188 ~~~~i-~aGGi~s~~Di~~L~~~G~~gaivG~Aly~ 222 (231)
T PRK13586 188 KGEKE-YAGGIGSIQDLQKLKKMGFDYAIVGMSFYA 222 (231)
T ss_pred CCCCE-EECCCCCHHHHHHHHHCCCCEEEEEHHHHC
T ss_conf 89959-986889999999998679988999978868
No 172
>PRK02145 consensus
Probab=96.81 E-value=0.0087 Score=34.77 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=22.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC-CCEEEECC
Q ss_conf 999999998739971785047866889999999769-97999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG-IRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG-ad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++...+.+.| ++++.+++
T Consensus 190 l~l~~~i~~~~~ipvIa--sGGi~s~~di~~~~~~~~~~av~~g~ 232 (257)
T PRK02145 190 LALTRAVSDAVPVPVIA--SGGVGSLQHLADGITEGHADAVLAAS 232 (257)
T ss_pred HHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 79999998626998999--86899999999999808984876532
No 173
>PRK13112 consensus
Probab=96.78 E-value=0.033 Score=31.35 Aligned_cols=162 Identities=12% Similarity=0.147 Sum_probs=90.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-...+.+...+.....+.+++.+ ++.|.+. ...+.......+..++. ++.-.++.+.++..
T Consensus 102 ~Y~N~i~~~G~e~F~~~~~~aGvdGvIi-pDLP~eE------------~~~~~~~~~~~~i~~I~-lvaPtt~~eRi~~i 167 (279)
T PRK13112 102 GYYNPIYIYGVERFLTDAKAAGVDGLIV-VDLPPEM------------DAELCIPAMKAGINFIR-LATPTTDDKRLPKV 167 (279)
T ss_pred EECHHHHHHCHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHH
T ss_conf 5124998847999999999739987984-6999788------------89999999857834699-82589989999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.+..-.+|..-..-|.|+..... .......+..++.. .++||..-=||++..|+ +.+..+||.
T Consensus 168 ~~~s~GFiY~Vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~-~~~~~~aDG 230 (279)
T PRK13112 168 LANTSGFVYYVSMTGITGSALAD---------------TSAVGEAVARIKRH-TDLPVCVGFGVKTPEQA-RAIAAHADG 230 (279)
T ss_pred HHCCCCCEEEEECCCCCCCCCCC---------------HHHHHHHHHHHHHH-CCCCCEEEECCCCHHHH-HHHHCCCCE
T ss_conf 85278808998356666766456---------------48899999999971-78987678356999999-999725999
Q ss_pred EHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHH
Q ss_conf 23347999984146-------6899999999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDS-------SDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 284 V~iGr~~l~~~~~G-------~~gv~~~l~~l~~el~~~m 316 (337)
|-+|+++...+... .+-+...+..+..+|+...
T Consensus 231 vIVGSAiVk~Ie~~~~~~~~~~~~~~~~v~~~~~~l~~g~ 270 (279)
T PRK13112 231 VVVGTAIVNALAGSLDEDGKATADTVAAVADLVAALAEGV 270 (279)
T ss_pred EEECHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987799999985467411004579999999999999999
No 174
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.77 E-value=0.0067 Score=35.45 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 899999852289879972988888999999983888523347999
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+.+..+++.-.++|+|.-||||+...+.+++.+|||.|-+|+.+-
T Consensus 164 e~V~~vk~~l~~~~LivGGGIrs~e~a~~~~~AgAD~IVvGn~ie 208 (219)
T cd02812 164 EVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCEE
T ss_conf 999999984679709992897999999999986999999887224
No 175
>PRK13134 consensus
Probab=96.75 E-value=0.035 Score=31.18 Aligned_cols=154 Identities=13% Similarity=0.099 Sum_probs=90.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+ .+.|.+. .+.+.......+...+. ++...++.+.++...
T Consensus 103 Y~N~i~~yG~e~F~~~~~~aGvdGvIi-pDLP~eE------------~~~~~~~~~~~gi~~I~-lvaPtt~~~Ri~~i~ 168 (257)
T PRK13134 103 YLNPFMQYGFERFVRDAADAGVAGCII-PDLPLDE------------DADLRALLAARGMDLIA-LVGPNTGEGRMREYA 168 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEEE-ECCCCCCHHHHHHHH
T ss_conf 345999746899999998679875994-6999778------------89999999975982699-638999999999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
+..-.+|..-.+-|.|+.... ........+..++.. .++||..-=||++..|+ +.+.-+||.|
T Consensus 169 ~~s~gFIY~vs~~GvTG~~~~---------------~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v-~~~~~~aDGv 231 (257)
T PRK13134 169 AVASGYVYVVSVMGTTGVRDG---------------LPVEVADTLARARQC-FSIPVALGFGISRPAQL-EGLSHPPDAV 231 (257)
T ss_pred HHCCCEEEEEECCCCCCCCCC---------------CHHHHHHHHHHHHHH-CCCCEEEECCCCCHHHH-HHHHCCCCEE
T ss_conf 628880899843556687645---------------528899999999970-69987998067999999-9997039999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 33479999841466899999999999
Q gi|254781020|r 285 GLASPFLKPAMDSSDAVVAAIESLRK 310 (337)
Q Consensus 285 ~iGr~~l~~~~~G~~gv~~~l~~l~~ 310 (337)
-+|++++.....+.+. ..+++.|.+
T Consensus 232 IVGSaiVk~i~~~gd~-a~~~k~~~~ 256 (257)
T PRK13134 232 IFGSALLRHLDAGGDA-ASFMKAWAE 256 (257)
T ss_pred EECHHHHHHHHHCCCH-HHHHHHHHC
T ss_conf 9879999999978988-999999740
No 176
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.73 E-value=0.037 Score=31.11 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=71.0
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
+...++..+...++ +++. .+.+.++.+.+.|+|.|.++--..+..-. . ....-++.+..+.+
T Consensus 94 ~~~ar~~~~~~~iI-G~S~-h~~eea~~A~~~g~DYv~~GpifpT~tK~---------~-------~~~~G~~~l~~~~~ 155 (211)
T COG0352 94 LAEARELLGPGLII-GLST-HDLEEALEAEELGADYVGLGPIFPTSTKP---------D-------APPLGLEGLREIRE 155 (211)
T ss_pred HHHHHHHCCCCCEE-EEEC-CCHHHHHHHHHCCCCEEEECCCCCCCCCC---------C-------CCCCCHHHHHHHHH
T ss_conf 58899741999789-8304-99999999876399999988867889998---------8-------77467899999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 22898799729888889999999838885233479999841466899999999999
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRK 310 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~ 310 (337)
. ..+|+++-|||. ...+-..+..||+.|.+-|+++.+ ..-+..+..+.+.+.+
T Consensus 156 ~-~~iP~vAIGGi~-~~nv~~v~~~Ga~gVAvvsai~~a-~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 156 L-VNIPVVAIGGIN-LENVPEVLEAGADGVAVVSAITSA-ADPAAAAKALRNALED 208 (211)
T ss_pred H-CCCCEEEECCCC-HHHHHHHHHHCCCEEEEHHHHHCC-CCHHHHHHHHHHHHHH
T ss_conf 2-799989984889-999999998298769726686607-9889999999999874
No 177
>PRK13135 consensus
Probab=96.72 E-value=0.038 Score=31.04 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=85.6
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 67998999987765089857625320356652068852430799999999873997178504786688999999976997
Q gi|254781020|r 130 YDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIR 209 (337)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad 209 (337)
..++.+.........+.+++.+ ++.|.+. .+.+.......+..++.- +...++.+-++...+..-.
T Consensus 106 ~~yG~e~F~~~~~~~GvdGlIi-pDLP~ee------------~~~~~~~~~~~~l~~I~l-vsPtt~~~Ri~~i~~~s~G 171 (267)
T PRK13135 106 FAYGLERFAADAAAAGVDGVLL-VDLPPEE------------AEEFKACADRHGLDVIFL-LTPTSDESRIRTVARLGRG 171 (267)
T ss_pred HHHHHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHCCCC
T ss_conf 8846899999999749974763-7899788------------899999998729618998-0898957999999961898
Q ss_pred EEE-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 999-4588886510012310234432324431063468-89999985228987997298888899999998388852334
Q gi|254781020|r 210 YFD-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 210 ~i~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
+|. |+..| .|+..... -..+ ..+..+++. .++||..-=||++..|+-+ +.-+||.|-||
T Consensus 172 FiY~Vs~~G-vTG~~~~~----------------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~-i~~~ADGvIVG 232 (267)
T PRK13135 172 FVYYVSVTG-VTGARSGV----------------EATVGGNVAKIREK-ITVPVVVGFGISTPQQAAD-VAAMADGVVVG 232 (267)
T ss_pred EEEEEECCC-CCCCCCCC----------------HHHHHHHHHHHHHH-CCCCEEEEECCCCHHHHHH-HHCCCCEEEEC
T ss_conf 189985456-66776444----------------48899999999860-6898489816799999999-98059999987
Q ss_pred HHHHHHHCCC--HH---HHHHHHHHHHHHHH
Q ss_conf 7999984146--68---99999999999999
Q gi|254781020|r 288 SPFLKPAMDS--SD---AVVAAIESLRKEFI 313 (337)
Q Consensus 288 r~~l~~~~~G--~~---gv~~~l~~l~~el~ 313 (337)
++++..+... .+ -+.+++..|+..|+
T Consensus 233 SaiVk~ie~~~~~~~~~~i~~fv~~lk~ai~ 263 (267)
T PRK13135 233 SALVKLFELHRGEELRQEVATFVASLRQAIP 263 (267)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999860818789999999999999975
No 178
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=96.71 E-value=0.038 Score=31.03 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=113.9
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEECCCCHHHHHHHCC-----CCCHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 40123220275212367998999987765-089857625320356652068-----852430799999999873997178
Q gi|254781020|r 115 PHTVLISNLGAVQLNYDFGVQKAHQAVHV-LGADGLFLHLNPLQEIIQPNG-----NTNFADLSSKIALLSSAMDVPLLL 188 (337)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~~pii~ 188 (337)
...++..+++...+ .......+..+. .++|-+-+++.||-.-+.... .....-+.+-++.-++.+..||-+
T Consensus 53 ~E~PvAlQlgg~dp---~~l~~ca~i~e~h~gydEiNLNVGCPSdrvQng~fGACLMg~a~lVa~cv~~M~~~v~iPvtv 129 (326)
T TIGR00742 53 EEKPVALQLGGSDP---NDLAKCAKIAEKHRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVEIPVTV 129 (326)
T ss_pred CCCCEEEEECCCCH---HHHHHHHHHHHHHCCCCEEECCCCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 77865785078988---999999999986458742215668831222044411111168236899999989715788224
Q ss_pred E---ECCCC------CCHHHHHHHHHCCCCEEEECCCC-CCCCCCHHHHCCCCCCCCHHHHHCCCCHHH--HHHHHHHHC
Q ss_conf 5---04786------68899999997699799945888-865100123102344323244310634688--999998522
Q gi|254781020|r 189 K---EVGCG------LSSMDIELGLKSGIRYFDIAGRG-GTSWSRIESHRDLESDIGIVFQDWGIPTPL--SLEMARPYC 256 (337)
Q Consensus 189 k---~v~~~------~~~~~~~~a~~aGad~i~v~~~g-G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~--al~~~~~~~ 256 (337)
| ++-.- ..+++...-++. |++.| ...+ +.+.|..+-.-.++-....||++. .+...+.-.
T Consensus 130 K~RiGId~~ssdykndSYe~l~~Fv~~------v~~~Gec~~F--ivHARkAwL~GlSPKeNR~IPpL~y~~VYqLKkdf 201 (326)
T TIGR00742 130 KHRIGIDELSSDYKNDSYEELCDFVEI------VSGKGECQNF--IVHARKAWLSGLSPKENREIPPLRYERVYQLKKDF 201 (326)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHH------HHCCCCCCHH--HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 201475644332232337899999998------6178861134--68789998578886225787798724677652003
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH-----HHHH------------CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8987997298888899999998388852334799-----9984------------14668999999999999999999
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPF-----LKPA------------MDSSDAVVAAIESLRKEFIVSMF 317 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~-----l~~~------------~~G~~gv~~~l~~l~~el~~~m~ 317 (337)
....|-..|||.+-..+=+-|.- -|+|||||.. +.+. ..-.+-|.+++.-+.++++....
T Consensus 202 p~L~i~INGGI~~~E~~k~HL~~-vD~VMvGR~Ay~NP~l~A~~dr~~~~~~~~~~~~~~i~~~M~pYie~~l~~g~~ 278 (326)
T TIGR00742 202 PHLTIEINGGIKNSEQIKQHLSH-VDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEERLSQGLS 278 (326)
T ss_pred CCCEEEECCCCCCHHHHHHHHHH-HHHHHHCHHHHHCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCH
T ss_conf 21056335785535999976556-431130224300526899998997077877779799999867999999743622
No 179
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=96.71 E-value=0.023 Score=32.34 Aligned_cols=68 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Q ss_conf 89999999769979994588886510012310234432324431063468899999852289879972988888999999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKS 276 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kA 276 (337)
.+-+..+.++|+|.++|+...|.+ ...++.+..++....++||| .|++-|..-+...
T Consensus 155 ~era~~Lv~AGvD~lvID~AhGhs----------------------~~~~e~ik~ik~~~p~v~VI-aGNVaT~~~a~~L 211 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHS----------------------TRIIELVKTIKNKYPNLDLI-AGNIVTKEAALDL 211 (404)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCH----------------------HHHHHHHHHHHHHCCCCCEE-ECCCCCHHHHHHH
T ss_conf 999999997699999996887521----------------------78999999999767996166-3030579999999
Q ss_pred HHHCCCEEHHH
Q ss_conf 98388852334
Q gi|254781020|r 277 IILGASLGGLA 287 (337)
Q Consensus 277 lalGAdaV~iG 287 (337)
+-.|||+|-+|
T Consensus 212 i~aGAD~VkVG 222 (404)
T PRK06843 212 INVGADCLKVG 222 (404)
T ss_pred HHHCCCEEEEC
T ss_conf 98198999956
No 180
>PRK02747 consensus
Probab=96.71 E-value=0.011 Score=34.26 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=25.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 999999998739971785047866889999999-76997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL-KSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~-~aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++...+. ..+++++.+++
T Consensus 189 l~l~~~i~~~~~~pvIa--sGGv~~~~di~~~~~~~~~~av~~g~ 231 (257)
T PRK02747 189 LPLTRAIADAVRVPVIA--SGGVGTLDHLVEGVRDGHATAVLAAS 231 (257)
T ss_pred HHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 69999998607998999--77999999999999838984998832
No 181
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative; InterPro: IPR005270 The function of this family is unknown, but it may include TIM-barrel proteins..
Probab=96.70 E-value=0.028 Score=31.83 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=88.8
Q ss_pred HCCCEEEECCCCHHHHHHHCCCCC-----HHHHHHHHHHHHHHCCCCEEEEECCCCCC---HHHHHHHHHCCCCEEEECC
Q ss_conf 089857625320356652068852-----43079999999987399717850478668---8999999976997999458
Q gi|254781020|r 144 LGADGLFLHLNPLQEIIQPNGNTN-----FADLSSKIALLSSAMDVPLLLKEVGCGLS---SMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~l~~~~~~pii~k~v~~~~~---~~~~~~a~~aGad~i~v~~ 215 (337)
.-.|-++++-+|-|.-....|-.. ...+.+.+.........|+.+|.=+|+.. ...+..+.++|+|+|-|+-
T Consensus 93 e~~diiEiNaHCRQPEiteiG~Gq~ll~n~e~L~ef~~k~~G~~~~p~fvKIRgN~~~ld~~~~a~~l~d~g~d~iHvDa 172 (234)
T TIGR00736 93 EFADIIEINAHCRQPEITEIGIGQELLKNKELLKEFVAKVKGKLRKPVFVKIRGNVIKLDELKVARKLVDAGVDAIHVDA 172 (234)
T ss_pred HHCCEEEECCCCCCCCEEEECCCHHHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 11373788575889761550565354238025788875303431472378971578751035787898873235555432
Q ss_pred C-CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8-88651001231023443232443106346889999985228987997298888899999998388852334799998
Q gi|254781020|r 216 R-GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 216 ~-gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
. .|..-++ .+.+..+.++.++--||+.=-|++=.-+-+.|+.|||+|-+.|+.|..
T Consensus 173 m~PG~~~aD----------------------~~l~~~~se~~nD~I~IGNNS~~dIE~a~~~l~aGad~vSvARa~l~g 229 (234)
T TIGR00736 173 MKPGEDRAD----------------------LDLVKLVSEVKNDKIVIGNNSVDDIESAKEMLKAGADAVSVARAVLKG 229 (234)
T ss_pred ECCCCCCCC----------------------HHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 259369367----------------------899999887618857980687103688999998401589999998611
No 182
>PRK13114 consensus
Probab=96.67 E-value=0.041 Score=30.83 Aligned_cols=155 Identities=13% Similarity=0.091 Sum_probs=85.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 23679989999877650898576253203566520688524307999999998739971785047866889999999769
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG 207 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG 207 (337)
.-...+.+...+.....+.+++.+ ++.|.+. ...+.......+..++.- +.-.++.+-.+...+..
T Consensus 101 ~i~~~G~~~F~~~~~~aGvdG~Ii-pDLP~eE------------~~~~~~~~~~~gi~~I~l-iaPtt~~~Ri~~i~~~a 166 (266)
T PRK13114 101 PMVRRGPDWFAAECKKAGVDGVIC-VDIPPEE------------DAELGPALRAAGIDPIRL-ATPTTDAARLPAVLEGA 166 (266)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHC
T ss_conf 999864999999999749977984-5899788------------899999999749972677-56999799999999738
Q ss_pred CCEEE-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 97999-4588886510012310234432324431063468-899999852289879972988888999999983888523
Q gi|254781020|r 208 IRYFD-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 208 ad~i~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
-.+|. |+..| .|+..... ...+ ..+..+++. .++||..-=||++..|+ +.++-.||.|-
T Consensus 167 ~gFiY~vs~~G-vTG~~~~~----------------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~-~~~~~~ADGvI 227 (266)
T PRK13114 167 SGFLYYVSVAG-ITGMQQAA----------------QASIEAAVARIKAA-TDLPVAVGFGVRTPEQA-AAIARVADGVV 227 (266)
T ss_pred CCCEEEEECCC-CCCCCCCC----------------HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHH-HHHHHCCCEEE
T ss_conf 99589984455-66776566----------------58899999999970-79986998366989999-99980099999
Q ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 34799998414-66899999999999999999
Q gi|254781020|r 286 LASPFLKPAMD-SSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 286 iGr~~l~~~~~-G~~gv~~~l~~l~~el~~~m 316 (337)
||++++..+.+ |.+. ...++.+..+|+...
T Consensus 228 VGSaiVk~I~e~~~~~-~~~v~~~~k~l~~~i 258 (266)
T PRK13114 228 VGSAFVDLIGEHGADA-AAPVEELTKTLADAI 258 (266)
T ss_pred ECHHHHHHHHHCCCCH-HHHHHHHHHHHHHHH
T ss_conf 8199999998737155-689999999999999
No 183
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=96.67 E-value=0.0075 Score=35.17 Aligned_cols=229 Identities=18% Similarity=0.172 Sum_probs=129.0
Q ss_pred HHHHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHC
Q ss_conf 475688630324557899810174629989-8962568685012663343000256999999998099066052022112
Q gi|254781020|r 22 NKKFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFS 100 (337)
Q Consensus 22 n~~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~ 100 (337)
.-..|||+.|+|.. +++.+++|||+|+|. +.+|++||+.|||+..+. ..+|.+.++.|...++.-. ++.
T Consensus 7 ~~LTfDDVlLvP~~-s~v~p~dVdl~t~lt~~i~L~iPivSS~MDTVTe-------~~MAiamA~~GGlGVIHrn--~si 76 (486)
T PRK05567 7 EALTFDDVLLVPAH-SEVLPNDVDLSTQLTKNIRLNIPLLSAAMDTVTE-------ARLAIAMAQEGGIGVIHKN--MSI 76 (486)
T ss_pred CCCCCCCEEECCCC-CCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCC-------HHHHHHHHHCCCEEEECCC--CCH
T ss_conf 56580337886787-7767672252036248913288778678766578-------9999999988987999899--999
Q ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCC--------------------HHHHH
Q ss_conf 8668889999986640123220275212367998999987765089857625320--------------------35665
Q gi|254781020|r 101 DHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNP--------------------LQEII 160 (337)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 160 (337)
++.......++.. ...++ ..-..+.++.++.++.+..++.+..++.+.-+. +-...
T Consensus 77 e~Q~~~V~~VKr~-e~g~i---~~P~tl~P~~tv~d~~~l~~~~~~sg~PVv~~~~kL~GiiT~rD~~f~~~~~~~V~~v 152 (486)
T PRK05567 77 EEQAEEVRKVKRS-ESGVV---TDPVTVTPDTTLAEALALMARYGISGVPVVDEEGKLVGIITNRDVRFETDLSQPVSEV 152 (486)
T ss_pred HHHHHHHHHHHHH-HCCCC---CCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCEECCCCCCCCHHHH
T ss_conf 9999999999753-06713---7986768988899999999972878614876799478886142011002677654675
Q ss_pred HHCC-------CCCHHHHHHHH-----------------------HHHHHHCCCCE----------EEEECCC-CCCHHH
Q ss_conf 2068-------85243079999-----------------------99998739971----------7850478-668899
Q gi|254781020|r 161 QPNG-------NTNFADLSSKI-----------------------ALLSSAMDVPL----------LLKEVGC-GLSSMD 199 (337)
Q Consensus 161 ~~~~-------~~~~~~~~~~i-----------------------~~l~~~~~~pi----------i~k~v~~-~~~~~~ 199 (337)
+... ....+...+.+ +.+.+....|. +.-.++. ..+.+-
T Consensus 153 MT~~~lvt~~~~is~~eA~~~l~~~kieklPvVd~~g~L~Glit~kDi~k~~~~P~A~~D~~grL~VgAAVg~~~~~~eR 232 (486)
T PRK05567 153 MTKERLVTVPEGTTLEEALELLHEHRIEKLLVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGVGADNEER 232 (486)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHH
T ss_conf 34573289258899999999999731303427746896888877667776520885123666888999996268018999
Q ss_pred HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 99999769979994588886510012310234432324431063468899999852289879972988888999999983
Q gi|254781020|r 200 IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIIL 279 (337)
Q Consensus 200 ~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlal 279 (337)
++.+.++|+|.++|+...|.+ ..+++++..++....+++|| .|.+-|..-+...+-.
T Consensus 233 a~~Lv~AGvDvivIDtAhGhs----------------------~~vi~~ik~ik~~~~~v~vi-aGNv~T~~~a~~L~~a 289 (486)
T PRK05567 233 AEALVKAGVDVLVVDTAHGHS----------------------EGVLDRVREIKAKYPDVQII-AGNVATAEAARALIEA 289 (486)
T ss_pred HHHHHHCCCCEEEEECCCCCH----------------------HHHHHHHHHHHHCCCCCCEE-EEEECHHHHHHHHHHC
T ss_conf 999997699889950445215----------------------77899999997407877368-7512019999999972
Q ss_pred CCCEEHHH
Q ss_conf 88852334
Q gi|254781020|r 280 GASLGGLA 287 (337)
Q Consensus 280 GAdaV~iG 287 (337)
|||+|-+|
T Consensus 290 GaD~vkVG 297 (486)
T PRK05567 290 GADAVKVG 297 (486)
T ss_pred CCCEEEEC
T ss_conf 98769965
No 184
>PRK01659 consensus
Probab=96.66 E-value=0.011 Score=34.18 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 999999998739971785047866889999999-76997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL-KSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~-~aGad~i~v~~ 215 (337)
.+.++.+++.++.|+++ .|.+.+.++...+. ..+++++.+++
T Consensus 186 l~l~~~i~~~~~~PiIa--sGGi~~~~di~~l~~~~~v~gv~~g~ 228 (252)
T PRK01659 186 LRLTKAISEAVSVPVIA--SGGAGNADHMVEVFQKTTADAALAAS 228 (252)
T ss_pred HHHHHHHHHHCCCCEEE--EECCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 89999999868999999--91799999999999748982655754
No 185
>PRK13137 consensus
Probab=96.60 E-value=0.045 Score=30.56 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=89.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+. +.|.+. .+.+.......+...+.- +.-.++.+.++...
T Consensus 108 Y~N~i~~yG~e~F~~~a~~aGvdGlIip-DLP~eE------------~~~~~~~~~~~gi~~I~l-vaPtT~~eRi~~i~ 173 (266)
T PRK13137 108 YLNPIYAVGPEEFMRLFQEAGVDGLILP-DLPPDQ------------DPEIADLAAEIGLAVTFL-IAPTSTPERVKLVA 173 (266)
T ss_pred CHHHHHHHCHHHHHHHHHHCCCCEEEEC-CCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHH
T ss_conf 4589987589999999997696099947-999788------------899999998759978999-37999999999999
Q ss_pred HCCCCEEE-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH-HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 76997999-45888865100123102344323244310634688-99999852289879972988888999999983888
Q gi|254781020|r 205 KSGIRYFD-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL-SLEMARPYCNEAQFIASGGLRNGVDILKSIILGAS 282 (337)
Q Consensus 205 ~aGad~i~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~-al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAd 282 (337)
+..-.+|. ||-.|- |+.... .....+. .+..++.. .++||..-=||++..|+-+.... ||
T Consensus 174 ~~a~GFiY~Vs~~Gv-TG~r~~---------------~~~~~l~~~i~~ik~~-t~~Pv~vGFGIs~~e~~~~~~~~-aD 235 (266)
T PRK13137 174 RACTGFLYAVSVTGV-TGMREG---------------LALGEVPDMLRLARQY-AALPVAVGFGVKDKATAAQVAQV-AD 235 (266)
T ss_pred HHCCCCEEEEECCCC-CCCCCC---------------CCHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHH-CC
T ss_conf 608882899744676-677766---------------7879999999999863-89987998266988999999831-99
Q ss_pred EEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 523347999984146689999999999999999
Q gi|254781020|r 283 LGGLASPFLKPAMDSSDAVVAAIESLRKEFIVS 315 (337)
Q Consensus 283 aV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~ 315 (337)
.|-+|+++...+.+|.+ +. .+.+||+..
T Consensus 236 GvIVGSaiV~~i~e~~d-~~----~~~~el~~~ 263 (266)
T PRK13137 236 GVVVGSAFINAVEEGRD-VA----ALAQEIAAG 263 (266)
T ss_pred EEEEHHHHHHHHHHCCC-HH----HHHHHHHHH
T ss_conf 99980999999995898-99----999999987
No 186
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=96.60 E-value=0.033 Score=31.37 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=32.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 9852289879972988888999999983888523347999
Q gi|254781020|r 252 ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 252 ~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
++.+..+.++|.-||||++..+.+...+|||.+-+|+.+-
T Consensus 185 v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iie 224 (240)
T COG1646 185 VSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIE 224 (240)
T ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCEEE
T ss_conf 9986145508985884989999999971799899770020
No 187
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=96.55 E-value=0.023 Score=32.33 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++.+.+.+.|++++.++.
T Consensus 180 ~~l~~~i~~~~~~pii~--~GGv~~~~di~~l~~~g~~gvivg~ 221 (229)
T pfam00977 180 LELTRELAEAVNIPVIA--SGGVGSLEDLKELFSEGVDGVIAGS 221 (229)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf 99999999768998999--8589999999999987998999857
No 188
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.55 E-value=0.049 Score=30.37 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=63.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
+..+|...+...++ ++ +..+.+.+..+.+.|+|.+.++----+.. .+.. .-..|+.. +....+
T Consensus 93 ~~~~r~~l~~~~ii-G~-S~h~~~e~~~A~~~gaDYi~~Gpvf~T~t-----------K~~~-~~~~g~~~---l~~~~~ 155 (210)
T PRK00043 93 VADARAILGPDAII-GV-STHTLEEAAAAAAAGADYVGVGPIFPTPT-----------KKDA-KPAVGLEL---LREARE 155 (210)
T ss_pred HHHHHHHCCCCCEE-EE-ECCCHHHHHHHHHHCCCEEEECCCCCCCC-----------CCCC-CCCCCHHH---HHHHHH
T ss_conf 99999751988789-98-47999999999882898388745214798-----------8888-77789999---999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 228987997298888899999998388852334799998
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
..++||++-||| +..++...+..||+.|.+-+.++.+
T Consensus 156 -~~~iPvvAIGGI-~~~ni~~~~~~Ga~giAvis~I~~a 192 (210)
T PRK00043 156 -AIDIPIVAIGGI-TPENAAEVLEAGADGVAVVSAITAA 192 (210)
T ss_pred -HCCCCEEEECCC-CHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf -479998998088-9999999998099999970897769
No 189
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.55 E-value=0.044 Score=30.64 Aligned_cols=98 Identities=17% Similarity=0.091 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCH
Q ss_conf 52430799999999873997178504786688999999976997999458888651001231023443232443106346
Q gi|254781020|r 166 TNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPT 245 (337)
Q Consensus 166 ~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~ 245 (337)
..+....+.++.++...+.+.+...+ .+.+.++.++++|+|.|-++|..- +. +
T Consensus 165 i~~~~~~~av~~~r~~~~~~~IeVEv---~~lee~~~a~~~g~d~I~LDn~s~------e~----------------~-- 217 (279)
T PRK08385 165 LALVPLEEAIRRAKEFSVYKVVEVEV---ESLEDALKAAKAGADIIMLDNMTP------EE----------------I-- 217 (279)
T ss_pred HHHCCHHHHHHHHHHHCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH------HH----------------H--
T ss_conf 76438899999999848996189970---989999999976999999849999------99----------------9--
Q ss_pred HHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 889999985--2289879972988888999999983888523347999
Q gi|254781020|r 246 PLSLEMARP--YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 246 ~~al~~~~~--~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
..++...++ .++++.+.++|||. -..+.+.-..|.|++.+|.+..
T Consensus 218 ~~~v~~l~~~~~~~~v~ieaSGGI~-~~ni~~ya~tGVD~IS~g~lt~ 264 (279)
T PRK08385 218 REVIEALKELGLREKVKIEVSGGIT-PETIAEYAKLDVDVISLGALTH 264 (279)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHHC
T ss_conf 9999998750768978999978998-9999999855989998497776
No 190
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.55 E-value=0.037 Score=31.11 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=14.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 87997298888899999998388852334799
Q gi|254781020|r 259 AQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 259 v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
+||...||||+-.|+-++|.+||+-|-+||.+
T Consensus 73 ~piqvGGGIrs~e~~~~~l~~Ga~kViigS~a 104 (231)
T PRK13586 73 SWIQVGGGIRDVEKAERLLSYDCSAIVMSTLP 104 (231)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 85798567176999999997799889976888
No 191
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.55 E-value=0.049 Score=30.36 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=91.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-...+.+...+.....+.+++.+. +.|.+. .+.........+...+. .+.-.++.+..+..
T Consensus 83 ~Y~N~i~~~G~e~F~~~~~~~Gv~Gviip-DLP~ee------------~~~~~~~~~~~~i~~I~-lvsPtt~~~ri~~i 148 (242)
T cd04724 83 GYYNPILQYGLERFLRDAKEAGVDGLIIP-DLPPEE------------AEEFREAAKEYGLDLIF-LVAPTTPDERIKKI 148 (242)
T ss_pred EECHHHHHHCHHHHHHHHHHCCCCEEEEC-CCCHHH------------HHHHHHHHHHCCCEEEE-EECCCCCHHHHHHH
T ss_conf 84457665289999999997599758706-999578------------46899999865983889-96898878999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.+..-..|..-..-|.|+..... .......+..+++. .++||..-=||++..|+-+.... ||.
T Consensus 149 ~~~s~gfiY~vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~~~~~-aDG 211 (242)
T cd04724 149 AELASGFIYYVSRTGVTGARTEL---------------PDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY-ADG 211 (242)
T ss_pred HHHCCCEEEEEECCCCCCCCCCC---------------HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH-CCE
T ss_conf 97479849998577777877556---------------49999999999871-68974874387999999999965-999
Q ss_pred EHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
Q ss_conf 23347999984146-6899999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDS-SDAVVAAIESLRKEFI 313 (337)
Q Consensus 284 V~iGr~~l~~~~~G-~~gv~~~l~~l~~el~ 313 (337)
|-+|++++....++ .+...+.+..+.++|+
T Consensus 212 vIVGSa~V~~i~~~~~~~~~~~~~~~~~~lk 242 (242)
T cd04724 212 VIVGSALVKIIEEGGEEEALEALKELAESLK 242 (242)
T ss_pred EEECHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 9987899999996396889999999999729
No 192
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.55 E-value=0.049 Score=30.35 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 899998776508985762532035665206885243079999999987399717850478668899999997-6997999
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLK-SGIRYFD 212 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~-aGad~i~ 212 (337)
..+..+..+..+++++.+|.......... ..-|+.++.+++..+.|++. -|.+.++++++.+.+ .|+|+|-
T Consensus 151 ~~~~~~~~e~aG~~~itvHgRT~~q~y~g------~adw~~i~~vk~~~~iPvi~--NGDI~~~~da~~~l~~tg~dgvM 222 (321)
T PRK10415 151 CEEIAQLAEDCGIQALTIHGRTRACLFNG------EAEYDSIRAVKQKVSIPVIA--NGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HHHHHHHHHHCCCCEEEEEHHHHHHHHCC------CCCHHHHHHHHHCCCCCEEE--CCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 99999999856988999972213443169------98779999998547997896--58919999999999862999999
Q ss_pred ECC-CCCCCC
Q ss_conf 458-888651
Q gi|254781020|r 213 IAG-RGGTSW 221 (337)
Q Consensus 213 v~~-~gG~~~ 221 (337)
++- .-|..|
T Consensus 223 igRgal~nPw 232 (321)
T PRK10415 223 IGRAAQGRPW 232 (321)
T ss_pred ECHHHHCCCH
T ss_conf 7566536987
No 193
>PRK13119 consensus
Probab=96.53 E-value=0.05 Score=30.30 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=92.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+. +.|.+. .+.+....+..+...+.- +.-.++.+-.+...
T Consensus 100 Y~N~i~~yG~e~F~~~~~~~GvdGvIip-DLP~ee------------~~~~~~~~~~~gl~~I~l-vaPtt~~~Ri~~i~ 165 (261)
T PRK13119 100 YLNPVHKMGYREFAQEAAKAGVDGVLTV-DSPVET------------IDPLYRELKDNGVDCIFL-IAPTTTEDRIKTIA 165 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHH
T ss_conf 0378988629999999997598579836-899788------------799999999759976443-07999899999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 769979994588886510012310234432324431063468-8999998522898799729888889999999838885
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
+..-.+|..-.+-|.|+.... . ...+ ..+..+++. .++||..-=||++..|+-+ +.-+||.
T Consensus 166 ~~a~gFiY~vs~~GvTG~~~~-----~-----------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~-~~~~aDG 227 (261)
T PRK13119 166 ELAGGFVYYVSLKGVTGAASL-----D-----------TDEVSRKIEYLHQY-IDIPIGVGFGISNAESARK-IGRVADA 227 (261)
T ss_pred HHCCCEEEEEECCCCCCCCCC-----C-----------HHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHH-HHCCCCE
T ss_conf 728981999736666687755-----5-----------48899999999863-6998799836599999999-8734999
Q ss_pred EHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 233479999841466899999999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 284 V~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m 316 (337)
|-+|+++...+..+.+--...+..+..||+..+
T Consensus 228 vIVGSaiV~~i~~~~~~~~~~v~~~vk~lk~a~ 260 (261)
T PRK13119 228 VIVGSRIVKEIENNAGNEAAAVGALVKELKDAV 260 (261)
T ss_pred EEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 998289999998668876899999999999863
No 194
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.52 E-value=0.051 Score=30.25 Aligned_cols=44 Identities=20% Similarity=0.165 Sum_probs=34.1
Q ss_pred HHHHHHHHCCCCE--EEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 9999985228987--99729888889999999838885233479999
Q gi|254781020|r 248 SLEMARPYCNEAQ--FIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 248 al~~~~~~~~~v~--IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
.+..++.. .+.| -.+.|||.|+.|++-.+-||||.|++|+...+
T Consensus 197 lv~~~~~~-grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 197 LVKEVAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 99999983-98874742256768816799999818984786564337
No 195
>PRK13118 consensus
Probab=96.52 E-value=0.051 Score=30.23 Aligned_cols=161 Identities=14% Similarity=0.121 Sum_probs=87.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+ ++.|.+. .+.+.......+..++.- +...++.+-.+...
T Consensus 102 Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~ee------------~~~~~~~~~~~gl~~I~l-vaPtt~~~Ri~~i~ 167 (269)
T PRK13118 102 YLNPIEIYGYERFVAQAKEAGVDGLIL-VDLPPEE------------ADELRAPAQAHGLDFIRL-TSPTTSDERLPRVL 167 (269)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCHHEE-ECCCCCHHHHHHHH
T ss_conf 000787863999999999859974645-8999789------------999999999759846403-69898789999998
Q ss_pred HCCCCEEE-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 76997999-45888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 205 KSGIRYFD-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 205 ~aGad~i~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
+..-.+|. ||-.| .|+.... .. -.....+..+++. .++||..-=||++..|+ +.+.-.||.
T Consensus 168 ~~a~gFiY~vs~~G-vTG~~~~-----~~----------~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~-~~v~~~aDG 229 (269)
T PRK13118 168 EHASGYLYYVSLAG-VTGAAAL-----DT----------EHVEEAVARLRRH-TDLPVVVGFGIRDAESA-AAIARLADG 229 (269)
T ss_pred HCCCCCEEEEECCC-CCCCCCC-----CH----------HHHHHHHHHHHHH-CCCCEEEEECCCCHHHH-HHHHCCCCE
T ss_conf 43788389985456-6787766-----71----------9899999999962-58981787167999999-999800999
Q ss_pred EHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 233479999841466--8999999999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDSS--DAVVAAIESLRKEFIVSMF 317 (337)
Q Consensus 284 V~iGr~~l~~~~~G~--~gv~~~l~~l~~el~~~m~ 317 (337)
|-+|++++..+.++. +-..+-+..+..|||..+.
T Consensus 230 vIVGSa~Vk~i~~~~~~~~~~~~~~~~~k~lk~al~ 265 (269)
T PRK13118 230 VVVGSALVDAIAEAKDVDQAVERVLALLAELRQALD 265 (269)
T ss_pred EEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 998589999998567826799999999999999998
No 196
>COG0516 GuaB IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.51 E-value=0.0016 Score=39.08 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=49.4
Q ss_pred HHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHH-HHHHCCEEECCCCHH
Q ss_conf 5688630324557899810174629989-8962568685012663343000256999999-998099066052022
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIA-AEKTKVAMAVGSQRV 97 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~a-a~~~g~~~~~g~~~~ 97 (337)
..|||+.++|.. +.+..+++|++|.+. |..+..|++.|+|+..+.. .+|.+ ++..|+....+++..
T Consensus 15 ltfddVll~p~~-s~v~p~~~~vkt~i~~~i~l~iP~vSA~MDtVtea-------~mAI~ma~~GGIGVih~nm~~ 82 (170)
T COG0516 15 LTFDDVLLLPAA-SDVAPAGVDVKTGLGPGIGVNIPQVSAAMDTVTEA-------RMAIAMARDGGIGVMHGNMLA 82 (170)
T ss_pred EEECCEEECHHH-HHCCCCCCEEEECCCCCCCCCCCEEEHHHHHHHHH-------HHHHHHHHCCCEEEEECCCCH
T ss_conf 457448753334-54033788267543599402855032267899989-------887999986987999688577
No 197
>PRK02621 consensus
Probab=96.51 E-value=0.015 Score=33.46 Aligned_cols=42 Identities=12% Similarity=0.070 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHH-HHHCCCCEEEECC
Q ss_conf 9999999987399717850478668899999-9976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIEL-GLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~-a~~aGad~i~v~~ 215 (337)
.+.++.+.+.++.|+++ .|.+.+.++... +...+++++++++
T Consensus 187 ~~l~~~i~~~~~iPvi~--sGGi~s~edi~~~l~~~~v~gvivG~ 229 (254)
T PRK02621 187 LELTRAIAEAVEIPVIA--SGGAGCCDHIAEALTEGKAEAALLAS 229 (254)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCEEEEEHH
T ss_conf 69999999717997999--77999999999999858981987757
No 198
>PRK13113 consensus
Probab=96.49 E-value=0.053 Score=30.15 Aligned_cols=158 Identities=14% Similarity=0.097 Sum_probs=90.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-...+.+...+.....+.+++.+ ++.|.+. .+.+.......+..++. ++...++.+-.+...
T Consensus 102 Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~eE------------~~~~~~~~~~~~l~~I~-lvaPtt~~~Ri~~i~ 167 (263)
T PRK13113 102 YYNPIYSRGVDRFLAEAKEAGIDGLIV-VDLPPEE------------DSELCLPAQAAGLNFIR-LATPTTDDRRLPKVL 167 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCEEEE-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHH
T ss_conf 136898856999999987779436971-7999788------------89999999977986799-947999999999998
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
+..-.+|..-..-|.|+..... .......+..+++. .++||..-=||.+..|+ +.+.-+||.|
T Consensus 168 ~~a~gFiY~Vs~~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~~-~~~~~~ADGv 230 (263)
T PRK13113 168 QNTSGFVYYVSITGITGAAAAQ---------------AADVAPEVARIKAA-TDLPVIVGFGITTPEAA-QAIAGVADGC 230 (263)
T ss_pred HCCCCCEEEEECCCCCCCCCCC---------------HHHHHHHHHHHHHC-CCCCEEEECCCCCHHHH-HHHHCCCCEE
T ss_conf 3389848998345566877554---------------37799999999854-79988998378998999-9997339999
Q ss_pred HHHHHHHHHHCCCH--HHHHHHHHHHHHHHH
Q ss_conf 33479999841466--899999999999999
Q gi|254781020|r 285 GLASPFLKPAMDSS--DAVVAAIESLRKEFI 313 (337)
Q Consensus 285 ~iGr~~l~~~~~G~--~gv~~~l~~l~~el~ 313 (337)
-+|++++..+.+|. +.+.+++..|++.++
T Consensus 231 IVGSa~v~~i~e~~~~~~~~~~v~~l~~~~~ 261 (263)
T PRK13113 231 VVGSAIVKLIGEGRPVAEVLAFVATLADGAH 261 (263)
T ss_pred EECHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9868999999828998999999999999874
No 199
>PRK13123 consensus
Probab=96.49 E-value=0.053 Score=30.14 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=96.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-..++.+...+.....+.+++.+ ++.|.+. ...+....+..+...+. ++...++.+.++..
T Consensus 96 tY~N~i~~yG~e~F~~~~~~~GvdGvIi-pDLP~eE------------~~~~~~~~~~~gi~~I~-liaPtt~~~Ri~~i 161 (256)
T PRK13123 96 TYINPVFQYGIERFVEDLAETGVKGLII-PDLPYEH------------QDFIAPLLRDTDIALIP-LVSLTSPIERQKEI 161 (256)
T ss_pred EHHHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEE-ECCCCCCHHHHHHH
T ss_conf 0425898718999999999749978973-7999678------------99999999976997786-40899938899999
Q ss_pred HHCCCCEEE-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 976997999-4588886510012310234432324431063468899999852289879972988888999999983888
Q gi|254781020|r 204 LKSGIRYFD-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGAS 282 (337)
Q Consensus 204 ~~aGad~i~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAd 282 (337)
.+..-.+|. ||-.| .|+..... .-.....+..+++.. ++||..-=||++..|+-+.. -.||
T Consensus 162 ~~~a~GFiY~Vs~~G-vTG~~~~~---------------~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~~-~~aD 223 (256)
T PRK13123 162 IKEAEGFIYAVAVNG-VTGKRGNY---------------RDDLDSHLEKLKSIA-HIPVLAGFGISTLEDVERFN-AVCD 223 (256)
T ss_pred HHCCCCCEEEEECCC-CCCCCCCC---------------HHHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHH-HHCC
T ss_conf 860788489974455-66765333---------------388999999998568-99879976889999999997-1399
Q ss_pred EEHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Q ss_conf 52334799998414-66899999999999999
Q gi|254781020|r 283 LGGLASPFLKPAMD-SSDAVVAAIESLRKEFI 313 (337)
Q Consensus 283 aV~iGr~~l~~~~~-G~~gv~~~l~~l~~el~ 313 (337)
.|-+|++++..... +.+.+.+++..++++.+
T Consensus 224 GvIVGSaiv~~i~~~~~~ei~~fi~~~k~~~~ 255 (256)
T PRK13123 224 GVIVGSKIVELLHEGKEEEICEFIQAAKQKEK 255 (256)
T ss_pred EEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 99972999999997798999999999998741
No 200
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.47 E-value=0.015 Score=33.42 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=30.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.+.++.+.+.++.|+++ .|.+.+.++.+.+.++|+++++++.
T Consensus 181 ~~~~~~i~~~~~~pvia--sGGv~s~~di~~l~~~g~~gvivG~ 222 (240)
T PRK13585 181 PEPVRELVDSVDIPVIA--SGGVTSLDDVKALKEAGAAGVVVGS 222 (240)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHCCCCEEEEEH
T ss_conf 89999999868999999--8899999999999978997899876
No 201
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.46 E-value=0.017 Score=33.11 Aligned_cols=42 Identities=19% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC---CCCEEEECC
Q ss_conf 99999999873997178504786688999999976---997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKS---GIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~a---Gad~i~v~~ 215 (337)
.+.++.+.+.++.|++. .|.+.+.++.+.+.+. |+++++++-
T Consensus 178 ~~l~~~i~~~~~ipvia--sGGv~s~~Di~~L~~~~~~gv~gviiG~ 222 (241)
T PRK00748 178 VELTRELAAATPIPVIA--SGGVSSLDDIRALKALGPEGVEGVIVGK 222 (241)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHCCCCCCCEEEEEH
T ss_conf 99999999868998999--8899999999999860317924899878
No 202
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.41 E-value=0.059 Score=29.88 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCEEEECCCCH----HHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCE
Q ss_conf 9999877650898576253203----566520688524307999999998739971785047866889999999769979
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPL----QEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRY 210 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~ 210 (337)
+..+... ..++|++-+.+... .......+.+.++.+.+-. ..+..+..|+|.- |.+.++.++.+|..+|||+
T Consensus 147 e~a~~L~-~~GaD~vkVGiG~GS~CtTr~~tGvG~Pq~sai~~~a-~~~~~~~v~iiaD--GGi~~~Gdi~KAla~GAd~ 222 (325)
T cd00381 147 EAARDLI-DAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVA-AAARDYGVPVIAD--GGIRTSGDIVKALAAGADA 222 (325)
T ss_pred HHHHHHH-HCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHCCCCCEEEC--CCCCCHHHHHHHHHCCCCE
T ss_conf 9999998-6699899975757777666010178874588999999-9763449858944--8733107888887528878
Q ss_pred EEECCCCC
Q ss_conf 99458888
Q gi|254781020|r 211 FDIAGRGG 218 (337)
Q Consensus 211 i~v~~~gG 218 (337)
+-+++.-.
T Consensus 223 VMlG~~lA 230 (325)
T cd00381 223 VMLGSLLA 230 (325)
T ss_pred EEECCHHC
T ss_conf 98462104
No 203
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.38 E-value=0.026 Score=31.98 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++...+.++|+++++++.
T Consensus 185 ~~l~~~i~~~~~~pvIa--sGGv~s~~dl~~l~~~g~~gvi~G~ 226 (252)
T PRK13597 185 LRLTRMVAEAVGVPVIA--SGGAGRMEHFLEAFQAGAEAALAAS 226 (252)
T ss_pred HHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf 59999998507998999--7898999999999878996998712
No 204
>PRK04281 consensus
Probab=96.38 E-value=0.021 Score=32.54 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=27.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-CCCCEEEECC
Q ss_conf 9999999987399717850478668899999997-6997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLK-SGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~-aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++...+.+ ..++++.+++
T Consensus 187 ~~l~~~i~~~~~iPvIa--sGGv~~~~di~~~~~~~~~~~v~~g~ 229 (254)
T PRK04281 187 LPLTRAVAEAVDIPVIA--SGGVGNVRHLIEGITEGKADAVLAAG 229 (254)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 69999998616998999--78989999999999808988897643
No 205
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.38 E-value=0.063 Score=29.73 Aligned_cols=129 Identities=16% Similarity=0.187 Sum_probs=76.1
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE------CCCCCCHHH----HHHHHHCCCCEEE
Q ss_conf 508985762532035665206885243079999999987399717850------478668899----9999976997999
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE------VGCGLSSMD----IELGLKSGIRYFD 212 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~------v~~~~~~~~----~~~a~~aGad~i~ 212 (337)
..+++++.++++.....- ....+. .-.+..-...|+.|+++-. +.+..+++. ++.+.|.|||.|.
T Consensus 87 rlGAdaV~~~v~~Gs~~E----~~~l~~-l~~v~~ea~~~G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVK 161 (235)
T cd00958 87 RLGADAVGVTVYVGSEEE----REMLEE-LARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred HCCCCEEEEEEECCCCHH----HHHHHH-HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 355567999986898168----999999-999999999839978999741687655656689999999999997899898
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC--CHHH----HHHHHHHCCCEEHH
Q ss_conf 45888865100123102344323244310634688999998522898799729888--8899----99999838885233
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR--NGVD----ILKSIILGASLGGL 286 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr--~g~D----v~kAlalGAdaV~i 286 (337)
+--.|- .+....+.+.. .+||+..||=+ +-.| +..+|-.||..|-+
T Consensus 162 v~y~g~---------------------------~e~f~~vv~~~-~vPVviaGG~k~~~~~~~L~~v~~a~~aGa~Gv~~ 213 (235)
T cd00958 162 TKYTGD---------------------------AESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV 213 (235)
T ss_pred ECCCCC---------------------------HHHHHHHHHHC-CCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 239999---------------------------89999999708-99899808999999999999999999769956763
Q ss_pred HHHHHHHHCCCHHHHHHHHH
Q ss_conf 47999984146689999999
Q gi|254781020|r 287 ASPFLKPAMDSSDAVVAAIE 306 (337)
Q Consensus 287 Gr~~l~~~~~G~~gv~~~l~ 306 (337)
||-.|+. .-+..+.+.+.
T Consensus 214 GRNvfQ~--~~p~~~~~al~ 231 (235)
T cd00958 214 GRNIFQR--PDPVAMLRAIS 231 (235)
T ss_pred CCHHHCC--CCHHHHHHHHH
T ss_conf 6412258--88999999999
No 206
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=96.37 E-value=0.021 Score=32.56 Aligned_cols=228 Identities=20% Similarity=0.183 Sum_probs=137.9
Q ss_pred HHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCH
Q ss_conf 5688630324557899810174629989-896256868501266334300025699999999809906605202211286
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDH 102 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~ 102 (337)
..|||++|+|.. ..+.++|||+||+|- ..+|++||+.|||+..+. -.||.+.+..|..-++.-. +..++
T Consensus 2 lTFDDVLl~P~~-~~v~p~dvdlstr~t~~i~L~iP~~SspMDTVTE-------~~MAiAMA~~GGiGVIH~N--~~~E~ 71 (476)
T TIGR01302 2 LTFDDVLLLPGF-IDVEPDDVDLSTRITKNIKLNIPILSSPMDTVTE-------SRMAIAMAREGGIGVIHRN--MSIER 71 (476)
T ss_pred CCCCEEEECCCC-CEECCCCEEEEEEECCCEEEEEEEEECCCCHHHH-------HHHHHHHHHCCCCEEEECC--CCHHH
T ss_conf 740215767853-1232542478743214306754068589882459-------9999999854994799447--99899
Q ss_pred HHHHHHHHHHHCCCHHHHHC-CCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC--CH-----H--HHHHH--CCCCCH--
Q ss_conf 68889999986640123220-27521236799899998776508985762532--03-----5--66520--688524--
Q gi|254781020|r 103 NAIKSFELRQYAPHTVLISN-LGAVQLNYDFGVQKAHQAVHVLGADGLFLHLN--PL-----Q--EIIQP--NGNTNF-- 168 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~--~~~~~--~~~~~~-- 168 (337)
.... +++.+.....+.. --.....++.++..+.+..+..+..++.+.-+ .. . +.... |.|-.|
T Consensus 72 Qae~---V~~VKr~e~g~i~redp~t~~P~~tv~~~~~l~~~~gisG~PVv~~G~~~g~ktGKLvGIiT~sqWrD~~f~~ 148 (476)
T TIGR01302 72 QAEE---VKRVKRAENGIISREDPVTISPETTVEDVLELMERKGISGIPVVEDGKDGGPKTGKLVGIITKSQWRDVRFVK 148 (476)
T ss_pred HHHH---HHHHHHHCCCEEEECCCEEECCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCEEECCCCC
T ss_conf 9999---8875232066065148868479851899997322157654578836889897100699998377225411010
Q ss_pred ---------------------------HHH--------------------------HHHHHH---HHHHCCC------CE
Q ss_conf ---------------------------307--------------------------999999---9987399------71
Q gi|254781020|r 169 ---------------------------ADL--------------------------SSKIAL---LSSAMDV------PL 186 (337)
Q Consensus 169 ---------------------------~~~--------------------------~~~i~~---l~~~~~~------pi 186 (337)
+.. .+++.. ....++. .+
T Consensus 149 ~~~~~daV~~~MT~~~~~iT~~e~i~~e~A~~~L~~~r~ekLpvVd~~~~lVgLiT~~Di~~~~~~P~A~kd~vG~~GrL 228 (476)
T TIGR01302 149 DKGKKDAVSEVMTPREELITVPEGIDLEEALKVLHKHRIEKLPVVDKDGELVGLITVKDIVKRREFPHASKDTVGENGRL 228 (476)
T ss_pred CCCCCCCEEECCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 46883301011203764348416777899999988608650478827898899986447889863888778874888608
Q ss_pred EE-EECCC-CCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEC
Q ss_conf 78-50478-66889999999769979994588886510012310234432324431063468899999852289879972
Q gi|254781020|r 187 LL-KEVGC-GLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIAS 264 (337)
Q Consensus 187 i~-k~v~~-~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~Iiad 264 (337)
++ --++. -.+.+-+..+.++|+|.|+|+...|.+ +.++..+..+++-..+++||+
T Consensus 229 ~VgAAvg~r~~D~~R~~~L~~AGvDv~viDsshGhs----------------------~~vl~~ik~~k~~Yp~~~iia- 285 (476)
T TIGR01302 229 IVGAAVGTREDDLERAEALVEAGVDVIVIDSSHGHS----------------------IYVLDSIKKIKKTYPDLDIIA- 285 (476)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCC----------------------HHHHHHHHHHHHHCCEEEEEE-
T ss_conf 999884689861899999996596589981665453----------------------789999999986388057994-
Q ss_pred CCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 98888899999998388852334
Q gi|254781020|r 265 GGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 265 GGIr~g~Dv~kAlalGAdaV~iG 287 (337)
|-|-|..-+-..+.+|||+|=||
T Consensus 286 GNVaT~~~a~~LI~AgADg~rVG 308 (476)
T TIGR01302 286 GNVATAEQAKALIDAGADGLRVG 308 (476)
T ss_pred CCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 34411788988985288878983
No 207
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.35 E-value=0.012 Score=34.00 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=27.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999-976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELG-LKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a-~~aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++...+ ...|++++.++.
T Consensus 182 ~~l~~~i~~~~~~piI~--sGGi~~~~di~~~l~~~~~~gv~~g~ 224 (243)
T cd04731 182 LELIRAVSSAVNIPVIA--SGGAGKPEHFVEAFEEGGADAALAAS 224 (243)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCEEEEEHH
T ss_conf 99999999868999999--88999999999999878982998822
No 208
>PRK03220 consensus
Probab=96.35 E-value=0.034 Score=31.27 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=36.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++.+.+.+.|+|++.++.
T Consensus 192 ~~l~~~i~~~~~~piIa--sGGv~s~~di~~l~~~g~~gv~~g~ 233 (257)
T PRK03220 192 LEMLRAVRAAVTVPVIA--SGGAGAVEHFAPAVAAGADAVLAAS 233 (257)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHCCCCEEEEHH
T ss_conf 69999999748999899--8789999999999978997998746
No 209
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=96.33 E-value=0.025 Score=32.09 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=61.3
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 998776508985762532035665206885243079999999987399717850----4786688999999976997999
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE----VGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~----v~~~~~~~~~~~a~~aGad~i~ 212 (337)
..+..+..+++++.+..+.-. ...-+++.++.+.+.+.++.|+++-- .+...+++...++.+. +.|+
T Consensus 88 ~a~~A~~~Gadav~v~~P~y~-------~~s~~~l~~~f~~ia~~~~~Pi~lYn~P~~tg~~l~~~~l~~L~~~--~nv~ 158 (292)
T PRK03170 88 LTKFAEKAGADGALVVTPYYN-------KPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLAEH--PNIV 158 (292)
T ss_pred HHHHHHHCCCCEEEECCCCCC-------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC--CCEE
T ss_conf 999898759998996177688-------9999999999999986359976987378632767699999998178--9989
Q ss_pred EC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 45-888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 213 IA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 213 v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
-. ...+ .+.....+. +...+++.|+ .| ...-.+.++++||+.+..+.+
T Consensus 159 giKdss~-----------------------d~~~~~~~~--~~~~~~~~v~-~G---~d~~~~~~l~~Ga~G~is~~~ 207 (292)
T PRK03170 159 GIKEATG-----------------------DLERVSELR--ELCPDDFAVY-SG---DDALALPFLALGGVGVISVTA 207 (292)
T ss_pred EEEECCC-----------------------CHHHHHHHH--HHCCCCCEEE-CC---CHHHHHHHHHHCCCEEEEEHH
T ss_conf 9996999-----------------------999999999--8669873674-58---489999999943986998447
No 210
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.33 E-value=0.067 Score=29.57 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+.++...+ ...++|.+.-+++--.........++ ++.++++++..+.|++.- |.+.+|+.++++.++||++++
T Consensus 132 t~ee~~~A-~~~G~D~vgTTL~GYT~~t~~~~~PD----~~lv~~l~~~~~~pvIaE--Gri~tPe~a~~a~~~GA~aVV 204 (219)
T cd04729 132 TLEEALNA-AKLGFDIIGTTLSGYTEETAKTEDPD----FELLKELRKALGIPVIAE--GRINSPEQAAKALELGADAVV 204 (219)
T ss_pred CHHHHHHH-HHCCCCEEECCCCCCCCCCCCCCCCC----HHHHHHHHHHCCCCEEEE--CCCCCHHHHHHHHHCCCCEEE
T ss_conf 89999999-98499899702145677878899987----899999999759939970--698999999999983998999
Q ss_pred ECC
Q ss_conf 458
Q gi|254781020|r 213 IAG 215 (337)
Q Consensus 213 v~~ 215 (337)
|++
T Consensus 205 VGs 207 (219)
T cd04729 205 VGS 207 (219)
T ss_pred ECC
T ss_conf 895
No 211
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=96.31 E-value=0.0047 Score=36.35 Aligned_cols=54 Identities=24% Similarity=0.123 Sum_probs=44.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 2898799729888889999999838-88523347999984146689999999999999999998089
Q gi|254781020|r 256 CNEAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~ 321 (337)
.-+|||||+||.=+..|+.+|+.-| |||+...+-|.| =+.=..|+|.++..-|.
T Consensus 255 ~v~iPVIASGGAG~~eHf~EAF~~gkADAaLaAS~FH~------------~e~~I~evK~YL~~~Gi 309 (312)
T TIGR00735 255 AVKIPVIASGGAGKPEHFYEAFTKGKADAALAASIFHY------------REITIGEVKEYLAERGI 309 (312)
T ss_pred HCCCCEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHHC------------CCCCHHHHHHHHHHCCC
T ss_conf 16656575078798530032221000345344355510------------45548999999996478
No 212
>PRK13121 consensus
Probab=96.30 E-value=0.069 Score=29.49 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 23679989999877650898576253203566520688524307999999998739971785047866889999999769
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG 207 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG 207 (337)
.-..++.+...+.....+.+++.+ ++.|.+. .+.+....+..+...+.- +.-.++.+..+...+..
T Consensus 105 ~i~~yG~e~F~~~~~~aGvdGlIi-pDLP~eE------------~~~~~~~~~~~gl~~I~l-vaPtt~~~Ri~~i~~~~ 170 (265)
T PRK13121 105 PIERMGYDAFAAAARAAGVDGVLV-VDYPPEE------------CEEFAAKMRAAGIDPIFL-LAPTSTDERIAAVARVA 170 (265)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHHHHC
T ss_conf 999971999999998729873434-8999899------------999999998659966899-58999899999999628
Q ss_pred CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 979994588886510012310234432324431063468-8999998522898799729888889999999838885233
Q gi|254781020|r 208 IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 208 ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
-.+|..-..-|.|+.. ... .+.+ ..+..+++. .++||..-=||++..|+ +.+.-+||.|-+
T Consensus 171 ~gFiY~Vs~~GvTG~~-----~~~-----------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~~-~~v~~~ADGvIV 232 (265)
T PRK13121 171 SGYVYYVSLKGVTGAA-----TLD-----------VSSVAAKLPAIRSH-VPLPVGVGFGIRDAATA-RAVAEVADAVVI 232 (265)
T ss_pred CCEEEEEECCCCCCCC-----CCC-----------HHHHHHHHHHHHHC-CCCCEEEECCCCCHHHH-HHHHHCCCEEEE
T ss_conf 9809997555566777-----566-----------28899999999854-79985997688989999-999811999998
Q ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
Q ss_conf 47999984146-6899999999999999999
Q gi|254781020|r 287 ASPFLKPAMDS-SDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 287 Gr~~l~~~~~G-~~gv~~~l~~l~~el~~~m 316 (337)
|++++..+..+ .+...+.+..+..+||..+
T Consensus 233 GSaiV~~i~~~~~e~~~~~v~~fi~~lk~al 263 (265)
T PRK13121 233 GSRLVQLIEQAPPERAAAALTDFLAELRAAL 263 (265)
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 4899999985785768999999999999986
No 213
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.29 E-value=0.07 Score=29.45 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=86.7
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 12367998999987765089857625320356652068852430799999999873997178504786688999999976
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKS 206 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~a 206 (337)
+.-...+.+...+.....+.+++.+. +.|.+. .+.+....+..+...+.- +.-.++.+.++...+.
T Consensus 95 N~i~~~G~e~F~~~~~~~GvdGvIip-DLP~eE------------~~~~~~~~~~~gi~~I~l-vaPtt~~~Ri~~i~~~ 160 (256)
T PRK13111 95 NPIFQYGVEAFAADAAEAGVDGLIIP-DLPPEE------------AEEFRAAAKKHGIDLIFL-VAPTTTDERLKKIASH 160 (256)
T ss_pred CHHHHHCHHHHHHHHHHCCCCEEEEC-CCCHHH------------HHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHH
T ss_conf 08987099999999997599779816-999788------------899999999759808999-6999988999999962
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 99799945888865100123102344323244310634688999998522898799729888889999999838885233
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
.-.+|..-..-|.|+.... . .......+..+++. .++||..-=||++..|+-+ +.-|||.|-+
T Consensus 161 s~gfiY~vs~~GvTG~~~~-----~----------~~~~~~~i~~ik~~-t~~Pi~vGFGIs~~e~v~~-~~~~aDGvIV 223 (256)
T PRK13111 161 ASGFVYYVSRAGVTGARSA-----D----------AADVADLLARLKAH-TDLPVAVGFGISTPEQAAA-IAEGADGVIV 223 (256)
T ss_pred CCCEEEEEECCCCCCCCCC-----C----------HHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHH-HHCCCCEEEE
T ss_conf 6985999856776788766-----6----------28899999999870-6897588528899999999-9745999998
Q ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 47999984146-689999999999999999
Q gi|254781020|r 287 ASPFLKPAMDS-SDAVVAAIESLRKEFIVS 315 (337)
Q Consensus 287 Gr~~l~~~~~G-~~gv~~~l~~l~~el~~~ 315 (337)
|++++..+..+ .+...+.+..+..+|+..
T Consensus 224 GSaiv~~i~~~~~~~~~~~v~~f~~~lk~~ 253 (256)
T PRK13111 224 GSALVKIIEAADPEEALAALAEFVKELKAA 253 (256)
T ss_pred CHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 689999998439777899999999999998
No 214
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.27 E-value=0.024 Score=32.22 Aligned_cols=42 Identities=26% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.+.++.+++..+.|++. .|.+.+.++.+.+.+.|+++++++.
T Consensus 178 ~~l~~~i~~~~~~pvi~--sGGv~s~~di~~l~~~g~~gvivg~ 219 (233)
T cd04723 178 LELLERLAARADIPVIA--AGGVRSVEDLELLKKLGASGALVAS 219 (233)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHCCCCEEEEEH
T ss_conf 99999999868998999--8899999999999978998999863
No 215
>pfam01729 QRPTase_C Quinolinate phosphoribosyl transferase, C-terminal domain. Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase EC:2.4.2.19 is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide. The QA substrate is bound between the C-terminal domain of one subunit, and the N-terminal domain of the other. The C-terminal domain has a 7 beta-stranded TIM barrel-like fold.
Probab=96.24 E-value=0.074 Score=29.29 Aligned_cols=93 Identities=12% Similarity=0.097 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-
Q ss_conf 3079999999987399-71785047866889999999769979994588886510012310234432324431063468-
Q gi|254781020|r 169 ADLSSKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP- 246 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~- 246 (337)
.++.+.++.++...+. +.+...+ .+.+.++.++++|+|.|.++|..- .++
T Consensus 64 g~~~~~i~~~~~~~~~~~~I~VEv---~tl~e~~~a~~~~~d~I~LDn~sp-------------------------e~l~ 115 (169)
T pfam01729 64 GSITEAVRRAREVAPFAVKIEVEV---ENLEELEEALEAGADIIMLDNFSP-------------------------EEVR 115 (169)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEE---EHHHHHHHHHHCCCCEEEECCCCH-------------------------HHHH
T ss_conf 799999999999679997099996---019989999846998999779999-------------------------9999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 89999985228987997298888899999998388852334799
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
.++..+++...++.+-++|||. ...+.+.-..|.|++.+|...
T Consensus 116 ~~v~~l~~~~~~v~iEaSGgI~-~~ni~~yA~tGvD~IS~galt 158 (169)
T pfam01729 116 EAVEELDERAGRVLLEVSGGIT-LDNVLEYAKTGVDVISVGALT 158 (169)
T ss_pred HHHHHHHHHCCCEEEEECCCCC-HHHHHHHHHCCCCEEECCHHH
T ss_conf 9999999758967999618999-999999997699999858644
No 216
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.23 E-value=0.025 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHCCCCEEEECCC
Q ss_conf 99999999873997178504786688999999-9769979994588
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELG-LKSGIRYFDIAGR 216 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a-~~aGad~i~v~~~ 216 (337)
.+.++.+++.++.|++. .|.+.+.++...+ .+.+++++.+++.
T Consensus 186 ~~l~~~i~~~~~iPiI~--sGGv~s~~di~~~l~~~~i~gv~~G~~ 229 (253)
T PRK02083 186 LELTRAVRDAVSVPVIA--SGGAGNLEHFAEAFTEGGADAALAASV 229 (253)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCEEEEEHHH
T ss_conf 99999999757999999--889999999999998679809987127
No 217
>PRK13131 consensus
Probab=96.20 E-value=0.078 Score=29.17 Aligned_cols=144 Identities=12% Similarity=0.101 Sum_probs=85.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-..++.+.........+.+++.+. +.|.+. .+.+....+..+...+. ++.-.++.+..+..
T Consensus 94 ~Y~N~i~~yG~e~F~~~~~~~GvdGvIip-DLP~eE------------~~~~~~~~~~~~l~~I~-lvaPtt~~~Ri~~i 159 (257)
T PRK13131 94 AYANLIFSYGVDGFYAQAKECGVDSVLIA-DMPLIE------------KELVIKSAQKHQIKQIF-IASPNASVKDLEQV 159 (257)
T ss_pred CCHHHHHHHCHHHHHHHHHHCCCCCEECC-CCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHH
T ss_conf 27689998579999999986599856558-999678------------89999999977984799-72899988999999
Q ss_pred HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 97699799945888865100123102344323244310634688999998522898799729888889999999838885
Q gi|254781020|r 204 LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 204 ~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
.+..-.+|..-.+-|.|+..... . -.....+..+++. .++||..-=||++..|+.++..+|||.
T Consensus 160 ~~~s~GFiY~vs~~GvTG~~~~~-----~----------~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~gaDG 223 (257)
T PRK13131 160 ATHSQGYIYTLARSGVTGASHTL-----E----------NDASAIIKTLKTF-SPTPALLGFGISKKEHITNAKGMGADG 223 (257)
T ss_pred HHCCCCEEEEEECCCCCCCCCCC-----C----------HHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHCCCCE
T ss_conf 83589749998457677986434-----0----------7699999999966-899879980579889999998559999
Q ss_pred EHHHHHHHHHHCCC
Q ss_conf 23347999984146
Q gi|254781020|r 284 GGLASPFLKPAMDS 297 (337)
Q Consensus 284 V~iGr~~l~~~~~G 297 (337)
|-+|++++..+.++
T Consensus 224 vIVGSaiV~~I~~~ 237 (257)
T PRK13131 224 VICGSALVKIIEEN 237 (257)
T ss_pred EEECHHHHHHHHHC
T ss_conf 99878999999872
No 218
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.20 E-value=0.054 Score=30.10 Aligned_cols=62 Identities=13% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCC----CCCHHHHHHHHH
Q ss_conf 9987765089857625320356652068852430799999999873-99717850478----668899999997
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKEVGC----GLSSMDIELGLK 205 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~v~~----~~~~~~~~~a~~ 205 (337)
..+..+..++|++.+..+.- .....+++..+.+.+.+.. +.|+++--++. ..+++....+.+
T Consensus 95 ~a~~a~~~Gad~~lv~~P~y-------~~~~~~~l~~~~~~ia~a~~~lPiilYn~P~~tg~~l~~~~~~~La~ 161 (309)
T cd00952 95 RTRALLDLGADGTMLGRPMW-------LPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred HHHHHHHCCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf 99999846989999888858-------89999999999999998678998899968640015789999999955
No 219
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=96.15 E-value=0.083 Score=29.02 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=80.8
Q ss_pred HHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCE
Q ss_conf 99999866401232202752123679989999877650898576253203566520688524307999999998739971
Q gi|254781020|r 107 SFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPL 186 (337)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pi 186 (337)
...+++..++..++.-+.. .+.+.... +..-..++|.+-+|...+... .+........++..+
T Consensus 43 v~~lk~~~p~~~I~~DlK~----~D~g~~~~-~~~~~~Gad~itVh~~~~~~t------------i~~a~~~a~~~~~~v 105 (206)
T TIGR03128 43 VKEMKEAFPDRKVLADLKT----MDAGEYEA-EQAFAAGADIVTVLGVADDAT------------IKGAVKAAKKHGKEV 105 (206)
T ss_pred HHHHHHHCCCCEEEEEEEE----CCCHHHHH-HHHHHCCCCEEEEECCCCHHH------------HHHHHHHHHHCCCEE
T ss_conf 9999987899979999504----47438999-999972898999943489799------------999999999739979
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECC-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 78504786688999999976997999458-88865100123102344323244310634688999998522898799729
Q gi|254781020|r 187 LLKEVGCGLSSMDIELGLKSGIRYFDIAG-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASG 265 (337)
Q Consensus 187 i~k~v~~~~~~~~~~~a~~aGad~i~v~~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadG 265 (337)
.+.+.+.......++.+.+.|+|.+.+.. ... +.. +-.....+...........+..+|
T Consensus 106 ~vdl~~~~~~~~~a~~~~~~g~d~v~~h~g~d~----------~~~----------~~~~~~~~~~~~~~~~~~~i~v~g 165 (206)
T TIGR03128 106 QVDLINVKDKVKRAKELKELGADYIGVHTGLDE----------QAK----------GQNPFEDLQTILKLVKEARVAVAG 165 (206)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCEEEEECCCCH----------HHC----------CCCCHHHHHHHHHCCCCCCEEECC
T ss_conf 999747898899999999758988995025004----------432----------679889999998625787363679
Q ss_pred CCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8888899999998388852334799998
Q gi|254781020|r 266 GLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 266 GIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
|++-. ..-+++..|||.+-+|||...+
T Consensus 166 Gi~~~-t~~~ai~~Gad~vVVGR~It~A 192 (206)
T TIGR03128 166 GINLD-TIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred CCCCC-CHHHHHHCCCCEEEECCCCCCC
T ss_conf 86835-6999986699999989612479
No 220
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.15 E-value=0.0074 Score=35.20 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 899999852289879972988888999999983888523347999
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+.+..+++.-.++|+|.-||||+...+.++...|||.|-+|+.+-
T Consensus 174 e~V~~v~~~l~~~~LivGGGIrs~e~a~~~~~aGAD~IVvGn~ie 218 (229)
T PRK04169 174 EMVKAVKKALTDTPLIVGGGIRSPEQAREMAKAGADTIVVGTIIE 218 (229)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEE
T ss_conf 999999973789878992896999999999976999999886201
No 221
>PRK07695 transcriptional regulator TenI; Provisional
Probab=96.15 E-value=0.083 Score=29.02 Aligned_cols=115 Identities=13% Similarity=0.061 Sum_probs=70.6
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
+..+|..++..++. + +..+.+.+..+.+.|+|.+.++----+.. .+.. ...|+ +.+....+
T Consensus 86 ~~~~R~~~~~~~IG--~-S~h~~~e~~~a~~~gaDYi~~Gpif~T~t-----------K~~~--~~~G~---~~l~~~~~ 146 (202)
T PRK07695 86 VKSVREKFPYLHVG--Y-SVHSLEEAIQAEKNGADYVVYGHVFPTDC-----------KKGV--PARGL---EELSEIAR 146 (202)
T ss_pred HHHHHHHCCCCEEE--E-ECCCHHHHHHHHHCCCCEEEECCCCCCCC-----------CCCC--CCCCH---HHHHHHHH
T ss_conf 99999877998999--9-57999999999776999699725412688-----------8898--87899---99999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2289879972988888999999983888523347999984146689999999999999999
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVS 315 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~ 315 (337)
.-++||++-|||. ..++-+.+..||+.+.+-+.++.+. -+ ......|++.++.+
T Consensus 147 -~~~iPvvAIGGI~-~~ni~~v~~~Ga~giAvis~I~~a~--dp---~~~~~~l~~~i~~~ 200 (202)
T PRK07695 147 -ALSIPVIAIGGIT-PENTRDVLAAGVSGIAVMSGIFSSS--NP---YSKAKRYKESIRKW 200 (202)
T ss_pred -HCCCCEEEECCCC-HHHHHHHHHCCCCEEEEHHHHHCCC--CH---HHHHHHHHHHHHHH
T ss_conf -6799989986989-9999999982999999718977699--99---99999999999986
No 222
>KOG2333 consensus
Probab=96.12 E-value=0.086 Score=28.93 Aligned_cols=202 Identities=15% Similarity=0.105 Sum_probs=110.2
Q ss_pred EEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHH--CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHH
Q ss_conf 68501266334300025699999999809906605202211--2866888999998664012322027521236799899
Q gi|254781020|r 59 LLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMF--SDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQK 136 (337)
Q Consensus 59 v~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (337)
.++||.+ ..++...-+.|.++|--...|++..+. ..-...+|.-++...... ++..|+.....+ .
T Consensus 267 ~~LaPLT-------TvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEd-----iFGVQlag~~pd-t 333 (614)
T KOG2333 267 KYLAPLT-------TVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSED-----IFGVQLAGSKPD-T 333 (614)
T ss_pred EEECCCC-------CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC-----CEEEEECCCCHH-H
T ss_conf 5432412-------35785089999985886415678887787536531245664057665-----323674268868-8
Q ss_pred HHH----HHHHHCCCEEEECCCCHHHHHHHCCCCC--HH---HHHHHHHHHHHHCCC-CEEEEE-CCCCC----CHHHHH
Q ss_conf 998----7765089857625320356652068852--43---079999999987399-717850-47866----889999
Q gi|254781020|r 137 AHQ----AVHVLGADGLFLHLNPLQEIIQPNGNTN--FA---DLSSKIALLSSAMDV-PLLLKE-VGCGL----SSMDIE 201 (337)
Q Consensus 137 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~i~~l~~~~~~-pii~k~-v~~~~----~~~~~~ 201 (337)
..+ ..+....|.+.++..||-+.+...|-.. .. .+...++.-....+. |+-||. .|+-. ..+-+.
T Consensus 334 ~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~ 413 (614)
T KOG2333 334 AAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIP 413 (614)
T ss_pred HHHHHHHHHHHCCEEEEECCCCCCHHEEECCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 99999999861660046326899711022067750542381899999999987605787489984044367613889999
Q ss_pred HHH-HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 999-769979994588886510012310234432324431063468899999852-289879972988888999999983
Q gi|254781020|r 202 LGL-KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY-CNEAQFIASGGLRNGVDILKSIIL 279 (337)
Q Consensus 202 ~a~-~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~-~~~v~IiadGGIr~g~Dv~kAlal 279 (337)
... ++|+++|.+-|+--.. |-... .+| .-+.+|++. ..-+|+|+.|-|-+..|=.+-+..
T Consensus 414 ~i~newg~savTlHGRSRqQ-------RYTK~------AnW-----dYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~ 475 (614)
T KOG2333 414 RIVNEWGASAVTLHGRSRQQ-------RYTKS------ANW-----DYIEECADKAKSALPLIGNGDILSWEDWYERLNQ 475 (614)
T ss_pred HHHHCCCCCEEEECCCHHHH-------HHHCC------CCH-----HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHC
T ss_conf 98642475337752720655-------31023------682-----7899999744567526765750648999887535
Q ss_pred C--CCEEHHHHHHH
Q ss_conf 8--88523347999
Q gi|254781020|r 280 G--ASLGGLASPFL 291 (337)
Q Consensus 280 G--AdaV~iGr~~l 291 (337)
+ -+.|||+|..|
T Consensus 476 ~p~v~svMIaRGAL 489 (614)
T KOG2333 476 NPNVDSVMIARGAL 489 (614)
T ss_pred CCCCCEEEEECCCC
T ss_conf 99754478614530
No 223
>PRK05211 consensus
Probab=96.11 E-value=0.036 Score=31.18 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=22.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999-976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELG-LKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a-~~aGad~i~v~~ 215 (337)
.+.++.+.+.++.|++. .|.+.+.++...+ .+.|++++.++.
T Consensus 181 l~l~~~i~~~~~iPvIa--sGGv~s~~di~~~~~~~~~~gvi~gs 223 (248)
T PRK05211 181 LAQLKKVRAICHVPLIA--SGGAGTMEHFLEAFRDADVDGALAAS 223 (248)
T ss_pred HHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999746999999--88889999999999867984133048
No 224
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.10 E-value=0.033 Score=31.38 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=11.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 8799729888889999999838885233479
Q gi|254781020|r 259 AQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 259 v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
+||...||||+-.|+-+.+.+||+-|-+||.
T Consensus 75 ipi~vGGGIrs~e~~~~ll~~GadkViigs~ 105 (232)
T TIGR03572 75 MPLTVGGGIRSLEDAKKLLSLGADKVSINTA 105 (232)
T ss_pred CCEEEEECEEEHHHHHHHHHCCCCEEEECHH
T ss_conf 8589971330389999999769968993454
No 225
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.09 E-value=0.035 Score=31.24 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHCCCEEEEC-CCCHHHHHHHCCCCCHHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH-HHCCCC
Q ss_conf 98999987765089857625-320356652068852430-799999999873997178504786688999999-976997
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLH-LNPLQEIIQPNGNTNFAD-LSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG-LKSGIR 209 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a-~~aGad 209 (337)
++.+..+..+..++..+.++ ++. +....+ -.+.++.+++.++.|++. .|.+.+.++.+.+ .+.|++
T Consensus 153 ~~~~~~~~~~~~g~geil~TdI~r---------DGt~~G~d~~l~~~i~~~~~ipiIa--sGGi~s~~di~~l~~~~~v~ 221 (253)
T PRK01033 153 DPVEFAKQAEELGAGEIVLNSIDR---------DGVMKGYDLELIKKISSAVKIPVTA--LGGAGSLDDIADLIQEAGAS 221 (253)
T ss_pred CHHHHHHHHHHCCCCEEEEEEECC---------CCCCCCCCHHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHCCCE
T ss_conf 589999998746977999987848---------8976687999999999878999999--78989999999999867973
Q ss_pred EEEECC
Q ss_conf 999458
Q gi|254781020|r 210 YFDIAG 215 (337)
Q Consensus 210 ~i~v~~ 215 (337)
++.+++
T Consensus 222 gv~~gs 227 (253)
T PRK01033 222 AAAAGS 227 (253)
T ss_pred EEEEEE
T ss_conf 997831
No 226
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.07 E-value=0.088 Score=28.85 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=31.8
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 9999985228987997298888899999998388852334799998
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.+...+... ...|...||||- .+.-+|+..|||.+-+|||...+
T Consensus 149 ~~~~i~~~~-~~~i~VtpGIr~-~t~~~a~~~gad~iVVGR~It~A 192 (202)
T cd04726 149 DLKKVKKLL-GVKVAVAGGITP-DTLPEFKKAGADIVIVGRAITGA 192 (202)
T ss_pred HHHHHHHHC-CCCEEECCCCCH-HHHHHHHHCCCCEEEECCCCCCC
T ss_conf 999998623-996788999885-40999997599999989834579
No 227
>PRK00830 consensus
Probab=96.04 E-value=0.027 Score=31.86 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf 999999998739971785047866889999999-76997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL-KSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~-~aGad~i~v~~ 215 (337)
.+.++.+.+.++.|++. .|.+...++...+. ..+++++.+++
T Consensus 206 ~~l~~~i~~~~~iPvIa--sGGv~~~~di~~~~~~~~~~~v~~gs 248 (273)
T PRK00830 206 IPITKKISEEVDIPVIA--SGGVGNPEHIYEGFSDGKADAALAAS 248 (273)
T ss_pred HHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHHCCCCEEEEEH
T ss_conf 69999998637998899--88999999999999838986887700
No 228
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.04 E-value=0.094 Score=28.68 Aligned_cols=93 Identities=14% Similarity=0.081 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-
Q ss_conf 307999999998739-971785047866889999999769979994588886510012310234432324431063468-
Q gi|254781020|r 169 ADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP- 246 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~- 246 (337)
.+..+.++.+|...+ ...+...+ .+.+.+..++++|+|.|.++|..- + .+
T Consensus 165 g~~~~av~~~r~~~~~~~kIeVEv---~tl~ea~~a~~~g~D~I~LDn~~~------~-------------------~~~ 216 (269)
T cd01568 165 GGITEAVKRARAAAPFEKKIEVEV---ETLEEAEEALEAGADIIMLDNMSP------E-------------------ELK 216 (269)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH------H-------------------HHH
T ss_conf 899999999998689984399994---989999999976999999879899------9-------------------999
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 899999852289879972988888999999983888523347999
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
.++..++ ..+++.+.++|||- -..+.+.-..|.|++.+|.+..
T Consensus 217 ~~v~~~~-~~~~v~ieaSGgI~-~~ni~~ya~~GvD~Is~g~lt~ 259 (269)
T cd01568 217 EAVKLLK-GLPRVLLEASGGIT-LENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred HHHHHHC-CCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECHHHC
T ss_conf 9999847-79985999989999-9999999975999999084005
No 229
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=95.98 E-value=0.042 Score=30.74 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=64.8
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHHCCCCEE
Q ss_conf 99987765089857625320356652068852430799999999873997178504----78668899999997699799
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV----GCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v----~~~~~~~~~~~a~~aGad~i 211 (337)
+..+..+..+++++.+..+.-. ...-+.+.++.+.+.+.++.|+++--. +...+++...++.+. ..|
T Consensus 87 ~~a~~A~~~Gad~i~v~pP~y~-------~~~~~~i~~~~~~va~a~~lPi~iYn~P~~tg~~l~~~~l~~L~~~--~~i 157 (289)
T pfam00701 87 HLAQLAEAAGADGVLAVTPYYN-------KPSQEGLYQHFKAIAAATDLPVILYNVPSRTGQDLTPETIERLAEC--PNV 157 (289)
T ss_pred HHHHHHHHCCCCEEEECCCCCC-------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC--CCE
T ss_conf 9999999749997887799888-------9999999999999983159977997156540336799999998268--998
Q ss_pred E-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 9-45888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 212 D-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 212 ~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
+ +-...+ . +.....+ .+...+++.|+ .| ...-.+.++++||+....|.+
T Consensus 158 ~giK~ss~--------------~---------~~~~~~~--~~~~~~~~~v~-~G---~d~~~~~~l~~Ga~G~i~~~~ 207 (289)
T pfam00701 158 VGVKDAVG--------------D---------LERMENI--RKRAGPDFTIL-SG---DDETALSYLSLGADGVISVTS 207 (289)
T ss_pred EEEEECCC--------------C---------HHHHHHH--HHHCCCCCEEE-CC---CHHHHHHHHHCCCCEEEEEHH
T ss_conf 99996998--------------9---------9999999--99669982450-69---489999998668987998415
No 230
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.92 E-value=0.11 Score=28.38 Aligned_cols=132 Identities=17% Similarity=0.210 Sum_probs=80.1
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE------ECCC--CCCHHHH----HHHHHCCCCE
Q ss_conf 50898576253203566520688524307999999998739971785------0478--6688999----9999769979
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLK------EVGC--GLSSMDI----ELGLKSGIRY 210 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k------~v~~--~~~~~~~----~~a~~aGad~ 210 (337)
.+++++...+++..-+. +...-..+-.+..-...|+.|.+.- .+.+ ..+++.. +.+++.|||.
T Consensus 108 ~lgadAV~~~Vy~Gse~-----e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADI 182 (265)
T COG1830 108 RLGADAVGATVYVGSET-----EREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADI 182 (265)
T ss_pred HCCCCEEEEEEECCCCC-----HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 47874799999668762-----5899999999999998709964998813587765444336899999999999865776
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH-H-----HHHHHHHCCCEE
Q ss_conf 9945888865100123102344323244310634688999998522898799729888889-9-----999998388852
Q gi|254781020|r 211 FDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV-D-----ILKSIILGASLG 284 (337)
Q Consensus 211 i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~-D-----v~kAlalGAdaV 284 (337)
|-+.-.|-. +...++...+. +||+..||=+++. + +..+|-.||..+
T Consensus 183 iK~~ytg~~---------------------------e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~ 234 (265)
T COG1830 183 IKTKYTGDP---------------------------ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGV 234 (265)
T ss_pred EEECCCCCH---------------------------HHHHHHHHHCC-CCEEEECCCCCCCHHHHHHHHHHHHHCCCCCH
T ss_conf 861599984---------------------------78999997189-98798479888974999999999998357303
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 3347999984146689999999999
Q gi|254781020|r 285 GLASPFLKPAMDSSDAVVAAIESLR 309 (337)
Q Consensus 285 ~iGr~~l~~~~~G~~gv~~~l~~l~ 309 (337)
-+||-.++. .-++++.+.+.-+.
T Consensus 235 ~~GRNifQ~--~~p~am~~Ai~~Iv 257 (265)
T COG1830 235 AVGRNIFQH--EDPEAMVKAIQAIV 257 (265)
T ss_pred HHHHHHHCC--CCHHHHHHHHHHHH
T ss_conf 331033246--88699999999994
No 231
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.92 E-value=0.11 Score=28.37 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-H
Q ss_conf 07999999998739971-785047866889999999769979994588886510012310234432324431063468-8
Q gi|254781020|r 170 DLSSKIALLSSAMDVPL-LLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-L 247 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pi-i~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~ 247 (337)
++.+.++.+++..+.+. +...+ .+.+.++.++++|+|.|-++|..- .++ .
T Consensus 178 ~i~~ai~~~r~~~~~~~~IeVEv---~~l~q~~~a~~~g~DiI~LDnm~~-------------------------~~~~~ 229 (285)
T PRK07428 178 GIGEAITRIRQQIPYPLTIEVET---ETLEQVQEALEYGADIIMLDNMPV-------------------------DQMQQ 229 (285)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH-------------------------HHHHH
T ss_conf 99999999997489982699996---989999999966999999879999-------------------------99999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 999998522898799729888889999999838885233479999
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
++...++...++.+.++|||. -..+.+.-..|.|++.+|.+...
T Consensus 230 ~v~~l~~~~~~v~iEaSGgIn-~~ni~~yA~tGVD~Is~galt~~ 273 (285)
T PRK07428 230 AVQLIRQQNPRVKIEASGNIT-LETIRAVAETGVDYISTSAPITR 273 (285)
T ss_pred HHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHHCC
T ss_conf 999987308988999989999-99999999749999983831069
No 232
>PRK07107 inositol-5-monophosphate dehydrogenase; Validated
Probab=95.90 E-value=0.046 Score=30.55 Aligned_cols=231 Identities=12% Similarity=0.061 Sum_probs=124.7
Q ss_pred HHHHHHHHHEEECCCCCCC--CHHHCCCEEEEC--------CEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE
Q ss_conf 7475688630324557899--810174629989--------896256868501266334300025699999999809906
Q gi|254781020|r 21 RNKKFFDDWHLIHRALPEI--SFDEVDPSVEFL--------GKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM 90 (337)
Q Consensus 21 ~n~~~fd~~~l~p~~l~~~--~~~~vdlst~i~--------G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~ 90 (337)
.....|||+.|+|++- .+ .+++|||+|.+- +.+|++|++.|||+..+. ..+|.+.++.|..-
T Consensus 7 ~~~~TfDDVlLvP~~S-~v~~lp~~VdlsT~lTrf~~~~~~~I~LniPiVSAaMDTVTE-------~~MAIamA~~GGiG 78 (497)
T PRK07107 7 EPSRTFGEYLLVPGLS-TKECVPQNVSLKTPLVKFKKGEESAITLNIPLVSAIMQSVSD-------DNMAIALAREGGLS 78 (497)
T ss_pred CCCCCCCCEEECCCCC-CCCCCCCEEEECCCEEECCCCCCCCEEECCCEEECCCCCCCC-------HHHHHHHHHCCCEE
T ss_conf 7764513368755887-777683603702200321567778447568878647753050-------99999999779979
Q ss_pred ECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC----------------
Q ss_conf 6052022112866888999998664012322027521236799899998776508985762532----------------
Q gi|254781020|r 91 AVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLN---------------- 154 (337)
Q Consensus 91 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 154 (337)
++.- -++.++.......++... ..++ ..-..+.++.++.++.+..++.+..++.+.-+
T Consensus 79 VIH~--Nmsie~Qa~~V~~VKr~e-sg~I---~dPvti~p~~Tv~da~~l~~k~~~sg~PVvd~g~~~gkLvGIvT~RD~ 152 (497)
T PRK07107 79 FIFG--SQSIESEAAMVRRVKNHK-AGFV---ISDSNLTPDNTLADVLDLKERTGHSTIAVTEDGTANGKLLGIVTSRDY 152 (497)
T ss_pred EECC--CCCHHHHHHHHHHHHCCC-CCCC---CCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCEE
T ss_conf 9879--999999999999995635-6766---898175898649999998887199623451037859879999846401
Q ss_pred --------CHHHHHHHCCC-----CCHHHHHH--------------------------HHHHHHHHCCCC---------E
Q ss_conf --------03566520688-----52430799--------------------------999999873997---------1
Q gi|254781020|r 155 --------PLQEIIQPNGN-----TNFADLSS--------------------------KIALLSSAMDVP---------L 186 (337)
Q Consensus 155 --------~~~~~~~~~~~-----~~~~~~~~--------------------------~i~~l~~~~~~p---------i 186 (337)
.+-...+.... .......+ ..+.+.+....| +
T Consensus 153 rf~~~~~~~~V~~vMT~~~~Lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~g~L~gLiT~kDi~k~~~~P~a~~D~~grL 232 (497)
T PRK07107 153 RVSRMSLDTKVKDFMTPFEKLVVAKVGITLKEANNIIWDHKLNTLPIIDKNQHLVYMVFRKDYDSHKENPLELLDSSKRY 232 (497)
T ss_pred ECCCCCCCCCHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCE
T ss_conf 11136777766564067654278468899999999998634443027837995899998378888643963113767888
Q ss_pred -EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf -7850478668899999997699799945888865100123102344323244310634688999998522898799729
Q gi|254781020|r 187 -LLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASG 265 (337)
Q Consensus 187 -i~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadG 265 (337)
+.-.++.....+-++.++++|+|+++|+...|.+ ..++.++..+++....-..|..|
T Consensus 233 ~VgAAIg~~d~~eRa~~Lv~aGvD~lviD~AhGhs----------------------~~v~~~ik~ik~~~~~~~~i~aG 290 (497)
T PRK07107 233 VVGAGINTRDYEERVPALVEAGADVLCIDSSDGYS----------------------EWQKRTLDYIKEKYGDTVKVGAG 290 (497)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCH----------------------HHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 89996377789999999998599999803435352----------------------99999999999866987634145
Q ss_pred CCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 8888899999998388852334
Q gi|254781020|r 266 GLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 266 GIr~g~Dv~kAlalGAdaV~iG 287 (337)
.|-|+.-+-..+-+|||+|-+|
T Consensus 291 NVaT~~~~~~L~~aGad~vkVG 312 (497)
T PRK07107 291 NVVDRDGFLYLAEAGADFVKVG 312 (497)
T ss_pred CHHCHHHHHHHHHCCCCEEEEC
T ss_conf 2126999999998089868971
No 233
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=95.85 E-value=0.089 Score=28.84 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC-CCEEEE
Q ss_conf 999999998739971785047866889999999769-979994
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG-IRYFDI 213 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG-ad~i~v 213 (337)
.+.++.+++..+.|+|. .|....+++...+...| +|+...
T Consensus 188 l~l~~~v~~~v~iPvIA--SGGaG~~ehf~eaf~~~~adAaLA 228 (256)
T COG0107 188 LELTRAVREAVNIPVIA--SGGAGKPEHFVEAFTEGKADAALA 228 (256)
T ss_pred HHHHHHHHHHCCCCEEE--CCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 99999999648878891--189896889999998157008876
No 234
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=95.82 E-value=0.077 Score=29.21 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=62.7
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHHHCC-CCE
Q ss_conf 9998776508985762532035665206885243079999999987399717850----47866889999999769-979
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE----VGCGLSSMDIELGLKSG-IRY 210 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~----v~~~~~~~~~~~a~~aG-ad~ 210 (337)
+..+..+..+++++.+..+.-. ...-..+.++.+.+.+..+.|+++-- .+...+++...++.+.. +-+
T Consensus 86 ~~a~~A~~~Gadai~v~pP~y~-------~~s~~~l~~~~~~ia~a~~lPi~lYn~P~~tg~~l~~~~l~~L~~~pnv~g 158 (284)
T cd00950 86 ELTKRAEKAGADAALVVTPYYN-------KPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAEHPNIVG 158 (284)
T ss_pred HHHHHHHHCCCCEEEECCCCCC-------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 9999999839998996266578-------979999999999997555997798737641167888899999847999899
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 994588886510012310234432324431063468899999852289879972988888999999983888523347
Q gi|254781020|r 211 FDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 211 i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr 288 (337)
|.-+ .+ -+.....+. ....+++.|+. | ...-.+.++++||+....|.
T Consensus 159 iK~s--s~-----------------------d~~~~~~~~--~~~~~~~~v~~-G---~d~~~~~~l~~Ga~G~i~~~ 205 (284)
T cd00950 159 IKEA--TG-----------------------DLDRVSELI--ALCPDDFAVLS-G---DDALTLPFLALGGVGVISVA 205 (284)
T ss_pred EECC--CC-----------------------CHHHHHHHH--HHCCCCCEEEC-C---CHHHHHHHHHHCCCEEEEEE
T ss_conf 9858--89-----------------------899999999--86698754644-8---68999999995499699853
No 235
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=95.78 E-value=0.044 Score=30.63 Aligned_cols=225 Identities=15% Similarity=0.127 Sum_probs=123.9
Q ss_pred HHHHHHEEECCCCCCCCHH-HCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCH
Q ss_conf 5688630324557899810-174629989896256868501266334300025699999999809906605202211286
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFD-EVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDH 102 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~-~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~ 102 (337)
..|||+.|+|... .+..+ +|||+|+ .+.++++||+.|||+..+. ..+|.+.++.|..-++.-. ++.++
T Consensus 13 LTFDDVLLvP~~S-~v~~~~dV~l~tt-~~i~l~iPivSAaMDTVTE-------~~MAIamA~~GGiGvIH~N--msie~ 81 (479)
T PRK07807 13 LTYNDVFLVPSRS-DVASRFDVDLSTA-DGTGTTIPVVVANMTAVAG-------RRMAETVARRGGLVVLPQD--LPIDA 81 (479)
T ss_pred CCCCCEEECCCCC-CCCCCCCEEECCC-CCCCCCCCEEECCCCCCCC-------HHHHHHHHHCCCEEEECCC--CCHHH
T ss_conf 8834677756787-7888675261037-8988878768458754474-------9999999977985998799--99999
Q ss_pred HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCH-------------------HHHHHHC
Q ss_conf 688899999866401232202752123679989999877650898576253203-------------------5665206
Q gi|254781020|r 103 NAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPL-------------------QEIIQPN 163 (337)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 163 (337)
.+.....++. ....+. .-..+.++.++.+..+..++.+...+.+.-+.. -...+..
T Consensus 82 Qa~~V~kVK~---~~~~i~--~Pvti~pd~tv~d~~~l~~~~~~sg~pVv~~~gkLvGIvT~RDir~~d~~~~v~~vMT~ 156 (479)
T PRK07807 82 VAETVAWVKS---RDLVFD--TPVTLAPDDTVSDALALIHKRAHGAVVVVDEEGRPVGLVTEADCRGVDRFTRVGDVMST 156 (479)
T ss_pred HHHHHHHHHC---CCCEEC--CCEEECCCCCHHHHHHHHHHHCCCCCCEECCCCCEEEEEECHHHCCCCCCCCHHHHHCC
T ss_conf 9999999711---377436--99897898719999999998378887414679947889821341147777758886257
Q ss_pred CC---CCHHHHHHHHHHHH--------------------------HHCCCC---------EEEEECCCCC-CHHHHHHHH
Q ss_conf 88---52430799999999--------------------------873997---------1785047866-889999999
Q gi|254781020|r 164 GN---TNFADLSSKIALLS--------------------------SAMDVP---------LLLKEVGCGL-SSMDIELGL 204 (337)
Q Consensus 164 ~~---~~~~~~~~~i~~l~--------------------------~~~~~p---------ii~k~v~~~~-~~~~~~~a~ 204 (337)
.. .......+..+-+. +....| .+.--++... ..+-++.+.
T Consensus 157 ~lvt~~~g~sl~eA~~lL~~~kiekLpvVd~~~~L~gLiT~kDi~k~~~~~~a~D~~grL~VgAAVGv~~d~~eR~~aLv 236 (479)
T PRK07807 157 DLVTLPAGTDPRKAFDLLEAAPVKVAPVVDADGRLAGVLTRTGALRATIYTPAVDAAGRLRVAAAVGINGDVAAKARALL 236 (479)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCCCEEECCCCEEEEEEEEEHHHHCCCCCCCCCHHHCEEEEEEECCCCCHHHHHHHHH
T ss_conf 73661366787999999975352311377569929999996116454468877782234567887257845899999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
++|+|.++|+...|.+ ...++.+..+++...+++ +..|-|.|..-+...+-+|||++
T Consensus 237 ~AGvDvlvIDtAHGhS----------------------~~vi~~vk~iK~~~p~~~-viaGNvaT~~~a~~Li~aGad~i 293 (479)
T PRK07807 237 EAGVDVLVIDTAHGHQ----------------------EKMLEAIRAVRALDPGVP-LVAGNVVTAEGTRDLVEAGADIV 293 (479)
T ss_pred HCCCCEEEEECCCCCH----------------------HHHHHHHHHHHHHCCCCC-EEEEEHHHHHHHHHHHHCCCCEE
T ss_conf 7699899975457664----------------------899999999984089885-78743202999999997399976
Q ss_pred HHH
Q ss_conf 334
Q gi|254781020|r 285 GLA 287 (337)
Q Consensus 285 ~iG 287 (337)
-+|
T Consensus 294 kvG 296 (479)
T PRK07807 294 KVG 296 (479)
T ss_pred ECC
T ss_conf 315
No 236
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=95.78 E-value=0.08 Score=29.11 Aligned_cols=117 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHHCCCCEE
Q ss_conf 99987765089857625320356652068852430799999999873997178504----78668899999997699799
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV----GCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v----~~~~~~~~~~~a~~aGad~i 211 (337)
...+..+..+++++.+..+.-. ....+.+.+..+.+.+..+.|+++--. +...+++..+++.+. ..|
T Consensus 83 ~~a~~a~~~Gad~i~v~pP~y~-------~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~l~~~~l~~L~~~--~nv 153 (281)
T cd00408 83 ELARHAEEAGADGVLVVPPYYN-------KPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEH--PNI 153 (281)
T ss_pred HHHHHHHHCCCCEEEECCCCCC-------CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHCC--CCE
T ss_conf 9999999759998998799777-------8999999999999985559977997277531677689999998489--998
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 945888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
+-.-... + -......+ .+...+++.|+ .|. ....+.++.+||+....|..
T Consensus 154 ~giK~s~-------------~---------d~~~~~~~--~~~~~~~~~v~-~G~---d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 154 VGIKDSS-------------G---------DLDRLTRL--IALLGPDFAVL-SGD---DDLLLPALALGADGAISGAA 203 (281)
T ss_pred EEEECCC-------------C---------CHHHHHHH--HHHCCCCCEEE-CCC---HHHHHHHHHCCCCCEEECHH
T ss_conf 9998488-------------9---------99999999--99759970562-696---68899998728981440242
No 237
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.12 Score=27.99 Aligned_cols=176 Identities=17% Similarity=0.178 Sum_probs=92.2
Q ss_pred CHHHHCCHHH-HHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 0221128668-889999986640123220275212367998999987765089857625320356652068852430799
Q gi|254781020|r 95 QRVMFSDHNA-IKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSS 173 (337)
Q Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (337)
.++.+...++ .....+++..|+.++.+-.. ..+.+.-+.+.+.+ .++|.+-+.- . .+......
T Consensus 34 vGTpLik~eG~~aV~~lr~~~pd~~IvAD~K----t~D~G~~e~~ma~~-aGAd~~tV~g--~---------A~~~TI~~ 97 (217)
T COG0269 34 VGTPLIKAEGMRAVRALRELFPDKIIVADLK----TADAGAIEARMAFE-AGADWVTVLG--A---------ADDATIKK 97 (217)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCEEEEEEE----ECCHHHHHHHHHHH-CCCCEEEEEE--C---------CCHHHHHH
T ss_conf 0769999851799999998789986886203----22404899999997-3898799980--4---------88899999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCH-HHHHHHH
Q ss_conf 999999873997178504786688999999976997999458888651001231023443232443106346-8899999
Q gi|254781020|r 174 KIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPT-PLSLEMA 252 (337)
Q Consensus 174 ~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~-~~al~~~ 252 (337)
.++. ...++..+.+-++++-.-....+++.++|+|-+.+-- | | +. .-.|... ...|-.+
T Consensus 98 ~i~~-A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~--g---------~--D~------q~~G~~~~~~~l~~i 157 (217)
T COG0269 98 AIKV-AKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHR--G---------R--DA------QAAGKSWGEDDLEKI 157 (217)
T ss_pred HHHH-HHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEEEE--C---------C--CH------HHHCCCCCHHHHHHH
T ss_conf 9999-9983986999851689999999999971897899970--4---------3--47------650899417789999
Q ss_pred HHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 85228-9879972988888999999983888523347999984146689999999999999
Q gi|254781020|r 253 RPYCN-EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEF 312 (337)
Q Consensus 253 ~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el 312 (337)
+...+ .+.|-..|||. ..|+-.+...|++.|-+||++-.+ +...+..+.++++|
T Consensus 158 k~~~~~g~~vAVaGGI~-~~~i~~~~~~~~~ivIvGraIt~a-----~dp~~~a~~~~~~i 212 (217)
T COG0269 158 KKLSDLGAKVAVAGGIT-PEDIPLFKGIGADIVIVGRAITGA-----KDPAEAARKFKEEI 212 (217)
T ss_pred HHHHCCCCEEEEECCCC-HHHHHHHHCCCCCEEEECCHHCCC-----CCHHHHHHHHHHHH
T ss_conf 98623683599866878-878899864899799988221489-----99799999999986
No 238
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.74 E-value=0.13 Score=27.94 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=62.6
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
++..|...+...++ ++ +..+.+.+..+.+.|+|.|-++---.+.. +.....+ .| +..+.....
T Consensus 92 ~~~aR~~lg~~~iI-G~-S~h~~~e~~~A~~~gaDYig~Gpif~T~T------K~~~~~p------~G---~~~l~~~~~ 154 (211)
T PRK03512 92 TTDLNAIRAAGLRL-GV-STHDDMEIDVALAARPSYIALGHVFPTQT------KQMPSAP------QG---LAQLARHVE 154 (211)
T ss_pred HHHHHHHCCCCCEE-EE-ECCCHHHHHHHHHCCCCEEEECCCCCCCC------CCCCCCC------CH---HHHHHHHHH
T ss_conf 89999866999789-97-42999999999864998399856334588------7899887------24---999999999
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 228987997298888899999998388852334799998
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
...++||++-||| +..++.+.+..||+.|.+-++++.+
T Consensus 155 ~~~~iPvvAIGGI-~~~n~~~v~~~Ga~gvAViSaI~~a 192 (211)
T PRK03512 155 RLADYPTVAIGGI-SLERAPAVLATGVGSIAVVSAITQA 192 (211)
T ss_pred HCCCCCEEEECCC-CHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 7179998998896-8999999998399999995187469
No 239
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=95.73 E-value=0.013 Score=33.77 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=35.2
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 99852289879972988888999999983888523347999
Q gi|254781020|r 251 MARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 251 ~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
.....-.++|+|.-||||+...+.++...|||.|-+|+.+-
T Consensus 175 ~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ie 215 (231)
T pfam01884 175 AVKKVLDDARLIVGGGIKSGEKAKEMARAGADVIVTGNVIE 215 (231)
T ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCEE
T ss_conf 99964689768996997999999999977999999797144
No 240
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=95.69 E-value=0.13 Score=27.81 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=77.3
Q ss_pred HHHHHHHHHCC--EEECCCCHHHH-C-CHHHHHHHH--HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99999998099--06605202211-2-866888999--998664012322027521236799899998776508985762
Q gi|254781020|r 78 NLAIAAEKTKV--AMAVGSQRVMF-S-DHNAIKSFE--LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFL 151 (337)
Q Consensus 78 ~lA~aa~~~g~--~~~~g~~~~~~-~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (337)
.+..-.-+.|+ .++.|+.+... . .++-....+ +.......+++...+. .....+ +..+..+..+++++.+
T Consensus 26 ~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gvg~---~t~~ai-~la~~A~~~Gadai~v 101 (296)
T PRK03620 26 EHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAGAGG---GTAQAI-EYAQAAERAGADGILL 101 (296)
T ss_pred HHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCC---CHHHHH-HHHHHHHHCCCCEEEE
T ss_conf 999999977999899684231343489999999999999983897359825775---379999-9999999829998996
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHC--CCCEEEECCCCCCCCCCHHHHC
Q ss_conf 53203566520688524307999999998739971785047-86688999999976--9979994588886510012310
Q gi|254781020|r 152 HLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVG-CGLSSMDIELGLKS--GIRYFDIAGRGGTSWSRIESHR 228 (337)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~-~~~~~~~~~~a~~a--Gad~i~v~~~gG~~~~~~~~~r 228 (337)
..+.- ....-..+.++.+.+.+.++.|+++--.+ ....++...++.+. .+-+|.=+ .|
T Consensus 102 ~pPyy-------~~~~~~~l~~~~~~ia~a~~lPi~lYn~~~~~~~~~~l~~L~~~~pnivgiKds--s~---------- 162 (296)
T PRK03620 102 LPPYL-------TEAPQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLAERCPNLIGFKDG--VG---------- 162 (296)
T ss_pred CCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEC--CC----------
T ss_conf 69867-------899999999999999983189977517888776999999999728988999958--68----------
Q ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHHCCCEEHHH
Q ss_conf 234432324431063468899999852289879972988888-99999998388852334
Q gi|254781020|r 229 DLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG-VDILKSIILGASLGGLA 287 (337)
Q Consensus 229 ~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g-~Dv~kAlalGAdaV~iG 287 (337)
. +.....+ .....+++.++ +|+-+. .-....+++|++....+
T Consensus 163 ----d---------~~~~~~~--~~~~~~~~~v~--~G~~~~~~~~~~~~~~G~~g~~s~ 205 (296)
T PRK03620 163 ----D---------IELMVRI--TRALGDRLLYL--GGLPTAEVFAAAYLALGVPTYSSA 205 (296)
T ss_pred ----C---------HHHHHHH--HHHCCCCEEEE--ECCCHHHHHHHHHHCCCCCEEEEC
T ss_conf ----8---------9999999--99769975998--289644788889962888578403
No 241
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=95.66 E-value=0.14 Score=27.74 Aligned_cols=77 Identities=19% Similarity=0.308 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
-+..++.++..|-|.+++-+.+.++.-...-.-+ -+++..+|+..+.|+++=+...+ .-++.++++|.|.--|-|
T Consensus 155 P~~A~~Fve~TGvDSLAvAIGTAHGlY~~aP~LD----F~RL~~IR~~v~vPLVLHGASdv-pde~v~~~IeLGi~KvNV 229 (282)
T TIGR01858 155 PDEAKEFVEATGVDSLAVAIGTAHGLYKEAPKLD----FDRLAKIREKVDVPLVLHGASDV-PDEDVRRTIELGICKVNV 229 (282)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC----HHHHHHHHHCCCCCEEECCCCCC-CHHHHHHHHHHCCCEEEC
T ss_conf 6899999874275478898866532321267533----78998752203777242177788-767899998707413411
Q ss_pred CC
Q ss_conf 58
Q gi|254781020|r 214 AG 215 (337)
Q Consensus 214 ~~ 215 (337)
..
T Consensus 230 AT 231 (282)
T TIGR01858 230 AT 231 (282)
T ss_pred CH
T ss_conf 11
No 242
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=95.61 E-value=0.11 Score=28.33 Aligned_cols=116 Identities=16% Similarity=0.160 Sum_probs=62.3
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHC--CCCEEE
Q ss_conf 99987765089857625320356652068852430799999999873997178504-786688999999976--997999
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKS--GIRYFD 212 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~a--Gad~i~ 212 (337)
+..+..+..+++++.+..+.- ....-+.+.++.+.+.+.++.|+++--- +...+++....+++. .+-+|.
T Consensus 90 ~la~~a~~~Gad~v~v~pPyy-------~~~~~~~l~~~f~~ia~a~~~pi~lYn~~~~~~~~~~l~~L~~~~p~i~giK 162 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYL-------INGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLADRCPNLVGFK 162 (296)
T ss_pred HHHHHHHHCCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEE
T ss_conf 999999875999789779988-------9999999999999999715997787307787879999999981579879999
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-HHHHCCCCEEEECCCCCC-HHHHHHHHHHCCCEEHHHH
Q ss_conf 458888651001231023443232443106346889999-985228987997298888-8999999983888523347
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM-ARPYCNEAQFIASGGLRN-GVDILKSIILGASLGGLAS 288 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~-~~~~~~~v~IiadGGIr~-g~Dv~kAlalGAdaV~iGr 288 (337)
-+. + .+..+.+ .+..++++.++ +|+-+ ..=+...+++|++...-+.
T Consensus 163 ~s~--~--------------------------d~~~~~~~~~~~~~~~~~~--~g~~~~d~~~~~~~~~G~~g~i~~~ 210 (296)
T TIGR03249 163 DGI--G--------------------------DMEQMIEITQRLGDRLGYL--GGMPTAEVTAPAYLPLGVTSYSSAI 210 (296)
T ss_pred ECC--C--------------------------CHHHHHHHHHHCCCCCEEE--ECCCCHHHHHHHHHHCCCCEEEEHH
T ss_conf 776--6--------------------------8999999999739972797--3897128999999938998996246
No 243
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=95.59 E-value=0.077 Score=29.22 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 99999999873997178504786688999999976997999458
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.+.++.+++.++.|++. .|.+.+.++.+.+.+.|+++++|+.
T Consensus 179 ~~ll~~i~~~~~~p~i~--~GGv~s~~di~~l~~~g~~gvivgs 220 (234)
T cd04732 179 FELYKELAAATGIPVIA--SGGVSSLDDIKALKELGVAGVIVGK 220 (234)
T ss_pred HHHHHHHHHHCCCCEEE--EECCCCHHHHHHHHHCCCCEEEEEH
T ss_conf 99999998657998999--8189999999999977998999988
No 244
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.58 E-value=0.12 Score=28.17 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=60.7
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHC--CCCEEEE
Q ss_conf 9987765089857625320356652068852430799999999873997178504-786688999999976--9979994
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKS--GIRYFDI 213 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~a--Gad~i~v 213 (337)
..+..+..+++++.+..+.- ....-..+.++.+.+.+.++.|+++--. +...+++...++.+. +.-+|.-
T Consensus 86 la~~a~~~Gadav~v~pPy~-------~~~~~~~l~~~~~~ia~a~~lpi~lYn~~~~~~~~~~l~~L~~~~p~i~giK~ 158 (289)
T cd00951 86 YAQAAEKAGADGILLLPPYL-------TEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAERCPNLVGFKD 158 (289)
T ss_pred HHHHHHHCCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 99999975999999769888-------89999999999999998469986614887767789999999983687899997
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHHCCCEEHHHH
Q ss_conf 588886510012310234432324431063468899999852289879972988888-999999983888523347
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG-VDILKSIILGASLGGLAS 288 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g-~Dv~kAlalGAdaV~iGr 288 (337)
+. + .+.....+ .....+++.+ . +|.-+. .=....+++||+....+.
T Consensus 159 s~--~-----------------------d~~~~~~~--~~~~~~~~~~-~-~g~~~~~~~~~~~~~~G~~g~~~~~ 205 (289)
T cd00951 159 GV--G-----------------------DIELMRRI--VAKLGDRLLY-L-GGLPTAEVFALAYLAMGVPTYSSAV 205 (289)
T ss_pred CC--C-----------------------CHHHHHHH--HHHCCCCCEE-E-ECCCCCHHHHHHHHCCCCEEEEHHH
T ss_conf 88--8-----------------------99999999--9975998289-8-5898337999999849984982675
No 245
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.56 E-value=0.15 Score=27.52 Aligned_cols=95 Identities=14% Similarity=-0.019 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
Q ss_conf 30799999999873997-17850478668899999997699799945888865100123102344323244310634688
Q gi|254781020|r 169 ADLSSKIALLSSAMDVP-LLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL 247 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~p-ii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~ 247 (337)
.++.+.++.+++..+.. .+.. -+.+.+.++.++++|+|.|.++|..- +.. -.
T Consensus 165 g~~~~ai~~~r~~~~~~~kIeV---Ev~~l~ea~~a~~~gaDiI~LDn~~~------e~~------------------k~ 217 (272)
T PRK05848 165 KDLKSFIQHARKNIPFTAKIEI---ECESLEEAKEAMNAGADIVMCDNMSV------EET------------------KE 217 (272)
T ss_pred CCHHHHHHHHHHHCCCCCEEEE---ECCCHHHHHHHHHCCCCEEEECCCCH------HHH------------------HH
T ss_conf 6899999999985899846999---74999999999845999899589999------999------------------99
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 99999852289879972988888999999983888523347999
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
++........++.+.++|||. -..+.+.-..|.|++.+|....
T Consensus 218 ~v~~~~~~~~~v~ieaSGGI~-~~ni~~yA~~GvD~Is~g~lth 260 (272)
T PRK05848 218 IVAYRNANYPHVLLEASGNIS-LETINAYAKSGVDAISSGSLIH 260 (272)
T ss_pred HHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHHC
T ss_conf 999874648877999979998-9999999965999998797767
No 246
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.55 E-value=0.13 Score=27.87 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=60.6
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHHC-CCCE
Q ss_conf 99987765089857625320356652068852430799999999873997178504----786688999999976-9979
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV----GCGLSSMDIELGLKS-GIRY 210 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v----~~~~~~~~~~~a~~a-Gad~ 210 (337)
+..+..+..|++++.+..+.-. ...-....++.+.+.+.++.|+++--. +...+++...++.+. +..+
T Consensus 90 ~~a~~a~~~Gad~v~~~pP~y~-------~~~~~~i~~~f~~va~a~~~pi~iYn~P~~tg~~~~~~~l~~L~~~~~i~g 162 (294)
T PRK04147 90 ELAKYATELGYDAISAVTPFYY-------PFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFTLPKIIG 162 (294)
T ss_pred HHHHHHHHCCCCEEEECCCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEE
T ss_conf 9999999759988997278677-------899899999999998504997788756754167889999999956899889
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 9945888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 211 FDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 211 i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
|--+ .+ . +..+..+.....+. ++..| ...-.+.++++||+.+.-+.+
T Consensus 163 iK~s--~~--------------d------------~~~~~~i~~~~~~~-~v~~G---~d~~~~~~~~~Ga~G~i~~~~ 209 (294)
T PRK04147 163 VKQT--AG--------------D------------LYQLERIRKAFPDK-LIYNG---FDEMFLSGLLAGADGAIGSTY 209 (294)
T ss_pred EEEC--CC--------------C------------HHHHHHHHHHCCCE-EEEEC---CHHHHHHHHHCCCCEEEECHH
T ss_conf 9928--89--------------9------------99999999748984-99958---658799999879969994479
No 247
>PRK08999 hypothetical protein; Provisional
Probab=95.55 E-value=0.047 Score=30.48 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 78668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 192 GCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
.+..+.+.+..|.+.|+|.+.+|---.| ..+|... ..|.. .+..... .-.+||++-|||. ..
T Consensus 231 aScH~~~e~~~A~~~g~Dyi~lsPV~~T-----------~shp~~~--~lGw~---~f~~l~~-~~~iPv~ALGGi~-~~ 292 (312)
T PRK08999 231 ASCHNAEELAHAQQLGVDFAVLSPVQPT-----------ASHPGAP--PLGWD---GFAALIA-GVPLPVYALGGMG-PG 292 (312)
T ss_pred EECCCHHHHHHHHHHCCCEEEECCCCCC-----------CCCCCCC--CCCHH---HHHHHHH-HCCCCEEEECCCC-HH
T ss_conf 9629999999998708996998154464-----------7899999--67899---9999997-3899989988889-99
Q ss_pred HHHHHHHHCCCEEHHHHHHH
Q ss_conf 99999983888523347999
Q gi|254781020|r 272 DILKSIILGASLGGLASPFL 291 (337)
Q Consensus 272 Dv~kAlalGAdaV~iGr~~l 291 (337)
|+-.++..||..|..=|.||
T Consensus 293 dl~~a~~~Ga~GiA~Ir~~w 312 (312)
T PRK08999 293 DLEEAREHGAQGIAGIRGFW 312 (312)
T ss_pred HHHHHHHHCCEEEEEEEECC
T ss_conf 99999980996997763159
No 248
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=95.53 E-value=0.11 Score=28.20 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 30799999999873997178504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
+-+.+.|+++|+. +.+...-+.-.-..+.+...++||+|-++|.++- .+. .++.+. +.-++ .
T Consensus 120 eLl~~ri~~vr~a--G~i~Av~lsPq~~~~~a~~vv~AG~DLLvIqgT~----vSa---ehv~~e--------~~E~L-n 181 (376)
T TIGR01304 120 ELLGKRIAEVRDA--GVITAVRLSPQNASKLAPVVVEAGADLLVIQGTV----VSA---EHVSSE--------SGEPL-N 181 (376)
T ss_pred HHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHCCCEEEEHHHH----HHH---EEECCC--------CCCCH-H
T ss_conf 4789999999726--8489998665316788899997173004200123----201---004688--------88721-4
Q ss_pred HHH-HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 999-985228987997298888899999998388852334
Q gi|254781020|r 249 LEM-ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 249 l~~-~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
|.+ |.++ +||||+ ||+-+..=.+..|.-||-+|.||
T Consensus 182 Lk~fi~eL--DvPVv~-Ggv~~Y~~ALhLMRtGAagvlVG 218 (376)
T TIGR01304 182 LKKFIQEL--DVPVVA-GGVVTYTTALHLMRTGAAGVLVG 218 (376)
T ss_pred HHHHHHHC--CCCEEE-CCCCCHHHHHHHHHHCCEEEEEC
T ss_conf 88897548--988788-38530889999863011378864
No 249
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=95.49 E-value=0.16 Score=27.37 Aligned_cols=137 Identities=14% Similarity=0.114 Sum_probs=78.2
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC-CCCEEEEC--CC
Q ss_conf 7765089857625320356652068852430799999999873997178504786688999999976-99799945--88
Q gi|254781020|r 140 AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKS-GIRYFDIA--GR 216 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~a-Gad~i~v~--~~ 216 (337)
.....+++.+.+|..... .....++++++.--.+-++ +...+..+......+. -+|.|.+= +.
T Consensus 81 ~~~~~gad~I~~H~E~~~------------~~~~~i~~ik~~g~k~GlA--lnP~T~i~~l~~~l~~~~iD~VLlMsV~P 146 (224)
T PTZ00170 81 SFAKAGASQFTFHIEATE------------DPKAVARKIRAAGMQVGVA--LKPKTPAEELFPLIDAGLVDMVLVMTVEP 146 (224)
T ss_pred HHHHCCCCEEEECCCCCC------------CHHHHHHHHHHHCCCEEEE--ECCCCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 998628967998500133------------9999999999714764556--07999879999997114457899985569
Q ss_pred C--CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH
Q ss_conf 8--86510012310234432324431063468899999852289879972988888999999983888523347999984
Q gi|254781020|r 217 G--GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA 294 (337)
Q Consensus 217 g--G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~ 294 (337)
| |.... -..+.-+.+.++...++.|..||||.. .-+-+...+|||.+-.|++++..
T Consensus 147 Gf~GQ~Fi--------------------~~~l~KI~~lr~~~~~~~I~VDGGIn~-~ti~~l~~aGad~~V~GSaiF~~- 204 (224)
T PTZ00170 147 GFGGQSFM--------------------HDMMPKVRQLRQRYPHLNIQVDGGINP-DTIDLAAEAGANVIVAGTSIFKA- 204 (224)
T ss_pred CCCCCCCC--------------------HHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHHHCC-
T ss_conf 98762145--------------------889999999985489975999589998-99999998699999978588679-
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1466899999999999999999
Q gi|254781020|r 295 MDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 295 ~~G~~gv~~~l~~l~~el~~~m 316 (337)
+-....++.|++.++..+
T Consensus 205 ----~d~~~~i~~lr~~i~~~~ 222 (224)
T PTZ00170 205 ----NDRKESIETLRRSVQKHL 222 (224)
T ss_pred ----CCHHHHHHHHHHHHHHHC
T ss_conf ----999999999999999762
No 250
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=95.42 E-value=0.17 Score=27.23 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
Q ss_conf 307999999998739-9717850478668899999997699799945888865100123102344323244310634688
Q gi|254781020|r 169 ADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL 247 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~ 247 (337)
.+..+.++.+|+..+ .+.+...+ .+.+.++.++++|+|.|.++|..- +
T Consensus 166 g~i~~av~~~r~~~~~~~~IeVEv---~s~~e~~~a~~~gadiI~LDn~sp----------------------------e 214 (268)
T cd01572 166 GSITEAVRRARAAAPFTLKIEVEV---ETLEQLKEALEAGADIIMLDNMSP----------------------------E 214 (268)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------H
T ss_conf 789999999998679985299994---889999999975999999779999----------------------------9
Q ss_pred HHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 99999-852289879972988888999999983888523347999
Q gi|254781020|r 248 SLEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 248 al~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
.+.++ ...+.++.+-++|||. -..+.+.-..|.|++.+|.+..
T Consensus 215 ~~~~~v~~~~~~v~ieaSGgIn-~~ni~~ya~~GvD~Is~g~lt~ 258 (268)
T cd01572 215 ELREAVALLKGRVLLEASGGIT-LENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHHC
T ss_conf 9999999866956999989998-9999999975999998385436
No 251
>PRK13132 consensus
Probab=95.41 E-value=0.17 Score=27.21 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 27521236799899998776508985762532035665206885243079999999987399717850478668899999
Q gi|254781020|r 123 LGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIEL 202 (337)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~ 202 (337)
..+.+....++.+...+.....+.+++.+ .+.|.+. .+.+.......+...+.-..+ ++++-.+.
T Consensus 91 M~Y~N~i~~~G~e~F~~~~~~~GvdGlIi-pDLP~ee------------~~~~~~~~~~~~i~~I~lvaP--Ts~~R~~~ 155 (246)
T PRK13132 91 LVYYNLIFAYGLEKFVKKAKELGISGLIV-PDLPFEE------------SEELIKECEKYNIALIPLISV--TSPKRAKK 155 (246)
T ss_pred EEECHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEEECC--CCHHHHHH
T ss_conf 96010887729999999998769985775-7999789------------899999999859970144257--97899999
Q ss_pred HHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH-HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 997699799945888865100123102344323244310634688-9999985228987997298888899999998388
Q gi|254781020|r 203 GLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL-SLEMARPYCNEAQFIASGGLRNGVDILKSIILGA 281 (337)
Q Consensus 203 a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~-al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGA 281 (337)
..+..-.+|..-.+-|.|+.... -.+.+. .+..++.. .+.||..-=||++..|+-+ +.-+|
T Consensus 156 i~~~s~gfiY~vs~~GvTG~~~~----------------~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~-~~~~a 217 (246)
T PRK13132 156 ILKHAKGFIYALGSIGVTGTKSV----------------EEARLKDKVKEIKSF-TDLPVAVGFGIKNNQDVKR-MRKYA 217 (246)
T ss_pred HHHCCCCCEEEEECCCCCCCCCC----------------CHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHH-HHHCC
T ss_conf 99548982799753567777666----------------368899999999962-8998699779899999999-98229
Q ss_pred CEEHHHHHHHHHHCC-CHHHHHHHHH
Q ss_conf 852334799998414-6689999999
Q gi|254781020|r 282 SLGGLASPFLKPAMD-SSDAVVAAIE 306 (337)
Q Consensus 282 daV~iGr~~l~~~~~-G~~gv~~~l~ 306 (337)
|.|-+|++++....+ +.+.+.++++
T Consensus 218 DGvIVGSa~v~~i~~~~~~~~~k~i~ 243 (246)
T PRK13132 218 DGVIVGTSIVKLFKKFSLDEIMKDIE 243 (246)
T ss_pred CEEEECHHHHHHHHHCCHHHHHHHHH
T ss_conf 99997099999998729688999999
No 252
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.40 E-value=0.12 Score=28.03 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCEEEECHHH-HHHHHCHHHHHHHHHHHHHHCC--EEECCCCHHHH--CCHHHHHHHHH-HHHCC-CHHHHHCCCCCCCC
Q ss_conf 6868501266-3343000256999999998099--06605202211--28668889999-98664-01232202752123
Q gi|254781020|r 57 FPLLISSMTG-GNNKMIERINRNLAIAAEKTKV--AMAVGSQRVMF--SDHNAIKSFEL-RQYAP-HTVLISNLGAVQLN 129 (337)
Q Consensus 57 ~Pv~iapmsg-g~~~~~~~~~~~lA~aa~~~g~--~~~~g~~~~~~--~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~ 129 (337)
+|.++.|++- |. ........+.+-.-+.|+ .+..|+.+... ..++-...++. .+... ..+++...+.....
T Consensus 9 i~a~vTPF~~dg~--vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~ 86 (299)
T COG0329 9 IPALVTPFDEDGS--VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTA 86 (299)
T ss_pred EECCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH
T ss_conf 0120389989998--39999999999999849988997986657221699999999999999968977789862877799
Q ss_pred CCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEC----CCCCCHHHHHHHHH
Q ss_conf 67998999987765089857625320356652068852430799999999873997178504----78668899999997
Q gi|254781020|r 130 YDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEV----GCGLSSMDIELGLK 205 (337)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v----~~~~~~~~~~~a~~ 205 (337)
. .-+..+..+..++|++.+..+.-. ....+++.++.+.+.+..+.|+++--+ +.-.+++...++.+
T Consensus 87 --e-ai~lak~a~~~Gad~il~v~PyY~-------k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 87 --E-AIELAKHAEKLGADGILVVPPYYN-------KPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred --H-HHHHHHHHHHCCCCEEEEECCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHC
T ss_conf --9-999999999709999998489788-------989799999999999851899899978752489999999999827
Q ss_pred CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 6997999458888651001231023443232443106346889999985228-987997298888899999998388852
Q gi|254781020|r 206 SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN-EAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 206 aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
--..+-+-...| + +.....+.. ...+ +. ++..|. ....+-++++|++.+
T Consensus 157 -~~nivgiKd~~g----d-------------------~~~~~~~~~--~~~~~~f-~v~~G~---d~~~~~~~~~G~~G~ 206 (299)
T COG0329 157 -HPNIVGVKDSSG----D-------------------LDRLEEIIA--ALGDRDF-IVLSGD---DELALPALLLGADGV 206 (299)
T ss_pred -CCCEEEEEECCC----C-------------------HHHHHHHHH--HCCCCCE-EEEECC---HHHHHHHHHCCCCEE
T ss_conf -898899984788----9-------------------999999998--6487662-898266---588889986779858
Q ss_pred HHHH
Q ss_conf 3347
Q gi|254781020|r 285 GLAS 288 (337)
Q Consensus 285 ~iGr 288 (337)
-.+.
T Consensus 207 is~~ 210 (299)
T COG0329 207 ISVT 210 (299)
T ss_pred EECC
T ss_conf 8410
No 253
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=95.36 E-value=0.17 Score=27.12 Aligned_cols=74 Identities=18% Similarity=0.122 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH-CCCCEEE
Q ss_conf 899998776508985762532035665206885243079999999987399717850478668899999997-6997999
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLK-SGIRYFD 212 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~-aGad~i~ 212 (337)
..+..+..+..|++.+.+|......... ...-|+.++++++..+.|++. =|.+.+.+++....+ .|+|++-
T Consensus 140 ~~~~~~~l~~~G~~~itvH~Rt~~q~~~------g~a~w~~i~~~k~~~~ipvi~--NGdi~~~~d~~~~l~~tg~dgvM 211 (309)
T pfam01207 140 AVEIARRVEDAGAQALTVHGRTRAQNYE------GPADWDAIKQVKQAVSIPVIA--NGDITDAEDAQRCLSYTGADGVM 211 (309)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHCCC------CCCCHHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9999999984688879996763240267------865418999999858982898--08948899999998610999999
Q ss_pred ECC
Q ss_conf 458
Q gi|254781020|r 213 IAG 215 (337)
Q Consensus 213 v~~ 215 (337)
++-
T Consensus 212 igR 214 (309)
T pfam01207 212 IGR 214 (309)
T ss_pred ECH
T ss_conf 848
No 254
>PRK13138 consensus
Probab=95.36 E-value=0.17 Score=27.11 Aligned_cols=164 Identities=12% Similarity=0.046 Sum_probs=93.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 75212367998999987765089857625320356652068852430799999999873997178504786688999999
Q gi|254781020|r 124 GAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELG 203 (337)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a 203 (337)
.+.+.-...+.+...+.....+.+++.+ ++.|.+. ....+.... ....+...+. ++.-.++.+..+..
T Consensus 97 ~Y~N~i~~~G~e~F~~~~~~~GvdGlIi-pDLP~e~---------~E~~~~~~~-~~~~~i~~I~-liaPtt~~~Ri~~i 164 (264)
T PRK13138 97 TYFNPLFSMGLEAFTERAKNSGIQGLII-PDLPFDT---------PEAEEFFSQ-LERKKIDFIH-LVTPATTEDRIQSM 164 (264)
T ss_pred EEHHHHHHHCHHHHHHHHHHCCCCEEEC-CCCCCCC---------HHHHHHHHH-HHHCCCCEEE-ECCCCCCHHHHHHH
T ss_conf 2123898848999999998769775853-6898650---------335999999-9986998675-21799989999999
Q ss_pred HHCCCCEEE-ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCC
Q ss_conf 976997999-4588886510012310234432324431063468899999852289879972988888999999983888
Q gi|254781020|r 204 LKSGIRYFD-IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGAS 282 (337)
Q Consensus 204 ~~aGad~i~-v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAd 282 (337)
.+..-.+|. ||-.| .|+..-. . .-.....+..+++. .++||..-=||++..| +|.+..+||
T Consensus 165 ~~~s~gFiY~Vs~~G-vTG~~~~-----~----------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~-~~~~~~~AD 226 (264)
T PRK13138 165 KSFASGFIYYVTSYG-VTGERGA-----I----------ASGLEDRIQMVRKI-VGLPVCAGFGISTADQ-AKEISTYAD 226 (264)
T ss_pred HHHCCCEEEEEECCC-CCCCCCC-----C----------CHHHHHHHHHHHHH-CCCCEEEEECCCCHHH-HHHHHHCCC
T ss_conf 973888089875456-6787655-----5----------37699999999974-3898388606798999-999983499
Q ss_pred EEHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 523347999984146---68999999999999999999
Q gi|254781020|r 283 LGGLASPFLKPAMDS---SDAVVAAIESLRKEFIVSMF 317 (337)
Q Consensus 283 aV~iGr~~l~~~~~G---~~gv~~~l~~l~~el~~~m~ 317 (337)
.|-+|+++...+.+. .+...+.+..+..||+..|.
T Consensus 227 GvIVGSaiv~~i~~~~~~~~~~~~~v~~~~~~lk~~~k 264 (264)
T PRK13138 227 GVIIGSAVQKIIEENGSDRENCADKLFAYASEIRASMK 264 (264)
T ss_pred EEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99981999999997278777899999999999999639
No 255
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.26 E-value=0.19 Score=26.93 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=46.4
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH-CCCCEEEECCCCCC-HHHHHHH
Q ss_conf 999999769979994588886510012310234432324431063468899999852-28987997298888-8999999
Q gi|254781020|r 199 DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY-CNEAQFIASGGLRN-GVDILKS 276 (337)
Q Consensus 199 ~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~-~~~v~IiadGGIr~-g~Dv~kA 276 (337)
.++.+.++|+|+++.+.+. ++.+..++.. ..+. ++...|||- +...-.|
T Consensus 131 ~~~~a~~~g~~Gvv~~~~~----------------------------~~~~~~ir~~~~~~~-~ivtPGI~~~~~~~~~a 181 (215)
T PRK13813 131 LAKLANEAGAFGVVAPATR----------------------------PERVRAIRRRLGDDL-KIISPGIGAQGGKASDA 181 (215)
T ss_pred HHHHHHHCCCCEEEECCCC----------------------------HHHHHHHHHHCCCCC-EEECCCCCCCCCCHHHH
T ss_conf 9999998699989978988----------------------------799999998628874-69857616799998999
Q ss_pred HHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 983888523347999984146689999999999999
Q gi|254781020|r 277 IILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEF 312 (337)
Q Consensus 277 lalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el 312 (337)
+..|||.+-+||+...+ .-|. ...+.+++||
T Consensus 182 i~~Gad~iVVGR~It~A--~dP~---~aa~~i~~~i 212 (215)
T PRK13813 182 IKAGADYVIVGRSIYNA--ADPR---EAAKKIREEI 212 (215)
T ss_pred HHHCCCEEEECCCCCCC--CCHH---HHHHHHHHHH
T ss_conf 98189999989433589--9999---9999999986
No 256
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.25 E-value=0.098 Score=28.60 Aligned_cols=25 Identities=20% Similarity=-0.009 Sum_probs=14.3
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 4786688999999976997999458
Q gi|254781020|r 191 VGCGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 191 v~~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.|.+.+.++...+.+.|+++++++-
T Consensus 188 sGGv~s~~Dl~~l~~~g~~gvivG~ 212 (228)
T PRK04128 188 AGGVSSIEDVKKLAEIGFSGAIIGK 212 (228)
T ss_pred ECCCCCHHHHHHHHHCCCCEEEEEH
T ss_conf 7898999999999967998999985
No 257
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=95.24 E-value=0.17 Score=27.25 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899999997699799
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
.+.++...+ ...++|.+.-+++--....... .++ ++.++++++ .+.|++.- |.+.+|+.++++.++|++++
T Consensus 100 st~eea~~A-~~~G~D~I~TTL~GYT~~t~~~-~pD----~~ll~~l~~-~~~pvIaE--Gri~tPe~a~~a~~~GA~aV 170 (192)
T pfam04131 100 STFEEGLNA-HKLGVDIVGTTLSGYTGGSNPA-EPD----FQLVKTLSE-AGCFVIAE--GRYNTPELAKKAIEIGADAV 170 (192)
T ss_pred CCHHHHHHH-HHCCCCEEECCCCCCCCCCCCC-CCC----HHHHHHHHH-CCCCEEEE--CCCCCHHHHHHHHHCCCCEE
T ss_conf 999999999-9859999982325578999999-997----899999986-89939985--79899999999998399899
Q ss_pred EECCC
Q ss_conf 94588
Q gi|254781020|r 212 DIAGR 216 (337)
Q Consensus 212 ~v~~~ 216 (337)
+|++.
T Consensus 171 VVGsA 175 (192)
T pfam04131 171 TVGSA 175 (192)
T ss_pred EECCC
T ss_conf 98965
No 258
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=95.19 E-value=0.2 Score=26.80 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-H
Q ss_conf 307999999998739971785047866889999999769979994588886510012310234432324431063468-8
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-L 247 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~ 247 (337)
..+.+.++.+|...+...+...+ .+.+.+..++++|+|.|.++|..- ..+ .
T Consensus 174 ~~~~~ai~~~r~~~p~~kIeVEv---~tl~~~~ea~~~gaD~IlLDnmsp-------------------------~~l~~ 225 (284)
T PRK06096 174 QDWSGAINQLRRHAPEKKIVVEA---DTPKEAIAALRAQPDVLQLDKFSP-------------------------QQATE 225 (284)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEE---CCHHHHHHHHHCCCCEEEECCCCH-------------------------HHHHH
T ss_conf 57999999999758999889980---999999999857999999689899-------------------------99999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 9999985228987997298888899999998388852334799
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
++..+++...++.+-++|||. -.-+-+.-..|.|.+..|-++
T Consensus 226 av~~~~~~~~~~~lEaSGGI~-~~ni~~yA~tGVD~i~tsa~~ 267 (284)
T PRK06096 226 IAQIAPSLAPHCTLALTGGIN-LTTLKNYLDCGIRLFITSAPY 267 (284)
T ss_pred HHHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECCCC
T ss_conf 999987217977999989999-999999998099999828210
No 259
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=95.14 E-value=0.029 Score=31.70 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHCCC------CEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 8899999852289------8799729888889999999838885233479
Q gi|254781020|r 246 PLSLEMARPYCNE------AQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 246 ~~al~~~~~~~~~------v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
++.+..++++-++ ++++.=|||||..++.+.+-+|||.|-+|+-
T Consensus 177 PE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~VtGnv 226 (242)
T TIGR01768 177 PELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVVTGNV 226 (242)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 58999999874104788632578407647889999995345989998468
No 260
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.14 E-value=0.2 Score=26.70 Aligned_cols=100 Identities=16% Similarity=0.104 Sum_probs=61.5
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
...+|...+...++ ++.. .+.+.++.+.+.|+|.+.+|----+.. +.... ...|+ +.+....+
T Consensus 85 ~~~~r~~~~~~~ii-G~S~-h~~~e~~~a~~~g~DYi~~gpvf~T~t------K~~~~------~~~g~---~~l~~~~~ 147 (196)
T cd00564 85 VAEARALLGPDLII-GVST-HSLEEALRAEELGADYVGFGPVFPTPT------KPGAG------PPLGL---ELLREIAE 147 (196)
T ss_pred HHHHHHHHCCCCEE-EECC-CCHHHHHHHHHHCCCEEEECCCCCCCC------CCCCC------CCCCH---HHHHHHHH
T ss_conf 99999872889758-8247-889999998870999388646557898------88877------87788---99999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 228987997298888899999998388852334799998
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.-++||++-||| +..++-+.+-.||+.|.+.+.++..
T Consensus 148 -~~~~Pv~AiGGI-~~~ni~~~~~~G~~giAv~s~i~~~ 184 (196)
T cd00564 148 -LVEIPVVAIGGI-TPENAAEVLAAGADGVAVISAITGA 184 (196)
T ss_pred -HCCCCEEEECCC-CHHHHHHHHHCCCCEEEEHHHHHCC
T ss_conf -679998998589-9999999998099999972997779
No 261
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.10 E-value=0.21 Score=26.63 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHH--HCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 998999987765089857625320356652--068852430799999999873997178504786688999999976997
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQ--PNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIR 209 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad 209 (337)
.+.++...+. ..++|.+.-+++--..... ....++ .+.++.+++. +.|++. =|.+.+|+.++++.++||+
T Consensus 127 st~eea~~A~-~~G~D~V~TTLsGYT~~t~~~~~~~pD----~~lv~~l~~~-~~pvIa--EGri~tPe~a~~al~~GA~ 198 (222)
T PRK01130 127 STLEEGLAAA-KLGFDFIGTTLSGYTEYTEGETPEEPD----FALLKELLKA-GCPVIA--EGRINTPEQAKKALELGAH 198 (222)
T ss_pred CCHHHHHHHH-HCCCCEEECCCCCCCCCCCCCCCCCCC----HHHHHHHHHC-CCCEEE--ECCCCCHHHHHHHHHCCCC
T ss_conf 8899999999-849999972334567676778789986----9999999958-998997--4798999999999984998
Q ss_pred EEEECCC
Q ss_conf 9994588
Q gi|254781020|r 210 YFDIAGR 216 (337)
Q Consensus 210 ~i~v~~~ 216 (337)
+++|++.
T Consensus 199 aVvVGsA 205 (222)
T PRK01130 199 AVVVGSA 205 (222)
T ss_pred EEEECCC
T ss_conf 9998975
No 262
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.07 E-value=0.21 Score=26.58 Aligned_cols=89 Identities=16% Similarity=0.092 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 07999999998739971785047866889999999769979994588886510012310234432324431063468899
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
++.+.++.++...+.+.+...+ .+.+.++.++++|+|.|.++|..- +.+
T Consensus 175 ~i~~~v~~~~~~~~~~kIeVEv---~tl~q~~~a~~~gaDiI~LDnms~----------------------------~~l 223 (277)
T PRK05742 175 GIAQAVAAAHRIAPGKPVEVEV---ESLDELRQALAAGADIVMLDELSL----------------------------DDM 223 (277)
T ss_pred CHHHHHHHHHHHCCCCCEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------HHH
T ss_conf 7999999999848997269996---779999998746998999869999----------------------------999
Q ss_pred HHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 999-85228987997298888899999998388852334799
Q gi|254781020|r 250 EMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 250 ~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
..+ +-...++.+-++|||. ..-+.+.-..|.|.+-+|...
T Consensus 224 k~av~~~~~~~~iEaSGGI~-~~ni~~yA~tGvD~IS~galt 264 (277)
T PRK05742 224 REAVRLTAGRAKLEASGGIN-ETTLRVIAETGVDYISIGAMT 264 (277)
T ss_pred HHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHH
T ss_conf 99999747974899988999-999999997499999888010
No 263
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=95.06 E-value=0.22 Score=26.57 Aligned_cols=95 Identities=14% Similarity=0.086 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHCCCCEEE-EECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH
Q ss_conf 430799999999873997178-5047866889999999769979994588886510012310234432324431063468
Q gi|254781020|r 168 FADLSSKIALLSSAMDVPLLL-KEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP 246 (337)
Q Consensus 168 ~~~~~~~i~~l~~~~~~pii~-k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~ 246 (337)
.-++.+.++.+|...+....+ ..+ .+.|++..|+++|||.|-++|...-. + -
T Consensus 169 ~Gs~~~Av~~aR~~~~~~~kiEVEV---enlE~a~eA~~AGADiImLDNm~p~~----------------------~--~ 221 (276)
T TIGR00078 169 AGSIEKAVKRARAALPFAKKIEVEV---ENLEEAEEAAEAGADIIMLDNMKPEE----------------------I--K 221 (276)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEECCCCCHHH----------------------H--H
T ss_conf 6898999999998489980799862---89899999997099599806989479----------------------9--9
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 89999985228987997298888899999998388852334799
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
.++...+.-...+-+=++||| |-..+-.+-..|=|++-+|...
T Consensus 222 ~av~~~~~~~p~~~~EaSGGi-tl~n~~~ya~~gVD~IS~G~lT 264 (276)
T TIGR00078 222 EAVELLKGRNPNVLVEASGGI-TLDNIEEYAETGVDVISSGALT 264 (276)
T ss_pred HHHHHHHHCCCEEEEEEECCC-CHHHHHHHHHCCCCEEECCCHH
T ss_conf 999999702990899983699-8789999840897588327411
No 264
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.04 E-value=0.13 Score=27.94 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
..+...++. +.++|.+.+.. .. ....+.... ...+.++|.++....|++.- | +.+.+.+..++++|+|+|-
T Consensus 120 s~~~A~~A~-e~GADYv~fG~-~~-~~~k~~a~~---~~l~~l~~~~~~~~iP~VAI--G-GIt~~n~~~v~~aGad~vA 190 (221)
T PRK06512 120 DRHGAMEVG-ELQPDYLFFGK-LG-ADNKPEAHP---RNLSLAEWWAEMIEIPCIVQ--A-GSDLASIVEVAETGAEFVA 190 (221)
T ss_pred CHHHHHHHH-HCCCCEEEECC-CC-CCCCCCCCC---CCHHHHHHHHHCCCCCEEEE--C-CCCHHHHHHHHHHCCCEEE
T ss_conf 899999999-73998576578-78-888998875---42589999997479998998--2-7899999999981998998
Q ss_pred ECC
Q ss_conf 458
Q gi|254781020|r 213 IAG 215 (337)
Q Consensus 213 v~~ 215 (337)
|..
T Consensus 191 Vis 193 (221)
T PRK06512 191 LGR 193 (221)
T ss_pred EHH
T ss_conf 859
No 265
>TIGR01919 hisA-trpF bifunctional HisA/TrpF protein; InterPro: IPR010188 This entry represents a bifunctional protein possessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities . Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC Gram-positive). The enzyme is closely related to the monofunctional HisA proteins and in Actinobacteria, the classical monofunctional TrpF is generally absent.; GO: 0003949 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity, 0004640 phosphoribosylanthranilate isomerase activity, 0000105 histidine biosynthetic process, 0000162 tryptophan biosynthetic process, 0005737 cytoplasm.
Probab=95.01 E-value=0.22 Score=26.49 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH---HHHHCCCEEHHHHHHH
Q ss_conf 46889999985228987997298888899999---9983888523347999
Q gi|254781020|r 244 PTPLSLEMARPYCNEAQFIASGGLRNGVDILK---SIILGASLGGLASPFL 291 (337)
Q Consensus 244 ~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k---AlalGAdaV~iGr~~l 291 (337)
|-++.|.++++ +.+.||+++|||..=.|+.. .---|-|.+-+|.++.
T Consensus 183 PN~~LL~eVA~-~TDA~v~ASGGiS~LdDl~~i~~l~~~Gvds~I~GKaLY 232 (246)
T TIGR01919 183 PNVELLAEVAE-RTDAPVVASGGISKLDDLRAIAKLAEEGVDSAIVGKALY 232 (246)
T ss_pred CCHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 52899999886-228847871775618899999999755886576202555
No 266
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.91 E-value=0.15 Score=27.58 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899999997699799
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
.+.....+..+..+...+.++ +...+...... -.+.++.+.+.++.|++. .|.+.+.++.+.+.+.|++++
T Consensus 148 ~~~~d~~~~~~~~g~~~il~T-dI~rDGtl~G~------n~el~~~i~~~~~~pvIa--SGGv~sl~Di~~L~~~gv~Gv 218 (234)
T PRK13587 148 LNLFSFVRQLSDIPLGGIIYT-DIAKDGKMSGP------NFELTGQLVKATTIPVIA--SGGIRHQQDIQRLASLNVHAA 218 (234)
T ss_pred CCHHHHHHHHHHCCCCEEEEE-CCCCCCCCCCC------CHHHHHHHHHHCCCCEEE--ECCCCCHHHHHHHHHCCCCEE
T ss_conf 679999999974398789984-02665745579------999999999767999999--899899999999998899899
Q ss_pred EECC
Q ss_conf 9458
Q gi|254781020|r 212 DIAG 215 (337)
Q Consensus 212 ~v~~ 215 (337)
+++-
T Consensus 219 IvGk 222 (234)
T PRK13587 219 IIGK 222 (234)
T ss_pred EEEE
T ss_conf 9997
No 267
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.87 E-value=0.23 Score=26.36 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=58.9
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEE----CCCCCCHHHHHHHHHC-CCC
Q ss_conf 99987765089857625320356652068852430799999999873-99717850----4786688999999976-997
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKE----VGCGLSSMDIELGLKS-GIR 209 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~----v~~~~~~~~~~~a~~a-Gad 209 (337)
...+..+..+++++.+..+.-. ...-.....+.+.+.+.. +.|+++-- .+...+++...++.+. ++-
T Consensus 87 ~~a~~a~~~Gad~v~v~~P~y~-------~~~~~~~~~~~~~i~~~~~~~piiiYn~P~~tg~~l~~~~l~~L~~~~~vv 159 (288)
T cd00954 87 ELAKHAEELGYDAISAITPFYY-------KFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELFEIPNVI 159 (288)
T ss_pred HHHHHHHHCCCCEEEECCCCCC-------CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEE
T ss_conf 9999998649786773799887-------999799999999999857799654321765237689999999996368978
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 99945888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 210 YFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 210 ~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
+|.-+. + . +.....+. +...+++.|+ .| ...-.+-++++||+....+.+
T Consensus 160 giK~s~--~--------------d---------~~~~~~~~--~~~~~~~~v~-~G---~d~~~~~~~~~Ga~G~i~~~~ 208 (288)
T cd00954 160 GVKFTA--T--------------D---------LYDLERIR--AASPEDKLVL-NG---FDEMLLSALALGADGAIGSTY 208 (288)
T ss_pred EEEECC--C--------------C---------HHHHHHHH--HHCCCCCEEE-CC---CHHHHHHHHHCCCCEEEECHH
T ss_conf 999787--9--------------9---------99999999--9769982461-69---579999999869989995767
No 268
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=94.84 E-value=0.12 Score=28.05 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHC-CCCEEEEC-CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH--H--HHCCCC--EEEECCC
Q ss_conf 688999999976-99799945-88886510012310234432324431063468899999--8--522898--7997298
Q gi|254781020|r 195 LSSMDIELGLKS-GIRYFDIA-GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA--R--PYCNEA--QFIASGG 266 (337)
Q Consensus 195 ~~~~~~~~a~~a-Gad~i~v~-~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~--~--~~~~~v--~IiadGG 266 (337)
.+.|.++.|.+. =||=|+|- =.|| |+|..+...+ +|.+.+|.+- + ....+| -|=+.||
T Consensus 169 it~eeAeLA~~vPvAdDi~vEADSGG----------HTD~r~~~vL----LP~i~rLRD~~~~~~gY~~~irvRvGaAGG 234 (449)
T TIGR02814 169 ITEEEAELAAEVPVADDICVEADSGG----------HTDNRPLVVL----LPAIIRLRDTLMRKYGYRKPIRVRVGAAGG 234 (449)
T ss_pred CCHHHHHHHHHCCCCCCEEEECCCCC----------CCCCHHHHHH----HHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 68789999841773036037526833----------9762288999----899999999999982789874378735777
Q ss_pred CCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 8888999999983888523347
Q gi|254781020|r 267 LRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 267 Ir~g~Dv~kAlalGAdaV~iGr 288 (337)
|=|+.=|+-|.+||||+|-=||
T Consensus 235 iGtPeAvaAAF~LGA~FiVTGS 256 (449)
T TIGR02814 235 IGTPEAVAAAFMLGADFIVTGS 256 (449)
T ss_pred CCCHHHHHHHHHCCCCEEECCC
T ss_conf 7727999999733742574186
No 269
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.81 E-value=0.25 Score=26.17 Aligned_cols=93 Identities=13% Similarity=-0.006 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 07999999998739971785047866889999999769979994588886510012310234432324431063468899
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
++.+.++.+|...+...+...+ .+.+.++.++++|+|.|.++|..- +. ...++
T Consensus 184 ~i~~ai~~~r~~~~~~kIeVEv---~sl~q~~ea~~~gaDiImLDNms~------e~------------------~~~av 236 (288)
T PRK07896 184 SVVAALRAVRAAAPDLPCEVEV---DSLEQLDEVLAEGAELILLDNFPV------WQ------------------TQEAV 236 (288)
T ss_pred CHHHHHHHHHHHCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH------HH------------------HHHHH
T ss_conf 6999999999858996199997---979999998746999999779999------99------------------99999
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 99985228987997298888899999998388852334799
Q gi|254781020|r 250 EMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 250 ~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
..++....++.+-++|||. -..+.+.-..|.|.+-+|...
T Consensus 237 ~~~~~~~~~v~lEaSGgI~-~~ni~~yA~tGVD~IS~G~LT 276 (288)
T PRK07896 237 QRRDARAPTVLLESSGGLT-LDTAAAYAATGVDYLAVGALT 276 (288)
T ss_pred HHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHHH
T ss_conf 9983769874899988999-999999996599999878532
No 270
>KOG4201 consensus
Probab=94.68 E-value=0.2 Score=26.71 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=66.3
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC
Q ss_conf 99987399717850478668899999997699799945888865100123102344323244310634688999998522
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC 256 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~ 256 (337)
.+.+..+...++ .+.+.+...++.+.|+..|-|-|+.-.++ .+-+.+..-|++. +.
T Consensus 180 k~~K~L~me~LV----EVn~~eEm~raleiGakvvGvNNRnL~sF------------------eVDlstTskL~E~--i~ 235 (289)
T KOG4201 180 KISKDLGMEPLV----EVNDEEEMQRALEIGAKVVGVNNRNLHSF------------------EVDLSTTSKLLEG--IP 235 (289)
T ss_pred HHHHHCCCCCEE----EECCHHHHHHHHHHCCEEEEECCCCCCEE------------------EECHHHHHHHHHH--CC
T ss_conf 998871875003----30659999899973757874347764136------------------6510257889850--86
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH
Q ss_conf 89879972988888999999983888523347999984
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA 294 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~ 294 (337)
.++-+++-+||.|..|+++.=..|-.+|.+|-.+++..
T Consensus 236 kDvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~s 273 (289)
T KOG4201 236 KDVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQS 273 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHCC
T ss_conf 32698741578887889999874861898527777245
No 271
>KOG1606 consensus
Probab=94.55 E-value=0.24 Score=26.30 Aligned_cols=143 Identities=16% Similarity=0.206 Sum_probs=77.4
Q ss_pred HHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHC---CCCCCC-----------CHHHHHCCCC
Q ss_conf 98739971785047866889999999769979994588886510012310---234432-----------3244310634
Q gi|254781020|r 179 SSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHR---DLESDI-----------GIVFQDWGIP 244 (337)
Q Consensus 179 ~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r---~~~~~~-----------~~~~~~~gi~ 244 (337)
+..++.|++. |. .+...+.+-+.-|+.-|..-|-.|++-. .+.-| +..+.+ .+.......
T Consensus 121 KhnFkvPFvC---G~-rdlGEALRRI~EGAAMIRtkGeagTG~v-~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~a- 194 (296)
T KOG1606 121 KHNFKVPFVC---GC-RDLGEALRRIREGAAMIRTKGEAGTGDV-SEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAA- 194 (296)
T ss_pred HHCCCCCEEE---CC-CCHHHHHHHHHHCHHHHEECCCCCCCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC-
T ss_conf 3067675354---25-6389999987503244020464677749-9999999998899999872887899999998647-
Q ss_pred HHHHHHHHHHHCCCCEE--EECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH------CCCHHHHH-----HHHHHHHHH
Q ss_conf 68899999852289879--972988888999999983888523347999984------14668999-----999999999
Q gi|254781020|r 245 TPLSLEMARPYCNEAQF--IASGGLRNGVDILKSIILGASLGGLASPFLKPA------MDSSDAVV-----AAIESLRKE 311 (337)
Q Consensus 245 ~~~al~~~~~~~~~v~I--iadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~------~~G~~gv~-----~~l~~l~~e 311 (337)
+...+..+.+. .++|| .+.||+.|+.|++-.+-||.|.|++|+...... -.=.+.++ ..+..+..+
T Consensus 195 P~dLv~~t~q~-GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~aiVqAvthy~dp~~L~evS~~ 273 (296)
T KOG1606 195 PYDLVKQTKQL-GRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSG 273 (296)
T ss_pred CHHHHHHHHHC-CCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCC
T ss_conf 08999999970-87745874256758816799999808984886554236898899999999998705888999987415
Q ss_pred HHHHHHHCCCCCHHHHH
Q ss_conf 99999980898578961
Q gi|254781020|r 312 FIVSMFLLGTKRVQELY 328 (337)
Q Consensus 312 l~~~m~~~G~~~i~el~ 328 (337)
|-..|.-....++++-+
T Consensus 274 Lg~aM~g~~i~~~~~~~ 290 (296)
T KOG1606 274 LGEAMVGISIQSIKEAR 290 (296)
T ss_pred HHHHHHCCCCCCHHHHH
T ss_conf 78775255445024442
No 272
>PRK08185 hypothetical protein; Provisional
Probab=94.50 E-value=0.3 Score=25.72 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=70.4
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCC--HHHHHHHHHHHCCCCEEEECCCC-
Q ss_conf 668899999-997699799945--888865100123102344323244310634--68899999852289879972988-
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIP--TPLSLEMARPYCNEAQFIASGGL- 267 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~--~~~al~~~~~~~~~v~IiadGGI- 267 (337)
.++|+.++. ..+.|+|.+-++ |..|.- ...+-| ..+.|.++++. .++|+..=||=
T Consensus 148 ~T~peea~~Fv~~TgvD~LAvaiGn~HG~Y------------------k~~~~p~l~~~~l~~I~~~-~~vPLVLHGgSG 208 (283)
T PRK08185 148 YTDPEQAEDFVSRTGVDTLAVAIGTAHGIY------------------PKDKKPKLQMDILKEINER-VDIPLVLHGGSA 208 (283)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCCC------------------CCCCCCCCCHHHHHHHHHH-CCCCEEEECCCC
T ss_conf 489999999999879997863325545555------------------7889842378999999986-499989758999
Q ss_pred CCHHHHHHHHHHCCCEEHHHHHHHHHHC--------CCH------HHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 8889999999838885233479999841--------466------89999999999999999998089857
Q gi|254781020|r 268 RNGVDILKSIILGASLGGLASPFLKPAM--------DSS------DAVVAAIESLRKEFIVSMFLLGTKRV 324 (337)
Q Consensus 268 r~g~Dv~kAlalGAdaV~iGr~~l~~~~--------~G~------~gv~~~l~~l~~el~~~m~~~G~~~i 324 (337)
-.-.|+-|++.+|-.=|-++|-+.++.. +.+ .-+....+.+++-.+..|.++|+.+=
T Consensus 209 ~~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~p~~~d~~~~~~~~~~a~~~~v~~ki~~fGS~gK 279 (283)
T PRK08185 209 NPDAEIAESVTLGVGKINISSDMKYAFFQKVREILVANPSWWEPNVIYPDAINAAKEVVRHKMKLFNSTGK 279 (283)
T ss_pred CCHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999998693799848679999999999999859775787999899999999999999999699878
No 273
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.02 E-value=0.38 Score=25.12 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=91.4
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHH--------HHHHHHHHHHHHCCCCEE
Q ss_conf 012322027521236799899998776508985762532035665206885243--------079999999987399717
Q gi|254781020|r 116 HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFA--------DLSSKIALLSSAMDVPLL 187 (337)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~l~~~~~~pii 187 (337)
+.++++.+... ++-.+++.........+..++.- + |..... +..|+ +....++.++.....-++
T Consensus 81 ~tPViaGv~~t--DP~~~~~~~L~~l~~~GfsGV~N-f--PTvgli---dG~fR~~LEetGmgy~~EVEmIr~A~~~dl~ 152 (268)
T pfam09370 81 HTPVLAGVCGT--DPFRDMDRFLDELKEMGFAGVQN-F--PTVGLI---DGEFRQNLEETGMGYDLEVEMIRLAHEKGLL 152 (268)
T ss_pred CCCEEEECCCC--CCCCCHHHHHHHHHHHCCCCEEE-C--CCEEEE---CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88758761588--97452999999999719774443-8--822033---5188877888088679999999999977983
Q ss_pred EEECCCCCCHHHHHHHHHCCCCEEEECC---CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH-HHHCCCCEEEE
Q ss_conf 8504786688999999976997999458---8886510012310234432324431063468899999-85228987997
Q gi|254781020|r 188 LKEVGCGLSSMDIELGLKSGIRYFDIAG---RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA-RPYCNEAQFIA 263 (337)
Q Consensus 188 ~k~v~~~~~~~~~~~a~~aGad~i~v~~---~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~-~~~~~~v~Iia 263 (337)
- ++.+.++++++...++|||.|+.-- .||...++. ....+-.+..+..+.++ +++++++-++.
T Consensus 153 T--~~yvf~~e~a~~Ma~AGaDiIv~H~GlT~gG~iG~~~-----------a~sl~~a~~~~~~i~~aa~~v~~diIvLc 219 (268)
T pfam09370 153 T--TPYVFNVEEARAMAEAGADIIVAHMGLTTGGTIGADT-----------ALSLDDCVELINAIARAARSVNPDVIVLC 219 (268)
T ss_pred C--CCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 3--3132689999999974998999767767776746777-----------67899999999999999998599869995
Q ss_pred CCC-CCCHHHHHHHHHHCC--CEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 298-888899999998388--852334799998414668999999999999999
Q gi|254781020|r 264 SGG-LRNGVDILKSIILGA--SLGGLASPFLKPAMDSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 264 dGG-Ir~g~Dv~kAlalGA--daV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~ 314 (337)
.|| |.++.|+-..+..-. +...=++.+=.. -+++.+.....++|.
T Consensus 220 hGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~ERl------PvE~ai~~~~~~FK~ 267 (268)
T pfam09370 220 HGGPIATPEDAQYVLDRTPGCHGFYGASSMERL------PTERAITEQTSAFKS 267 (268)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHH------HHHHHHHHHHHHHHC
T ss_conf 178889989999999739777667633036664------689999999998624
No 274
>PRK13133 consensus
Probab=93.82 E-value=0.42 Score=24.89 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=86.6
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 12367998999987765089857625320356652068852430799999999873997178504786688999999976
Q gi|254781020|r 127 QLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKS 206 (337)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~a 206 (337)
+.-...+.+...+.....+.+++.+ .+.|.+. .+.+....+..+...+. ++.-.++.+..+...+.
T Consensus 106 N~i~~yG~e~F~~~~~~aGvdGlIi-pDLP~eE------------~~~~~~~~~~~gl~~I~-lvaPtt~~eRi~~i~~~ 171 (267)
T PRK13133 106 NPLIAYGGDCFLADAVKAGVDGLLI-PDLPPEE------------AIDFLERAKNFGLTVVF-LISPVTPPERIEFIDSL 171 (267)
T ss_pred HHHHHHCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHC
T ss_conf 7999847799999999869878877-8999688------------89999999846986024-42899999999999842
Q ss_pred CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC-HH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 99799945888865100123102344323244310634-68-89999985228987997298888899999998388852
Q gi|254781020|r 207 GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIP-TP-LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 207 Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~-~~-~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
.-.+|..-.+-|.|+... .. ..+++ .+ +-+..+++. .+.||..-=||++..|+-+.... ||.|
T Consensus 172 s~GFiY~vs~~GvTG~~~-----~~--------~~~~~~~~~~~i~~ik~~-t~~Pv~vGFGI~~~e~~~~i~~~-ADGv 236 (267)
T PRK13133 172 STDFSYCLAVNATTGTAK-----LS--------DAGTEAAVDEYLKRVRQH-TKKKFVVGFGIKDRERVEHMWEL-ADGA 236 (267)
T ss_pred CCCCEEEEEEECCCCCCC-----CC--------CCCHHHHHHHHHHHHHHC-CCCCEEEECCCCCHHHHHHHHHH-CCEE
T ss_conf 789579998001346775-----55--------542678999999999971-89987996687999999999822-9999
Q ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Q ss_conf 3347999984146--689999999999999
Q gi|254781020|r 285 GLASPFLKPAMDS--SDAVVAAIESLRKEF 312 (337)
Q Consensus 285 ~iGr~~l~~~~~G--~~gv~~~l~~l~~el 312 (337)
-+|++++..+.++ ++-..+.+..+..+|
T Consensus 237 IVGSaiV~~i~~~~~~~e~~~~~~~f~~~l 266 (267)
T PRK13133 237 VVGTALLQHIAGAGTPQETARLAGEFWQSL 266 (267)
T ss_pred EECHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 987899999983799689999999999861
No 275
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.81 E-value=0.42 Score=24.88 Aligned_cols=99 Identities=14% Similarity=0.190 Sum_probs=59.1
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
++..|...+...++ ++. ..+.+.+..+.+.|+|.|-++---.+.. +. +. ...| ++.+..+.+
T Consensus 228 i~~aR~llG~~~iI-G~S-~h~~ee~~~A~~~gaDYig~Gpvf~T~T------K~-~~------~p~G---l~~l~~~~~ 289 (345)
T PRK02615 228 LAVARQLLGPEKII-GRS-TTNPEELAKAIAEGADYIGVGPVFPTPT------KP-GK------APAG---LEYLKYARK 289 (345)
T ss_pred HHHHHHHCCCCCEE-EEC-CCCHHHHHHHHHCCCCEEEECCEEECCC------CC-CC------CCCC---HHHHHHHHH
T ss_conf 99999873999189-961-7999999999863999799887742588------88-88------8789---999999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 228987997298888899999998388852334799998
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
. -++|+++-|||. ...+-..+..||+.|.|-++++.+
T Consensus 290 ~-~~iPvvAIGGI~-~~N~~~v~~aGa~gvAVisAI~~A 326 (345)
T PRK02615 290 E-ANIPWFAIGGID-KSNISEVLQAGADRVAVVRAIMNA 326 (345)
T ss_pred H-CCCCEEEECCCC-HHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 3-799999999969-999999998599999982285579
No 276
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit; InterPro: IPR004651 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis. This family describes the histidine biosynthesis protein, HisF. ; GO: 0000107 imidazoleglycerol-phosphate synthase activity, 0000105 histidine biosynthetic process, 0005737 cytoplasm, 0009382 imidazoleglycerol-phosphate synthase complex.
Probab=93.74 E-value=0.23 Score=26.45 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCEEEECCCCCCHHHHH-----------HHHHHCCCEEHHHHHHHHH
Q ss_conf 898799729888889999-----------9998388852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDIL-----------KSIILGASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~-----------kAlalGAdaV~iGr~~l~~ 293 (337)
--||+-.-|||++-.|+- +.|..|||=|-|.|+.++.
T Consensus 88 VfiPlTVGGGI~~~eD~~GtkiPalevas~~L~aGADKvSiNTaAv~~ 135 (312)
T TIGR00735 88 VFIPLTVGGGIKSIEDVKGTKIPALEVASKLLRAGADKVSINTAAVKN 135 (312)
T ss_pred CCCCEEECCCCCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCHHHHC
T ss_conf 452222168888432045644427899999985489846328467508
No 277
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=93.67 E-value=0.21 Score=26.61 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 0799999999873-9971785047866889999999769979994588
Q gi|254781020|r 170 DLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 170 ~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
.-.+.++.+++.. +.|+++ -|.+.+++.++.+.++|||.|+++|.
T Consensus 161 v~~e~V~~vk~~l~~~~Liv--GGGIrs~e~a~~~~~AgAD~IVvGn~ 206 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIV--GGGIRSGEQAKEMAEAGADTIVVGNI 206 (219)
T ss_pred CCHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 99999999998467970999--28979999999999869999998872
No 278
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.59 E-value=0.46 Score=24.65 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=106.2
Q ss_pred CCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH-HHHHHHHHHCCCHHHHHCCCCCCCCCCCCH
Q ss_conf 5686850126633430002569999999980990660520221128668-889999986640123220275212367998
Q gi|254781020|r 56 SFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA-IKSFELRQYAPHTVLISNLGAVQLNYDFGV 134 (337)
Q Consensus 56 ~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (337)
+.|.++=+.+... .+.++.-+-.-....-++ +.++.+...++ .....+++..|+..+++-+.. .+.+-
T Consensus 2 ~~P~LQvALD~~~------l~~Al~ia~~~~~~vdii-EvGtpLi~~~G~~~V~~lr~~~p~k~I~aDlK~----~D~g~ 70 (216)
T PRK13306 2 SKPLLQVALDNQD------LDSALEDAKKVAEEVDII-EVGTILCLAEGMKAVRVLRALYPDKIIVADTKI----ADAGK 70 (216)
T ss_pred CCCEEEEEECCCC------HHHHHHHHHHHHCCCCEE-EECCHHHHHHCHHHHHHHHHHCCCCEEEEEEEE----CCCCH
T ss_conf 9973899867899------999999999723228999-968599998589999999987899979997532----36538
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99998776508985762532035665206885243079999999987399717850478668899999997699799945
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
-..+... ..++|.+-++--.+..+ .+......+.++..+.+-+.+ ..+.+.++...+.|++.+++
T Consensus 71 ~ea~~a~-~aGAd~vtV~g~a~~~T------------i~~~~~~A~~~g~~v~vdl~~-~~~~e~a~~~~~lgv~~~i~- 135 (216)
T PRK13306 71 ILAKMAF-EAGADWVTVICAAHIPT------------IKAALKVAKEFNGEIQIELYG-NWTWEQAQQWRDAGIQQVIY- 135 (216)
T ss_pred HHHHHHH-HCCCCEEEEECCCCHHH------------HHHHHHHHHHHCCEEEEEEEC-CCCHHHHHHHHHCCCCEEEE-
T ss_conf 9999999-72898899956689799------------999999999809836999737-87788899999769987887-
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8888651001231023443232443106346889999985228-987997298888899999998388852334799998
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN-EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
|-+. +. +..+ . .-....+..++.+.. .+.|-..|||+ ..++-++..+|++.|-+||+.-.+
T Consensus 136 -H~~~---D~----~~~g--------~-~~~~~~~~~ik~l~~~~~~vaVaGGI~-~~~~~~~~~~~~~ivIVGraIt~a 197 (216)
T PRK13306 136 -HRSR---DA----ELAG--------V-AWGEKDLNKVKKLSDMGFKVSVTGGIV-PEDLKLFKGIPIKTFIAGRAIRGA 197 (216)
T ss_pred -ECCH---HH----HHCC--------C-CCCHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHCCCCCEEEECCCCCCC
T ss_conf -6032---24----4246--------7-888778999999763698299859989-899999862799899988523589
Q ss_pred HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 414668999999999999999
Q gi|254781020|r 294 AMDSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 294 ~~~G~~gv~~~l~~l~~el~~ 314 (337)
..+ ...-+.+++|++.
T Consensus 198 --~dP---~~aA~~i~~~I~~ 213 (216)
T PRK13306 198 --KDP---AEAARAFKDEIAK 213 (216)
T ss_pred --CCH---HHHHHHHHHHHHH
T ss_conf --999---9999999999998
No 279
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.57 E-value=0.46 Score=24.63 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 079999999987399-7178504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 170 DLSSKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
++.+.++.++...+. +.+...+ .+.+.++.+.++|+|.|.++|..- +.
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv---~~l~q~~~a~~~g~DiIlLDNms~----------------------------~~ 230 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEV---ESLAAAEEAAAAGVDIIMLDNMSL----------------------------EQ 230 (290)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------HH
T ss_conf 79999999998589876699985---689999999866999999879899----------------------------99
Q ss_pred HHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 9999-852289879972988888999999983888523347999
Q gi|254781020|r 249 LEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 249 l~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+.++ +-+..++.+-++||| +-..+-+.-..|.|++-+|....
T Consensus 231 i~~av~~i~~~~~lEaSGgI-~~~ni~~yA~tGVD~IS~g~Lth 273 (290)
T PRK06559 231 IEQAITLIAGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHHHHHHCCCEEEEEECCC-CHHHHHHHHHCCCCEEECCHHCC
T ss_conf 99999985796799997899-89999999973999998882206
No 280
>pfam04309 G3P_antiterm Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.
Probab=93.51 E-value=0.47 Score=24.57 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 8999998522898799729888889999999838885233479
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
..+....+ .-++|||+-|=|++-.||..||..||++|.-...
T Consensus 129 ~~i~~i~~-~~~~PiIAGGLI~~~edv~~aL~aGA~aVSTS~~ 170 (174)
T pfam04309 129 KVIQEITE-RTNIPIIAGGLIRTEEEVREALKAGAVAVSTSNK 170 (174)
T ss_pred HHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCH
T ss_conf 99999997-4799999767838899999999849969987884
No 281
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=93.49 E-value=0.48 Score=24.55 Aligned_cols=149 Identities=14% Similarity=0.021 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHHHCCCCEEE
Q ss_conf 8999987765089857625320356652068852430799999999873997178504786-688999999976997999
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCG-LSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~-~~~~~~~~a~~aGad~i~ 212 (337)
...+.+. ...+++.+.+|..... ......++++++.--.+-+. -|. +..+......+ -+|.|.
T Consensus 70 ~~~i~~~-~~~gad~It~H~Ea~~-----------~~~~~~i~~Ik~~g~k~GlA---lnP~Tpi~~i~~~l~-~vD~VL 133 (227)
T PRK09722 70 QDYIAQL-ADAGADFITLHPETIN-----------GQAFRLIDEIRRAGMKVGLV---LNPETPVEAIKYYIH-LADKVT 133 (227)
T ss_pred HHHHHHH-HHCCCCEEEECHHHCC-----------CCHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHH-HCCEEE
T ss_conf 8889999-8549989995656505-----------65999999999869972233---389998668876674-379899
Q ss_pred EC----CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 45----888865100123102344323244310634688999998-5228987997298888899999998388852334
Q gi|254781020|r 213 IA----GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 213 v~----~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
+= |.+|..+.. ..+..+..+.... +-..++.|..||||... -+-+...+|||.+-.|
T Consensus 134 vMsV~PGf~GQ~Fi~-----------------~~l~KI~~lr~~~~~~~~~~~I~VDGGI~~~-~i~~~~~aGAd~~V~G 195 (227)
T PRK09722 134 VMTVDPGFAGQPFIP-----------------EMLDKIAELKAWREREGLEYEIEVDGSCNQK-TYEKLMAAGADVFIVG 195 (227)
T ss_pred EEEECCCCCCCCCCH-----------------HHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHCCCCEEEEC
T ss_conf 998889998765668-----------------8999999999999825998269998988899-9999998699999977
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 79999841466899999999999999999980
Q gi|254781020|r 288 SPFLKPAMDSSDAVVAAIESLRKEFIVSMFLL 319 (337)
Q Consensus 288 r~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~ 319 (337)
|+.++. ..+.+++.++.|+.+++....+.
T Consensus 196 ssaiF~---~~~~i~~~~~~l~~~~~~~~~~~ 224 (227)
T PRK09722 196 TSGLFN---HAENIDEAWDIMTAQILAATSEV 224 (227)
T ss_pred CHHHCC---CCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 489748---99999999999999999986321
No 282
>PRK06852 aldolase; Validated
Probab=93.26 E-value=0.52 Score=24.33 Aligned_cols=131 Identities=14% Similarity=0.068 Sum_probs=74.4
Q ss_pred CHHHHHHHHH--HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHH---HHHHCCCCEEEE------ECCCCCCH----
Q ss_conf 9899998776--50898576253203566520688524307999999---998739971785------04786688----
Q gi|254781020|r 133 GVQKAHQAVH--VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIAL---LSSAMDVPLLLK------EVGCGLSS---- 197 (337)
Q Consensus 133 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~pii~k------~v~~~~~~---- 197 (337)
.++...+..+ .+++.++..++...-+ ......+.+.+ -...++.|+++= .+.+-.++
T Consensus 120 sv~~a~~~~~~~~LGa~aVG~TIY~GSe--------~e~~ml~e~~~i~~eA~~~Gl~~VlW~YpRG~~ik~e~d~~~iA 191 (303)
T PRK06852 120 DVDQVVEFKKNSGLNILGVGYTIYLGSE--------YEAEMLSEAAQIIYEAHKHGLVAVLWIYPRGKAVKDEKDPHLIA 191 (303)
T ss_pred CHHHHHHHHHHCCCCCEEEEEEEECCCH--------HHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHH
T ss_conf 7999986523115886599999857974--------06999999999999999769908999951587678987678999
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHH-----
Q ss_conf 999999976997999458888651001231023443232443106346889999985228987997298888899-----
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVD----- 272 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~D----- 272 (337)
..+..+.+.|||.|.+--.--. +--..+.+.++.....+++||..||=+.+.+
T Consensus 192 ~aA~~aaeLGADIIKvk~P~~~----------------------~~~~~e~f~~~v~~aGr~~VI~SGG~~~~~~~~l~~ 249 (303)
T PRK06852 192 GAAGVAACLGADFVKVNYPKKE----------------------GANPAELFKEAVMAAGRTKVVCAGGSSTDAEEFLKQ 249 (303)
T ss_pred HHHHHHHHHCCCEEEECCCCCC----------------------CCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHH
T ss_conf 9999999867998982487667----------------------899989999999808995599758998987999999
Q ss_pred HHHHHH-HCCCEEHHHHHHHHH
Q ss_conf 999998-388852334799998
Q gi|254781020|r 273 ILKSII-LGASLGGLASPFLKP 293 (337)
Q Consensus 273 v~kAla-lGAdaV~iGr~~l~~ 293 (337)
+.+++. .|+..+-+||-.++.
T Consensus 250 v~~ai~~gG~~G~iiGRN~FQr 271 (303)
T PRK06852 250 LYEQIHISGASGNATGRNIHQK 271 (303)
T ss_pred HHHHHHHCCCCEEEECCCCCCC
T ss_conf 9999997299557443221368
No 283
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=93.25 E-value=0.3 Score=25.72 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=36.7
Q ss_pred HHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 99999999873-9971785047866889999999769979994588
Q gi|254781020|r 172 SSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 172 ~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
.+.++.+++.. +.|+++ -|.+.+++.++.+.++|||.|+++|.
T Consensus 173 ~e~V~~v~~~l~~~~Liv--GGGIrs~e~a~~~~~aGAD~IVvGn~ 216 (229)
T PRK04169 173 PEMVKAVKKALTDTPLIV--GGGIRSPEQAREMAKAGADTIVVGTI 216 (229)
T ss_pred HHHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHCCCCEEEECCC
T ss_conf 999999997378987899--28969999999999769999998862
No 284
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=93.16 E-value=0.54 Score=24.24 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=60.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHH-HHHH
Q ss_conf 999999998739971785047866889999999769979994588886510012310234432324431063468-8999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTP-LSLE 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~-~al~ 250 (337)
...++.++...+.+.+...+ .+.+.++.++++|+|.|.++|..- + .+ .++.
T Consensus 171 ~~~v~~~k~~~~~~kIeVEv---~~~~q~~~a~~~g~d~I~LDn~s~------~-------------------~ik~~v~ 222 (272)
T cd01573 171 LKALARLRATAPEKKIVVEV---DSLEEALAAAEAGADILQLDKFSP------E-------------------ELAELVP 222 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH------H-------------------HHHHHHH
T ss_conf 99999998629997089983---999999999846999999779999------9-------------------9999999
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 99852289879972988888999999983888523347999
Q gi|254781020|r 251 MARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 251 ~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
..+....++.+-++|||- -.-+-+.-..|.|++ ++++..
T Consensus 223 ~~~~~~~~v~ieaSGgI~-~~ni~~yA~tGvD~I-s~~a~~ 261 (272)
T cd01573 223 KLRSLAPPVLLAAAGGIN-IENAAAYAAAGADIL-VTSAPY 261 (272)
T ss_pred HHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEE-ECCHHH
T ss_conf 974448876999989999-999999997399999-808432
No 285
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=93.15 E-value=0.54 Score=24.23 Aligned_cols=143 Identities=18% Similarity=0.217 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--------------
Q ss_conf 989999877650898576253203566520688524307999999998739971785047866889--------------
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSM-------------- 198 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~-------------- 198 (337)
+.+.+.+-.+..|.|++-+.-+.. -.-+.+.+.++.+++.++.|+++.- +|.....
T Consensus 14 ~~~~IAk~~~~aGtD~ilvGGs~G---------i~e~~ld~~v~~ik~~~~~p~iLFP-G~~~~Ls~~ADAvlFmSlLNS 83 (212)
T TIGR01769 14 ELKKIAKNAKEAGTDAILVGGSLG---------ISEDKLDQVVKKIKEITNLPVILFP-GSVNLLSRKADAVLFMSLLNS 83 (212)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCC---------CCHHHHHHHHHHHHHCCCCCEEECC-CCHHHHHHHHHHHHHHHHHCC
T ss_conf 699999999852898898366337---------3354788999986401578668827-884578888659888886536
Q ss_pred ------------HHHHHHHCC--C----CEEEECCCCC-CCCCCHHHHCCCCCCC---C---------------HHHHHC
Q ss_conf ------------999999769--9----7999458888-6510012310234432---3---------------244310
Q gi|254781020|r 199 ------------DIELGLKSG--I----RYFDIAGRGG-TSWSRIESHRDLESDI---G---------------IVFQDW 241 (337)
Q Consensus 199 ------------~~~~a~~aG--a----d~i~v~~~gG-~~~~~~~~~r~~~~~~---~---------------~~~~~~ 241 (337)
.+......+ . -+.++-+||+ ++..-....|.....- + ..-.|.
T Consensus 84 ~d~yfivGaqi~aA~~i~~~~PrlE~Ip~AY~iv~~G~ktavG~vG~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGS 163 (212)
T TIGR01769 84 ADTYFIVGAQIKAAVLIKKLQPRLEVIPTAYLIVGPGGKTAVGYVGKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGS 163 (212)
T ss_pred CCCCEEECCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99736741515789999872788563652268875887404465200125899866689999999987413512131057
Q ss_pred CCCHH---HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 63468---899999852289879972988888999999983888523
Q gi|254781020|r 242 GIPTP---LSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 242 gi~~~---~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
|=|++ +.+..++....++|+|.=||||++.=+.+-...|||.+-
T Consensus 164 GAs~Pv~~e~i~~~k~~~~~I~LIVGGGIr~~EiA~~~v~aGAd~IV 210 (212)
T TIGR01769 164 GASEPVSPETISLVKKKISSIPLIVGGGIRSPEIALKIVLAGADVIV 210 (212)
T ss_pred CCCCCCCHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCEEE
T ss_conf 86667866799999985489727752775888999999970898263
No 286
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=92.87 E-value=0.19 Score=26.91 Aligned_cols=171 Identities=12% Similarity=0.035 Sum_probs=84.8
Q ss_pred HHHHHHHHEEECCCCCCCCHHHC-CCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHC
Q ss_conf 47568863032455789981017-46299898962568685012663343000256999999998099066052022112
Q gi|254781020|r 22 NKKFFDDWHLIHRALPEISFDEV-DPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFS 100 (337)
Q Consensus 22 n~~~fd~~~l~p~~l~~~~~~~v-dlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~ 100 (337)
..+.|..+...|...+.. .+.. ++.+++. .....|+..++.. ......+.++...|.+..+..+++.....-+
T Consensus 32 ~~~~~aaVCV~P~~V~~a-~~~L~~s~v~v~-tVigFP~G~~~~~----~K~~E~~~ai~~GAdEiD~Vin~~~~~~g~~ 105 (221)
T PRK00507 32 KEYGFASVCVNPSYVKLA-AELLKGSDVKVC-TVIGFPLGASTTA----VKAFEAKDAIANGADEIDMVINIGALKSGDW 105 (221)
T ss_pred HHHCCCEEEECHHHHHHH-HHHHCCCCCCEE-EEEECCCCCCCHH----HHHHHHHHHHHCCCCEEEEECCHHHHHCCCH
T ss_conf 987994899898999999-998448998655-7813699999576----8999999999859987774025999975848
Q ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHH---HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 866888999998664012322027521236799899998---77650898576253203566520688524307999999
Q gi|254781020|r 101 DHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQ---AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIAL 177 (337)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (337)
+....+..++.+...... +..+-....++-+++.+ .....++|.+.-+.... ......+.++.
T Consensus 106 ~~v~~ei~~v~~~~~~~~----lKVIlEt~~Lt~~ei~~a~~~~~~aGadfvKTSTGf~----------~~gat~e~v~~ 171 (221)
T PRK00507 106 DAVEADIRAVVEAAGGKV----LKVIIETCLLTDEEKVKACEICKEAGADFVKTSTGFS----------TGGATVEDVKL 171 (221)
T ss_pred HHHHHHHHHHHHHHCCCC----EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECCCCC----------CCCCCHHHHHH
T ss_conf 899999999998727673----6999744659999999999999982978786058878----------89989999999
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 99873997178504786688999999976997999
Q gi|254781020|r 178 LSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 178 l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+++..+..+-+|..|.+.+.+.+....++|++-|=
T Consensus 172 m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~riG 206 (221)
T PRK00507 172 MRETVGPRVGVKASGGIRTLEDALAMIEAGATRLG 206 (221)
T ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHCC
T ss_conf 99972878638677898999999999982751321
No 287
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=92.87 E-value=0.41 Score=24.90 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=6.4
Q ss_pred HHHHHHCCCCEE
Q ss_conf 999997699799
Q gi|254781020|r 200 IELGLKSGIRYF 211 (337)
Q Consensus 200 ~~~a~~aGad~i 211 (337)
++..+|||||.|
T Consensus 168 A~aYvEAGAD~I 179 (287)
T TIGR02317 168 AKAYVEAGADMI 179 (287)
T ss_pred HHHHHHHCCCCC
T ss_conf 986787261531
No 288
>PRK13136 consensus
Probab=92.79 E-value=0.61 Score=23.92 Aligned_cols=141 Identities=15% Similarity=0.135 Sum_probs=79.7
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 99877650898576253203566520688524307999999998739971785047866889999999769979994588
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
..+.....+.+++.+. +.|.+. ..+..+.+ ...+...+. ++.-.++.+..+...+..-.+|..-..
T Consensus 107 f~~~~~~~GvdGlIip-DLP~eE-----------~~~~~~~~-~~~~i~~I~-liaPtt~~eRi~~i~~~a~gFiY~vs~ 172 (253)
T PRK13136 107 IYQQMKSAGVDGCLVV-DLPVEE-----------AAPHLTAC-KTAKIAPIL-LISPSTTQERLKKINEHGEGMLYYVCR 172 (253)
T ss_pred HHHHHHHCCCCCEECC-CCCHHH-----------HHHHHHHH-HHCCCCCEE-EECCCCCHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999997498720067-899777-----------69999999-975887125-526899889999999608981999855
Q ss_pred CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCC
Q ss_conf 88651001231023443232443106346889999985228987997298888899999998388852334799998414
Q gi|254781020|r 217 GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMD 296 (337)
Q Consensus 217 gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~ 296 (337)
-|.|+..... .-.....+..+++. .++||..-=||++..|+-+.... ||.|-+|+++.....+
T Consensus 173 ~GvTG~~~~~---------------~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~~~~~-ADGvIVGSaiV~~i~e 235 (253)
T PRK13136 173 PGTTGVRATL---------------PENFPAKMNQIKSM-TSLPIVTGFGIANRKMAAQALQY-ADGFVIGSLFVKAIAE 235 (253)
T ss_pred CCCCCCCCCC---------------HHHHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHH-CCEEEECHHHHHHHHH
T ss_conf 5236876446---------------38899999999972-69986997154999999999822-9999985899999986
Q ss_pred C--HHHHHHHHHHH
Q ss_conf 6--68999999999
Q gi|254781020|r 297 S--SDAVVAAIESL 308 (337)
Q Consensus 297 G--~~gv~~~l~~l 308 (337)
| .+.+.++.+.|
T Consensus 236 ~~~~~~~~~~~~~l 249 (253)
T PRK13136 236 GISKNALTRLAQSL 249 (253)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 49988999999870
No 289
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=92.36 E-value=0.69 Score=23.59 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=55.8
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999873997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
....|...+...++ ++ +..+.+.+..+.+.|+|.+.+|----+ ...+.. ...|.. .+....+
T Consensus 85 ~~~~r~~~~~~~ii-G~-S~h~~~e~~~a~~~gaDYi~~gpvf~T-----------~sK~~~--~~~g~~---~~~~~~~ 146 (180)
T pfam02581 85 VAEARELLGPDKII-GV-STHTLEEALEAEALGADYIGFGPVFPT-----------PTKPDA--PPLGLE---GLRAIAE 146 (180)
T ss_pred HHHHHHHCCCCCEE-EE-CCCCHHHHHHHHHCCCCCEEECCCCCC-----------CCCCCC--CCCCHH---HHHHHHH
T ss_conf 99999864977689-74-478899999998719980887476777-----------999998--878989---9999998
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 2289879972988888999999983888523347
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr 288 (337)
.-++||++-||| +..++-.++..||+.|.+-+
T Consensus 147 -~~~~Pv~AiGGI-~~~n~~~~~~~Ga~gvAvis 178 (180)
T pfam02581 147 -AVNIPVVAIGGI-TPENVPEVLEAGADGVAVVS 178 (180)
T ss_pred -HCCCCEEEECCC-CHHHHHHHHHCCCCEEEEEC
T ss_conf -589999999098-99999999985998899965
No 290
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=92.35 E-value=0.69 Score=23.58 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 07999999998739971-78504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 170 DLSSKIALLSSAMDVPL-LLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pi-i~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
++.+.++..|...+..+ +-..+ .+.+.+..|+++|+|.|-++|... +. +. ++
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEv---esle~~~eAl~agaDiImLDNm~~------e~----------------~~--~a 225 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEV---ESLEEAEEALEAGADIIMLDNMSP------EE----------------LK--EA 225 (280)
T ss_pred CHHHHHHHHHHHCCCCCEEEEEC---CCHHHHHHHHHCCCCEEEECCCCH------HH----------------HH--HH
T ss_conf 59999999997589986289974---999999999974999999769999------99----------------99--99
Q ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 9999852289879972988888999999983888523347999
Q gi|254781020|r 249 LEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 249 l~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+... ....++-+-++|||- -.-+-..-..|-|.+-+|.+..
T Consensus 226 v~~l-~~~~~~~lEaSGgIt-~~ni~~yA~tGVD~IS~galth 266 (280)
T COG0157 226 VKLL-GLAGRALLEASGGIT-LENIREYAETGVDVISVGALTH 266 (280)
T ss_pred HHHH-CCCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECCCCC
T ss_conf 9974-447766999758978-7789998626997998073304
No 291
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.02 E-value=0.76 Score=23.34 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 07999999998739971-78504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 170 DLSSKIALLSSAMDVPL-LLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pi-i~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
.+.+.++.+|...+... +...+ .+.+.++.+.++|+|.|.++|..- +.
T Consensus 178 ~~~~~i~~~r~~~~~~~~IeVEv---~~l~~~~~a~~~g~D~ImLDnms~----------------------------~~ 226 (281)
T PRK06543 178 SLTEALRHVRAQLGHTTHVEVEV---DRLDQIEPVLAAGVDTIMLDNFTL----------------------------DQ 226 (281)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------HH
T ss_conf 89999999997589987099996---678879999974999999779899----------------------------99
Q ss_pred HHH-HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 999-98522898799729888889999999838885233479
Q gi|254781020|r 249 LEM-ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 249 l~~-~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
+.+ +.....++.+-++||| +-..+.+.-..|.|.+-+|..
T Consensus 227 i~~av~~i~~~~~lEaSGgI-~~~ni~~yA~tGVD~IS~gal 267 (281)
T PRK06543 227 LREGVELIDGRAIVEASGNV-SLNTVPAIASTGVDVISVGAL 267 (281)
T ss_pred HHHHHHHHCCCEEEEEECCC-CHHHHHHHHHCCCCEEECCHH
T ss_conf 99999975793799998899-999999999739999983820
No 292
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=91.91 E-value=0.78 Score=23.27 Aligned_cols=101 Identities=10% Similarity=0.036 Sum_probs=68.4
Q ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHH----CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 9999987399717850478668899999997----699799945888865100123102344323244310634688999
Q gi|254781020|r 175 IALLSSAMDVPLLLKEVGCGLSSMDIELGLK----SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 175 i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~----aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
++++|+..+...++= + ++.+.+....+.+ .|+|.|-++---- +++... -...-.++.|.
T Consensus 95 ~~~aR~l~G~~~iiG-~-S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fp--------------T~TK~~-~~~~~g~e~l~ 157 (210)
T TIGR00693 95 VSEARKLLGPDKIIG-V-STHNLEELAEAAACELKEGADYIGVGPIFP--------------TPTKKD-AAPPVGLELLR 157 (210)
T ss_pred HHHHHHHCCCCCEEE-E-EECCHHHHHHHHHHHHHCCCCEEEECCCCC--------------CCCCCC-CCCCCCHHHHH
T ss_conf 899998538995798-5-337989999999876407898888637115--------------887889-87764888999
Q ss_pred HHHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 9985228-987997298888899999998388852334799998
Q gi|254781020|r 251 MARPYCN-EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 251 ~~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.+++... ++|+.+=|||... =+...+..||+.|-|-|..+.+
T Consensus 158 ~~~~~~~h~~P~VAIGGI~~~-n~~~v~~~G~~~vAVvSaI~~A 200 (210)
T TIGR00693 158 EIAATSIHDIPIVAIGGITLE-NVAEVLAAGADGVAVVSAIMQA 200 (210)
T ss_pred HHHHHCCCCCCEEEECCCCHH-HHHHHHHCCCCEEEEEEEECCC
T ss_conf 999861788765887598878-9999997288738886510157
No 293
>TIGR00419 tim triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase () (TIM) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism . The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder .; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process.
Probab=91.74 E-value=0.069 Score=29.48 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=36.6
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 85228987997298888899999998388852334799998
Q gi|254781020|r 253 RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 253 ~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
+++..++.|+.=|||.++.|+-+|+-||||.|.+|+..+++
T Consensus 203 ~evn~~V~vlcGagi~~~~d~~~A~~lg~eGvLlasg~~KA 243 (244)
T TIGR00419 203 KEVNESVRVLCGAGITTGEDAELAAQLGAEGVLLASGVLKA 243 (244)
T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECCEEECC
T ss_conf 01266407887686165889999736997768872556437
No 294
>KOG2334 consensus
Probab=91.56 E-value=0.86 Score=23.04 Aligned_cols=127 Identities=18% Similarity=0.138 Sum_probs=79.9
Q ss_pred CEEEECCCCHHHHHHHCCCC-----CHHHHHHHHHHHHHHCCCCEEEEE--CCCCC-CHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 85762532035665206885-----243079999999987399717850--47866-88999999976997999458888
Q gi|254781020|r 147 DGLFLHLNPLQEIIQPNGNT-----NFADLSSKIALLSSAMDVPLLLKE--VGCGL-SSMDIELGLKSGIRYFDIAGRGG 218 (337)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~l~~~~~~pii~k~--v~~~~-~~~~~~~a~~aGad~i~v~~~gG 218 (337)
.++.++..||.+.-...+.. ....+...+..+.+....|+-.|. ..... +.+..++....|..+|.|-..--
T Consensus 108 sgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~ 187 (477)
T KOG2334 108 SGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTR 187 (477)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 45300379997542134778501068888999999998457665146898447842079999999962875699986426
Q ss_pred CCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC---HHHHHHHH-HHCCCEEHHHHHHH
Q ss_conf 651001231023443232443106346889999985228987997298888---89999999-83888523347999
Q gi|254781020|r 219 TSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN---GVDILKSI-ILGASLGGLASPFL 291 (337)
Q Consensus 219 ~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~---g~Dv~kAl-alGAdaV~iGr~~l 291 (337)
+ .|.... +..+.+.++..+...||||+.||.+. +.|+-+.. ..|++.||+.|...
T Consensus 188 ------d-~r~~~~-----------~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~ 246 (477)
T KOG2334 188 ------D-ERNQEP-----------ATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAE 246 (477)
T ss_pred ------C-CCCCCC-----------CCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf ------6-677788-----------9779999999871663376155412577631288889985340455348652
No 295
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=91.44 E-value=0.42 Score=24.88 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH----HH--
Q ss_conf 999999769979994588886510012310234432324431063468899999852289879972988888----99--
Q gi|254781020|r 199 DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG----VD-- 272 (337)
Q Consensus 199 ~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g----~D-- 272 (337)
.++.+.++|+||++-|.+. +..+++...+-.++..=|||-- .|
T Consensus 141 ~a~~a~~~g~dGiVcs~~e-------------------------------~~~ir~~~~~~~~ivTPGIr~~~~~~~DQ~ 189 (231)
T PRK00230 141 LAKLAQEAGLDGVVCSAQE-------------------------------AAALREATGPDFLLVTPGIRPAGSDAGDQK 189 (231)
T ss_pred HHHHHHHHCCCEEECCHHH-------------------------------HHHHHHHCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 9999999699848638889-------------------------------999986459871898677277888756746
Q ss_pred ----HHHHHHHCCCEEHHHHHHHH
Q ss_conf ----99999838885233479999
Q gi|254781020|r 273 ----ILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 273 ----v~kAlalGAdaV~iGr~~l~ 292 (337)
--+|+..|||++-||||...
T Consensus 190 rv~TP~~Ai~~GAD~iVVGR~I~~ 213 (231)
T PRK00230 190 RVMTPAQAIAAGSDYIVVGRPITQ 213 (231)
T ss_pred CCCCHHHHHHCCCCEEEECCCCCC
T ss_conf 568999999879999998984568
No 296
>PRK13120 consensus
Probab=91.30 E-value=0.91 Score=22.88 Aligned_cols=160 Identities=14% Similarity=0.117 Sum_probs=88.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
+.+.-..++.+...+.....+.+++.+ ++.|.+. .+.+.......+...+.- +.-.++.+-++...
T Consensus 106 Y~Npi~~yG~e~F~~~~~~aGvdGlII-pDLP~EE------------~~~~~~~~~~~gi~~I~L-iaPtT~~eRi~~I~ 171 (285)
T PRK13120 106 YANPIERMGQRAFAQAAQAAGVDGVLV-VDYPPEE------------VDEFAAMLAEAGVAPIFL-LAPTSTEARIEAIG 171 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHH
T ss_conf 054999987999999999839877964-7999799------------999999999669965899-57999899999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCH-HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 76997999458888651001231023443232443106346-88999998522898799729888889999999838885
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPT-PLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~-~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
+..-.+|..-..-|.|+..... ... ...+..+++ ..++||..-=||++..|+-+. +-.||.
T Consensus 172 ~~s~GFvY~VS~~GVTG~~~~~----------------~~~l~~~i~~ik~-~t~~Pv~vGFGIs~~e~v~~~-~~~ADG 233 (285)
T PRK13120 172 RVARGYVYYVSLKGVTGAGSLD----------------TDDVARKLALIRR-HVHIPVGVGFGIRDAASAQRI-AAHADA 233 (285)
T ss_pred HHCCCCEEEEECCCCCCCCCCC----------------HHHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHH-HCCCCE
T ss_conf 5089818998656546887556----------------6889999999997-269975999625989999999-702999
Q ss_pred EHHHHHHHHHHCCC-H--------HHHHHHHHHHHHHHHHHH
Q ss_conf 23347999984146-6--------899999999999999999
Q gi|254781020|r 284 GGLASPFLKPAMDS-S--------DAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 284 V~iGr~~l~~~~~G-~--------~gv~~~l~~l~~el~~~m 316 (337)
|-||+++...+.++ + +--...+..+..+||...
T Consensus 234 vIVGSAiVk~Iee~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 275 (285)
T PRK13120 234 VVIGSKLIETMEQAGAQAGADQKNEAAIAAAQQWLHTIRLAL 275 (285)
T ss_pred EEECHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 998789999999707545655568899999999999999998
No 297
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=91.01 E-value=0.98 Score=22.71 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=62.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCC-CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 999999998739971785047866889999999769-9799945888865100123102344323244310634688999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSG-IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aG-ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
.+.++.++...+.+.+.+.--.+.+.+.+..+.+++ +|+|.++|..-.. +.+...+.
T Consensus 169 ~~a~~~~~~~~~~~~~~~idve~~~~~~~~~~~~~~~~~~IrlD~~~~~~----------------------~~~~~~~~ 226 (281)
T cd00516 169 LAAVKALRRWLPELFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE----------------------LDPAVLIL 226 (281)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCCCHHH----------------------HHHHHHHH
T ss_conf 99999999867877602699997889999999954999999979799588----------------------99999999
Q ss_pred HHH-----HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 998-----522898799729888889999999838885233479999
Q gi|254781020|r 251 MAR-----PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 251 ~~~-----~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
... ....++.|+++|||- ...+-.....|.|.+.+|+.+..
T Consensus 227 ~~~~~~~~~~~~~~~i~~SGgi~-~~~i~~~a~~gvd~i~iG~~~~~ 272 (281)
T cd00516 227 KARAHLDGKGLPRVKIEASGGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred HHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEEECCCCCC
T ss_conf 99987632578977999979999-99999999679899993822178
No 298
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=90.90 E-value=1 Score=22.65 Aligned_cols=223 Identities=13% Similarity=0.031 Sum_probs=95.5
Q ss_pred HHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHH--HHHHHHHHCCCHHH
Q ss_conf 0174629989896256868501266334300025699999999809906605202211286688--89999986640123
Q gi|254781020|r 42 DEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAI--KSFELRQYAPHTVL 119 (337)
Q Consensus 42 ~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~ 119 (337)
-.+-++|+|--..=.+|++++.|+- ...+-.+..+++.+|...-+-.++ ...++.. ..-++...-+...-
T Consensus 20 Gr~~v~TkfsrLtGr~PillaGMTP------tTVdp~ivAAaAnAGhwaELAGGG--q~t~e~~~~~i~ql~~~lepG~t 91 (717)
T COG4981 20 GRVKVSTKFSRLTGRSPILLAGMTP------TTVDPDIVAAAANAGHWAELAGGG--QVTEEIFTNAIEQLVSLLEPGRT 91 (717)
T ss_pred CCEEEEECHHHHCCCCCEEECCCCC------CCCCHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9678863124434899734347887------767999999885277435504785--03899999999999840588862
Q ss_pred -HHCCCCCCCCCCCCHH-HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCH
Q ss_conf -2202752123679989-99987765089857625320356652068852430799999999873997178504786688
Q gi|254781020|r 120 -ISNLGAVQLNYDFGVQ-KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSS 197 (337)
Q Consensus 120 -~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~ 197 (337)
..|.-+.... -+.++ ..+|.+.+..+.+-.+ ++.+...|.+..+...+.|+.|-. .+.|-++...|++...
T Consensus 92 ~qfN~ifldpy-lw~~qig~krLv~kara~G~~I-----~gvvIsAGIP~le~A~ElI~~L~~-~G~~yv~fKPGtIeqI 164 (717)
T COG4981 92 AQFNSIFLDPY-LWKLQIGGKRLVQKARASGAPI-----DGVVISAGIPSLEEAVELIEELGD-DGFPYVAFKPGTIEQI 164 (717)
T ss_pred CEEEEEEECHH-HHHHCCCHHHHHHHHHHCCCCC-----CEEEEECCCCCHHHHHHHHHHHHH-CCCEEEEECCCCHHHH
T ss_conf 11567986567-8663377678789998469972-----417972698848999999998764-5861687667729999
Q ss_pred HHHHH-HHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
Q ss_conf 99999-99769979994588886510012310234432324431063468899999852289879972988888999999
Q gi|254781020|r 198 MDIEL-GLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKS 276 (337)
Q Consensus 198 ~~~~~-a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kA 276 (337)
..... |.+.----|++...|| |. .++..-...+ - ++.+.+..-.-+++|.++.-|||-+..|.+..
T Consensus 165 ~svi~IAka~P~~pIilq~egG---------ra-GGHHSweDld--~-llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~Y 231 (717)
T COG4981 165 RSVIRIAKANPTFPIILQWEGG---------RA-GGHHSWEDLD--D-LLLATYSELRSRDNIVLCVGGGIGTPDDAAPY 231 (717)
T ss_pred HHHHHHHHCCCCCCEEEEEECC---------CC-CCCCCHHHCC--C-HHHHHHHHHHCCCCEEEEECCCCCCHHHCCCC
T ss_conf 9999998608998569997157---------66-7755542202--0-89999999845797799966876881211200
Q ss_pred H-----------HHCCCEEHHHHHHHH
Q ss_conf 9-----------838885233479999
Q gi|254781020|r 277 I-----------ILGASLGGLASPFLK 292 (337)
Q Consensus 277 l-----------alGAdaV~iGr~~l~ 292 (337)
| +|==|.+.+|+..+.
T Consensus 232 LTGeWSt~~g~P~MP~DGiLvGtaaMa 258 (717)
T COG4981 232 LTGEWSTAYGFPPMPFDGILVGTAAMA 258 (717)
T ss_pred CCCCHHHHCCCCCCCCCEEEECHHHHH
T ss_conf 054106542999887451575256776
No 299
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=90.88 E-value=1 Score=22.64 Aligned_cols=88 Identities=11% Similarity=0.027 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 07999999998739971785047866889999999769979994588886510012310234432324431063468899
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
+..+.++..+...+...+...+ .+.+.++.+.++|+|.|.++|..- +.+
T Consensus 194 ~i~~av~~ar~~~~~~~IeVEv---~~l~q~~eal~~gaDiIlLDN~s~----------------------------~~~ 242 (296)
T PRK09016 194 SIRQAVEKAFWLHPDVPVEVEV---ENLDELDQALKAGADIIMLDNFTT----------------------------EQM 242 (296)
T ss_pred CHHHHHHHHHHHCCCCCEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------HHH
T ss_conf 8999999999868998589996---878999999965999999889899----------------------------999
Q ss_pred HHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 999-8522898799729888889999999838885233479
Q gi|254781020|r 250 EMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 250 ~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
.++ .-...++.+-++|||. -..+.+.-..|-|.+-+|..
T Consensus 243 k~av~~~~~~~~lEaSGgI~-l~ni~~yA~tGVD~IS~GaL 282 (296)
T PRK09016 243 REAVKRTNGKAALEVSGNVT-LETLREFAETGVDFISVGAL 282 (296)
T ss_pred HHHHHHHCCCEEEEEECCCC-HHHHHHHHHCCCCEEECCHH
T ss_conf 99999747967999878998-99999999729999988876
No 300
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=90.87 E-value=1 Score=22.63 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=72.6
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99998776508985762532035665206885243079999999987399717850478668899999997699799945
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
+...+..-..+++-+.+|.... ......++++|+. +.+.. .+-|..++.+...-.=.-+|.|.+=
T Consensus 74 ~~~i~~fa~agad~It~H~E~~------------~~~~r~i~~Ik~~-G~kaG--v~lnP~Tp~~~i~~~l~~vD~VllM 138 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEAT------------EHIHRTIQLIKEL-GVKAG--LVLNPATPLEALEPVLDDVDLVLLM 138 (220)
T ss_pred HHHHHHHHHHCCCEEEEEECCC------------CCHHHHHHHHHHC-CCEEE--EEECCCCCHHHHHHHHHHCCEEEEE
T ss_conf 9999999981999899971277------------6899999999975-98577--9978999778999898657899998
Q ss_pred --CC--CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCC---CCEEEECCCCCCHHHHHHHH-HHCCCEEHH
Q ss_conf --88--88651001231023443232443106346889999985228---98799729888889999999-838885233
Q gi|254781020|r 215 --GR--GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCN---EAQFIASGGLRNGVDILKSI-ILGASLGGL 286 (337)
Q Consensus 215 --~~--gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~---~v~IiadGGIr~g~Dv~kAl-alGAdaV~i 286 (337)
|. ||....+- ..+-+...++..+ ++-|-.||||.. +-++.+ ++|||.+-.
T Consensus 139 sVnPGfgGQ~Fi~~--------------------~l~Ki~~lr~~~~~~~~~~IeVDGGI~~--~t~~~~~~AGad~~Va 196 (220)
T COG0036 139 SVNPGFGGQKFIPE--------------------VLEKIRELRAMIDERLDILIEVDGGINL--ETIKQLAAAGADVFVA 196 (220)
T ss_pred EECCCCCCCCCCHH--------------------HHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHHHHCCCCEEEE
T ss_conf 57799866314799--------------------9999999999740247759999689698--8899999739999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 479999841466899999999999999
Q gi|254781020|r 287 ASPFLKPAMDSSDAVVAAIESLRKEFI 313 (337)
Q Consensus 287 Gr~~l~~~~~G~~gv~~~l~~l~~el~ 313 (337)
||+ ++.. .+ ....++.|+.++.
T Consensus 197 GSa-lF~~---~d-~~~~i~~~~~~~~ 218 (220)
T COG0036 197 GSA-LFGA---DD-YKATIRELRGELL 218 (220)
T ss_pred EEE-EECC---CC-HHHHHHHHHHHHH
T ss_conf 777-8678---11-9999999998762
No 301
>PRK12376 putative translaldolase; Provisional
Probab=90.67 E-value=1 Score=22.52 Aligned_cols=79 Identities=14% Similarity=0.032 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 34688999998522898799729888889999999838885233479999841466899999999999999999980898
Q gi|254781020|r 243 IPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 243 i~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~ 322 (337)
++.+..+.....-..+..|++.+ +|+..+|.+|+.+|||.|-+.-.++.....-..++.++-..+..-+..--...|++
T Consensus 158 ~~~i~~~~~i~~~~~~tkILaAS-iR~~~~v~~a~~~GadiiTipp~vl~kl~~~~k~l~~f~~d~vk~F~~d~~~~g~~ 236 (238)
T PRK12376 158 LPLMKEALKICHQKPGVELLWAS-PRELYNIIQADQLGCDIITVTADILKKLPLLGKDLEEYSLDTVKMFAKDAQSLGFS 236 (238)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEE-CCCHHHHHHHHHCCCCEEECCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 79999999998428874999971-48889999999869999984999999867309997896599999999999986784
No 302
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=90.66 E-value=1.1 Score=22.52 Aligned_cols=87 Identities=9% Similarity=-0.011 Sum_probs=53.8
Q ss_pred HHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 8999999976-997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 197 SMDIELGLKS-GIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 197 ~~~~~~a~~a-Gad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
.+.++.+++. ++|+++|+|..-+. -+..+.+..+++.. ++||+.-+|+.. .-+-+
T Consensus 161 ~~~~~~~~~~~~aDaiivTG~~TG~----------------------~~~~~~l~~vk~~~-~~PvlvGSGvt~-~Ni~~ 216 (254)
T pfam03437 161 ESAVLDTIERGLADAVILSGKTTGG----------------------EVDLEELKLAKETV-PVPVLVGSGVNL-ENLEE 216 (254)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC----------------------CCCHHHHHHHHHHC-CCCEEEECCCCH-HHHHH
T ss_conf 9999999982689899978730279----------------------99999999999626-998899579898-89999
Q ss_pred HHHHCCCEEHHHHHHHHHHC----CCHHHHHHHHHHH
Q ss_conf 99838885233479999841----4668999999999
Q gi|254781020|r 276 SIILGASLGGLASPFLKPAM----DSSDAVVAAIESL 308 (337)
Q Consensus 276 AlalGAdaV~iGr~~l~~~~----~G~~gv~~~l~~l 308 (337)
.|.. ||.+-+||.|-.-.. --++.|+++++..
T Consensus 217 ~l~~-ADG~IVGS~~K~~G~~~n~VD~~RV~~fm~~v 252 (254)
T pfam03437 217 LWSI-ADGFIVGTSIKKGGKFNNEVDIERVSKIAELA 252 (254)
T ss_pred HHHH-CCEEEEEHHEEECCEECCCCCHHHHHHHHHHH
T ss_conf 9987-89999842230588758977999999999984
No 303
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.26 E-value=1.1 Score=22.31 Aligned_cols=89 Identities=15% Similarity=0.014 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHCCCCE-EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 07999999998739971-78504786688999999976997999458888651001231023443232443106346889
Q gi|254781020|r 170 DLSSKIALLSSAMDVPL-LLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pi-i~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
++.+.++..|...+... +... +.+.+.++.++++|+|.|.++|..- +.
T Consensus 177 ~i~~av~~~r~~~~~~~kIeVE---v~sl~q~~~al~~g~d~ImLDNmsp----------------------------~~ 225 (281)
T PRK06106 177 GVREAIRRARAGVGHLVKIEVE---VDTLEQLEEALELGVDAVLLDNMSP----------------------------DT 225 (281)
T ss_pred CHHHHHHHHHHHCCCCCEEEEE---ECCHHHHHHHHHCCCCEEEECCCCH----------------------------HH
T ss_conf 8999999999757997249999---6999999999727998999879999----------------------------99
Q ss_pred HHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 9999-85228987997298888899999998388852334799
Q gi|254781020|r 249 LEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 249 l~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
+.++ .-...++.+-++||| +-..+.+.-..|.|++.+|...
T Consensus 226 ~~~av~~~~~~~~~EaSGgI-~~~ni~~yA~tGvD~IS~g~lt 267 (281)
T PRK06106 226 LREAVAIVAGRAITEASGRI-TPETAPAIAASGVDLISVGWLT 267 (281)
T ss_pred HHHHHHHHCCCEEEEEECCC-CHHHHHHHHHCCCCEEECCHHH
T ss_conf 99999985684689997899-9999999997399999838432
No 304
>PRK04302 triosephosphate isomerase; Provisional
Probab=90.22 E-value=0.28 Score=25.95 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=38.6
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 99985228987997298888899999998388852334799998
Q gi|254781020|r 250 EMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 250 ~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
..++++..+++|+.-|+|.++.|+..++-+|.|.+.+|++.|++
T Consensus 165 ~~~~~~~~~i~ILYGGsV~~~n~~~~~~~~~vDG~LVGgAsLkA 208 (223)
T PRK04302 165 EAVRKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred HHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEEEEEC
T ss_conf 99996479975899784687889999746899858976256668
No 305
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.64 E-value=1.3 Score=22.01 Aligned_cols=90 Identities=11% Similarity=0.030 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCCCC-EEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
Q ss_conf 30799999999873997-17850478668899999997699799945888865100123102344323244310634688
Q gi|254781020|r 169 ADLSSKIALLSSAMDVP-LLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL 247 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~p-ii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~ 247 (337)
.++.+.++.++...+.. .+...+ .+.+.++.++++|+|.|.++|..- +
T Consensus 172 g~i~~av~~~r~~~~~~~kIeVEv---~s~~q~~~a~~~g~diImLDNm~p----------------------------~ 220 (277)
T PRK08072 172 GSITKAVTSVREKLGHMVKIEVET---ETEEQVREAVAAGADIIMFDNRTP----------------------------D 220 (277)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------H
T ss_conf 789999999998659985599971---989999999867998999879899----------------------------9
Q ss_pred HHHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 99999-85228987997298888899999998388852334799
Q gi|254781020|r 248 SLEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 248 al~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
.+.++ +-+..++.+-++||| +-..+-+.-..|-|.+-+|...
T Consensus 221 ~ik~~v~~~~~~~~~EaSGgI-~~~ni~~yA~tGVD~IS~g~lt 263 (277)
T PRK08072 221 EIREFVKLVPSAIVTEASGGI-TLENLPKYGGTGVDYISLGFLT 263 (277)
T ss_pred HHHHHHHHHCCCEEEEEECCC-CHHHHHHHHHCCCCEEECCHHC
T ss_conf 999999961696499998899-8999999996499999868100
No 306
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.25 E-value=1.4 Score=21.84 Aligned_cols=110 Identities=9% Similarity=0.093 Sum_probs=67.4
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC-C
Q ss_conf 668899999-997699799945--888865100123102344323244310634688999998522898799729888-8
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR-N 269 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr-~ 269 (337)
.++|+.++. ..+.|+|.+-++ |..|-. ..| .+ ..+.|.++++. .++|+..=||=- .
T Consensus 152 ~T~Peea~~Fv~~TgvD~LAvaiGt~HG~~-----------~~p-------~l-~~~~l~~I~~~-~~iPLVLHGgSGi~ 211 (283)
T PRK07998 152 KTEPEKVKTFVERTGCDMLAVSIGNVHGLD-----------DIP-------RI-DIPLLKRIAEV-SPVPLVIHGGSGIP 211 (283)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCCC-----------CCC-------CC-CHHHHHHHHHH-CCCCEEEECCCCCC
T ss_conf 899999999999868899964046645678-----------788-------63-89999998864-79878986999999
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHHHCC--------C------HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999998388852334799998414--------6------68999999999999999999808985
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKPAMD--------S------SDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~~~~--------G------~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
-.|+-||+.+|-.=|-++|-+-++... . .+-.....+.+++..+.-|.++|..+
T Consensus 212 ~e~i~~ai~~Gi~KiNi~Tel~~a~~~~~r~~l~~np~~~d~~~~~~~~~~a~~e~v~~ki~lfgS~~ 279 (283)
T PRK07998 212 PDILRSFVNYRVAKVNIASDLRKAFITTVGKAYVNNHNEANLARVMASAKQAVEEDVYSKIKMMNENH 279 (283)
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999869869995868999999999999986877689799979999999999999999878797
No 307
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=89.08 E-value=1.4 Score=21.77 Aligned_cols=210 Identities=13% Similarity=0.107 Sum_probs=110.0
Q ss_pred CCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHH-HHHHHHHHHCCCHHHHHCCCCCCCCCCCCH
Q ss_conf 5686850126633430002569999999980990660520221128668-889999986640123220275212367998
Q gi|254781020|r 56 SFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNA-IKSFELRQYAPHTVLISNLGAVQLNYDFGV 134 (337)
Q Consensus 56 ~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (337)
+.|++.-+.+.. .++.++.-+ .+..-..-+=+.++++...++ .....+++..|+..+++-.. ..+.+.
T Consensus 2 ~~P~LQvALD~~------~l~~A~~~a-~~v~~~vDIIE~GTpLik~~G~~aV~~lr~~~P~~~IvAD~K----t~DaG~ 70 (220)
T PRK13305 2 SRPLLQLALDHT------SLEAAQRDV-ALLQDHVDIVEAGTILCLNEGLGAVKALREQCPDKIIVADWK----VADAGE 70 (220)
T ss_pred CCCCEEEEECCC------CHHHHHHHH-HHHHCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEE----ECCCHH
T ss_conf 986147655679------999999999-983046889990879999842999999998789987998754----526259
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99998776508985762532035665206885243079999999987399717850478668899999997699799945
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
-+.+.+.+ .++|..-+--..+ .+...+.++. ....+..+.+-+.+ ..+.+.++...+.|++-+++
T Consensus 71 ~Ea~~a~~-aGAD~vTVlg~A~-----------~~TI~~~~~~-a~~~g~~v~vDli~-~~~~~~ak~~~~lgv~~v~~- 135 (220)
T PRK13305 71 TLAQQAFG-AGANWMTIICAAP-----------LATVEKGHAV-AQSCGGEIQIELFG-NWTLDDARDWHRIGVRQAIY- 135 (220)
T ss_pred HHHHHHHH-CCCCEEEEECCCC-----------HHHHHHHHHH-HHHCCCEEEEEECC-CCCHHHHHHHHHCCCCEEEE-
T ss_conf 99999986-5998899956689-----------7999999999-99809989998458-99878999999869988999-
Q ss_pred CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 888865100123102344323244310634688999998522-8987997298888899999998388852334799998
Q gi|254781020|r 215 GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC-NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 215 ~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~-~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
|-|... |..+ ..|+...+ ...+.+. ..++|-..|||. ..++-++..+|++.+-+||+.-.+
T Consensus 136 -H~g~D~-------q~~g------~~~~~~~l---~~~k~~~~~~~~vaVAGGI~-~~~i~~~~~~~~~ivIvGraIt~A 197 (220)
T PRK13305 136 -HRGRDA-------QASG------QQWGEADL---ARMKALSDIGLELSITGGIT-PADLPLFKDIRVKAFIAGRALAGA 197 (220)
T ss_pred -EECCCH-------HHCC------CCCCHHHH---HHHHHHHHCCCEEEEECCCC-HHHHHHHHCCCCCEEEECHHHCCC
T ss_conf -833367-------6518------98631019---99998760696499988878-889999971699899989365189
Q ss_pred HCCCHHHHHHHHHHHHHHHHH
Q ss_conf 414668999999999999999
Q gi|254781020|r 294 AMDSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 294 ~~~G~~gv~~~l~~l~~el~~ 314 (337)
+-....-+.+++++..
T Consensus 198 -----~dP~~aA~~~~~~I~~ 213 (220)
T PRK13305 198 -----ANPAQVAGDFHAQIDA 213 (220)
T ss_pred -----CCHHHHHHHHHHHHHH
T ss_conf -----9999999999999999
No 308
>PRK12857 putative aldolase; Reviewed
Probab=88.80 E-value=1.5 Score=21.65 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=68.2
Q ss_pred CCCHHHHHHH-HHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC-C
Q ss_conf 6688999999-97699799945--888865100123102344323244310634688999998522898799729888-8
Q gi|254781020|r 194 GLSSMDIELG-LKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR-N 269 (337)
Q Consensus 194 ~~~~~~~~~a-~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr-~ 269 (337)
.++|+.++.- .+.|+|++-++ |..|.- .+.| .+ ..+.|.++++. .++|+..=||=- .
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGn~HG~y----------k~~p-------~L-~~~~L~~I~~~-~~vPLVLHGgSGi~ 214 (284)
T PRK12857 154 FTDPEEARRFVEETGVDALAIAIGTAHGPY----------KGVP-------KL-DFDRLAKIREL-VNIPLVLHGSSGVP 214 (284)
T ss_pred CCCHHHHHHHHHHHCCCEEEHHHCCCCCCC----------CCCC-------CC-CHHHHHHHHHH-CCCCEEEECCCCCC
T ss_conf 589999999999879787701205666776----------8988-------56-99999999861-69998976899999
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHHHC--------CCH------HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999838885233479999841--------466------8999999999999999999808985
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKPAM--------DSS------DAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~~~--------~G~------~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
-.|+-|++.+|-.=|.++|-+.++.. ..+ +-+....+.+++..+..|.+.|+.+
T Consensus 215 ~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~lfGS~g 282 (284)
T PRK12857 215 DEAIRKAISLGVRKVNIDTNIREAFVAALRRVLEKNPDEIDPRKILGPAREAAKEVIREKIRLFGSAG 282 (284)
T ss_pred HHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999809759974879999999999999986978589899999999999999999999968898
No 309
>TIGR00343 TIGR00343 pyridoxine biosynthesis protein; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in S. cerevisiae . Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in C. nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance. ..
Probab=88.63 E-value=0.25 Score=26.20 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=51.8
Q ss_pred CCCCEE--EECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH---------CCCHH--HHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 289879--972988888999999983888523347999984---------14668--99999999999999999980898
Q gi|254781020|r 256 CNEAQF--IASGGLRNGVDILKSIILGASLGGLASPFLKPA---------MDSSD--AVVAAIESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 256 ~~~v~I--iadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~---------~~G~~--gv~~~l~~l~~el~~~m~~~G~~ 322 (337)
..+.|| .+.||+.++.|++-.+-||+|.|++|+.+++.. ..... .-.+.+..+..+|-..|.-+-..
T Consensus 201 ~G~lPvvnfaaGGvatPadaal~mqlG~~GvfvGsGifks~~P~~~a~aiv~a~~~y~~~~~~~~~s~~lG~~m~G~~~~ 280 (298)
T TIGR00343 201 EGKLPVVNFAAGGVATPADAALLMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTHYDNPEVLAEVSKDLGEAMKGIEIS 280 (298)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 38974464135764655789999984778247534200056778999999999972001789999999888886043177
Q ss_pred CHHHHH
Q ss_conf 578961
Q gi|254781020|r 323 RVQELY 328 (337)
Q Consensus 323 ~i~el~ 328 (337)
+|.+-.
T Consensus 281 ~~~~~~ 286 (298)
T TIGR00343 281 EISEEE 286 (298)
T ss_pred HHHHHH
T ss_conf 776766
No 310
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=88.03 E-value=1.7 Score=21.35 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=65.5
Q ss_pred CCCHHHHHHH-HHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEE--CCCCC
Q ss_conf 6688999999-97699799945--8888651001231023443232443106346889999985228987997--29888
Q gi|254781020|r 194 GLSSMDIELG-LKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIA--SGGLR 268 (337)
Q Consensus 194 ~~~~~~~~~a-~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~Iia--dGGIr 268 (337)
.++|+.++.. .+.|+|.+-++ |..|.- .+.| -+ ....|.++++ ..++|+.. .+|+
T Consensus 155 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~y----------k~~p-------~l-~~~~L~~I~~-~~~vPLVLHGgSGi- 214 (286)
T PRK08610 155 YADPKECQELVEKTGIDALAPALGSVHGPY----------KGEP-------KL-GFKEMEEIGL-STGLPLVLHGGTGI- 214 (286)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCCC----------CCCC-------CC-CHHHHHHHHH-HCCCCEEEECCCCC-
T ss_conf 379999999999739866731115544655----------8998-------77-8999999985-24999796589999-
Q ss_pred CHHHHHHHHHHCCCEEHHHHHHHHHHCC--------C------HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8899999998388852334799998414--------6------68999999999999999999808985
Q gi|254781020|r 269 NGVDILKSIILGASLGGLASPFLKPAMD--------S------SDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 269 ~g~Dv~kAlalGAdaV~iGr~~l~~~~~--------G------~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
.-.|+-|++.+|=.=|.++|-+-.+... . ..-+....+.+++..+.-|.+.|+.+
T Consensus 215 ~~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~~~dp~~~~~~~~~a~~~~V~~ki~~fGS~g 283 (286)
T PRK08610 215 PTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIKEFGTSN 283 (286)
T ss_pred CHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999859848996718899999999999985977578799999999999999999999838866
No 311
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.00 E-value=1.7 Score=21.34 Aligned_cols=116 Identities=12% Similarity=0.023 Sum_probs=62.7
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHHHCCCCEE
Q ss_conf 9998776508985762532035665206885243079999999987399717850----478668899999997699799
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE----VGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~----v~~~~~~~~~~~a~~aGad~i 211 (337)
...+..+..+++++.+..+.-. ....-+.+.++.+.+.+. .|+++-- .+...+++..+++.+..-..+
T Consensus 82 ~la~~A~~~Gad~i~~~pP~y~------~~~~~~~l~~yf~~va~~--lPi~lYn~P~~tg~~l~~~~~~~L~~~~~~v~ 153 (279)
T cd00953 82 ELARAAKSFGIYAIASLPPYYF------PGIPEEWLIKYFTDISSP--YPTFIYNYPKATGYDINARMAKEIKKAGGDII 153 (279)
T ss_pred HHHHHHHHCCCCEEEEECCCCC------CCCCHHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 9999999779998997688678------999999999999999850--98769967753588889999999981799889
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 945888865100123102344323244310634688999998522898799729888889999999838885233479
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
-+-...+ -+..+.......+++.|+ .| ...-.+.++++||+.+..|.+
T Consensus 154 giKds~~--------------------------d~~~~~~~~~~~~~~~v~-~G---~d~~~~~~l~~Ga~G~i~~~~ 201 (279)
T cd00953 154 GVKDTNE--------------------------DISHMLEYKRLVPDFKVY-SG---PDSLIFSALRSGLDGSVAAAS 201 (279)
T ss_pred EEECCCC--------------------------CHHHHHHHHHHCCCCEEE-CC---CHHHHHHHHHCCCEEEEEHHH
T ss_conf 9973876--------------------------999999999848994785-69---579999999809979997089
No 312
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.92 E-value=1.7 Score=21.31 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=71.5
Q ss_pred HHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE-C---CCC
Q ss_conf 650898576253203566520688524307999999998739971785047866889999999769979994-5---888
Q gi|254781020|r 142 HVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI-A---GRG 217 (337)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v-~---~~g 217 (337)
...+++.+.+|..... .....++++++.--..-++ +...+..+......+ -+|.|.+ + |.+
T Consensus 81 ~~~g~d~I~~H~Ea~~------------~~~~~i~~ik~~g~k~Gla--lnp~T~~~~l~~~l~-~iD~VlvMtV~PGf~ 145 (220)
T PRK05581 81 AKAGADIITFHVEASE------------HIHRLLQLIKEAGIKAGLV--LNPATPLEYLEYVLP-LLDLVLLMSVNPGFG 145 (220)
T ss_pred HHCCCCEEEECCCCCC------------CHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHH-HHCEEEEEEECCCCC
T ss_conf 9739988998167502------------7999999999749970467--669999899999987-415258998658878
Q ss_pred CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCC
Q ss_conf 865100123102344323244310634688999998-5228987997298888899999998388852334799998414
Q gi|254781020|r 218 GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMD 296 (337)
Q Consensus 218 G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~ 296 (337)
|..+.. ..+..+..+.... +-..++.|..||||.... +-+...+|||.+-.||+++..-
T Consensus 146 GQ~f~~-----------------~~l~ki~~l~~~~~~~~~~~~I~VDGGIn~~~-i~~l~~~Gad~~V~GS~iF~~~-- 205 (220)
T PRK05581 146 GQKFIP-----------------EVLEKIREVRKLIDERGLDILIEVDGGVNAEN-IKECAEAGADVFVAGSAVFGAP-- 205 (220)
T ss_pred CCCCCH-----------------HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH-HHHHHHCCCCEEEECHHHHCCC--
T ss_conf 764556-----------------69999999999998459975599978989899-9999977999999794885799--
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 6689999999999999
Q gi|254781020|r 297 SSDAVVAAIESLRKEF 312 (337)
Q Consensus 297 G~~gv~~~l~~l~~el 312 (337)
-....++.|++.+
T Consensus 206 ---d~~~~i~~lk~~~ 218 (220)
T PRK05581 206 ---DYKEAIDELRAEL 218 (220)
T ss_pred ---CHHHHHHHHHHHH
T ss_conf ---9999999999985
No 313
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=87.85 E-value=1.7 Score=21.29 Aligned_cols=112 Identities=15% Similarity=0.143 Sum_probs=64.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCC---CCHHHH
Q ss_conf 99999999873997178504786688999999976997999458888651001231023443232443106---346889
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWG---IPTPLS 248 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~g---i~~~~a 248 (337)
.+.++.|.+. +.++-+ ..+.+..-+..|+++||+.|..-- | | ..+.| ++.+..
T Consensus 95 lkai~~L~~~-gi~vn~---Tavfs~~Qa~~Aa~aGA~yvsPf~--G---------R---------i~d~G~Dg~~~i~~ 150 (222)
T PRK12656 95 LAAIKTLKAE-GYHITA---TAIYTTFQGLLAIEAGADYLAPYY--N---------R---------MENLNIDSEAVIGQ 150 (222)
T ss_pred HHHHHHHHHC-CCCEEE---EEECCHHHHHHHHHCCCCEEEECC--C---------C---------HHHCCCCCHHHHHH
T ss_conf 9999999975-986568---872799999999986998999714--6---------4---------87549992899999
Q ss_pred HHHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCC---HHHHHHHHHHH
Q ss_conf 9999-852289879972988888999999983888523347999984146---68999999999
Q gi|254781020|r 249 LEMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDS---SDAVVAAIESL 308 (337)
Q Consensus 249 l~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G---~~gv~~~l~~l 308 (337)
+... ...+.+..|++ .-||+..++.+++.+|||.+-+.-.++.....- .+++..+.+.|
T Consensus 151 i~~~~~~~~~~tkIL~-ASiR~~~~v~~a~~~G~d~iTipp~v~~~l~~hp~T~~~~~~F~~Dw 213 (222)
T PRK12656 151 LAEAINRENSNSKILA-ASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFGDDW 213 (222)
T ss_pred HHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999985599961986-52689999999998699999859999999974901799999999999
No 314
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.75 E-value=1.7 Score=21.25 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 07999999998739971785047866889999999769979994588886510012310234432324431063468899
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
+..+.++..+...+...+...+ .+.+.++.+.++|+|.|.++|..- +.+
T Consensus 185 ~i~~av~~~~~~~~~~~IeVEv---e~l~q~~~al~~g~d~ImLDNms~----------------------------~~~ 233 (288)
T PRK06978 185 GVGEALDAAFALNAGVPVQIEV---ETLAQLETALAHGAQSVLLDNFTL----------------------------DMM 233 (288)
T ss_pred CHHHHHHHHHHHCCCCCEEEEE---CCHHHHHHHHHCCCCEEEECCCCH----------------------------HHH
T ss_conf 8999999999818998659996---447778999848999999579999----------------------------999
Q ss_pred HHH-HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 999-8522898799729888889999999838885233479
Q gi|254781020|r 250 EMA-RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 250 ~~~-~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
.++ +-...++.+-++||| +-..+-+.-..|.|++-+|..
T Consensus 234 ~~av~~~~~~~~lEaSGgI-~~~ni~~yA~tGVD~IS~GaL 273 (288)
T PRK06978 234 REAVRVTAGRAVLEVSGGV-NFDTVRAFAETGVDRISIGAL 273 (288)
T ss_pred HHHHHHHCCCEEEEEECCC-CHHHHHHHHHCCCCEEECCHH
T ss_conf 9999964796799998999-999999999669999988854
No 315
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.47 E-value=1.8 Score=21.15 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=73.4
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHHHHHHCCCCEEEE-C-
Q ss_conf 987765089857625320356652068852430799999999873997178504786-6889999999769979994-5-
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCG-LSSMDIELGLKSGIRYFDI-A- 214 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~-~~~~~~~~a~~aGad~i~v-~- 214 (337)
.+.....+++.+.+|..... .....++++++.-- ...+ +-|. +..+......+ -+|.+.+ +
T Consensus 74 i~~~~~aGad~I~~H~Ea~~------------~~~~~i~~Ik~~g~-k~Gl--alnP~T~~~~l~~~l~-~~D~VLvMtV 137 (220)
T PRK08883 74 IPDFAKAGASMITFHVEASE------------HVDRTLQLIKEHGC-QAGV--VLNPATPLAHLEYIMD-KVDLILLMSV 137 (220)
T ss_pred HHHHHHCCCCEEEECCCCCC------------CHHHHHHHHHHCCC-CEEE--EECCCCCHHHHHHHHH-HCCEEEEEEE
T ss_conf 99999759988998577654------------99999999998599-6688--8479998799999997-4697999874
Q ss_pred CC--CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 88--8865100123102344323244310634688999998-52289879972988888999999983888523347999
Q gi|254781020|r 215 GR--GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 215 ~~--gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
+. +|..+.. ..+..+..+.... +-+.++.|..||||..- -+-+...+|||.+-.|+++.
T Consensus 138 ~PGf~GQ~f~~-----------------~~l~Ki~~l~~~~~~~~~~~~I~VDGGI~~~-ti~~l~~aGad~~V~GS~iF 199 (220)
T PRK08883 138 NPGFGGQSFIP-----------------HTLDKLRAVRKMIDASGRDIRLEIDGGVKVD-NIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred CCCCCCCCCCH-----------------HHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHCCCCEEEECHHHH
T ss_conf 58988754557-----------------7999999999988744998079998987899-99999987999999682674
Q ss_pred HHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9841466899999999999999
Q gi|254781020|r 292 KPAMDSSDAVVAAIESLRKEFI 313 (337)
Q Consensus 292 ~~~~~G~~gv~~~l~~l~~el~ 313 (337)
.. +-....++.|+.++.
T Consensus 200 ~~-----~d~~~~i~~lr~~~~ 216 (220)
T PRK08883 200 GQ-----PDYKAVIDEMRAELA 216 (220)
T ss_pred CC-----CCHHHHHHHHHHHHH
T ss_conf 89-----999999999999999
No 316
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=87.26 E-value=1.8 Score=21.08 Aligned_cols=111 Identities=13% Similarity=0.076 Sum_probs=68.6
Q ss_pred CCCCHHHHHH-HHHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8668899999-997699799945--8-88865100123102344323244310634688999998522898799729888
Q gi|254781020|r 193 CGLSSMDIEL-GLKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR 268 (337)
Q Consensus 193 ~~~~~~~~~~-a~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr 268 (337)
..++|+.++. ..+.|+|.+-++ | ||--. +. + --..+.|.++++. -++|+..=||=-
T Consensus 151 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk-----------~~-------p-~L~~d~L~~I~~~-~~iPLVLHGgSG 210 (281)
T PRK06806 151 LLTSTEEAKRFAEETDVDALAVAIGNAHGMYN-----------GD-------P-NLRLDRLQEINDN-VHIPLVLHGGSG 210 (281)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC-----------CC-------C-CCCHHHHHHHHHH-CCCCEEEECCCC
T ss_conf 66898999999998599899874375545658-----------99-------8-6699999999972-899989649999
Q ss_pred C-HHHHHHHHHHCCCEEHHHHHHHHHHCC--------C-----HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8-899999998388852334799998414--------6-----68999999999999999999808985
Q gi|254781020|r 269 N-GVDILKSIILGASLGGLASPFLKPAMD--------S-----SDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 269 ~-g~Dv~kAlalGAdaV~iGr~~l~~~~~--------G-----~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
. -.|+-|++.+|=.=|-++|-+..+... . .+-....++.+++..+..|.+.|+.+
T Consensus 211 ~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~~~~d~~~~~~~~~~a~~e~v~~~i~~fGS~g 279 (281)
T PRK06806 211 ISPEDFKQCIQHGIRKINVATATFNNVITAVNNLVLNTPYSDYFTYHQDVIKAAYENVKKHMQIFGSEN 279 (281)
T ss_pred CCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999986983898675789999999999986089888689879999999999999999978898
No 317
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=86.90 E-value=1.9 Score=20.96 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=63.4
Q ss_pred HHCCCCEEEEECCCCCCHHHHHHHHH----CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf 87399717850478668899999997----69979994588886510012310234432324431063468899999852
Q gi|254781020|r 180 SAMDVPLLLKEVGCGLSSMDIELGLK----SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY 255 (337)
Q Consensus 180 ~~~~~pii~k~v~~~~~~~~~~~a~~----aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~ 255 (337)
...+.|+++|- +-..+.+++..++| .|-..+++--+|-.+... .+| ... -+.+++.+++.
T Consensus 149 G~~~kPvLLKR-g~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~--~TR--------ntL-----Di~aV~~~kq~ 212 (286)
T COG2876 149 GRQNKPVLLKR-GLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEK--ATR--------NTL-----DISAVPILKQE 212 (286)
T ss_pred CCCCCCEEEEC-CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCC--------CEE-----CHHHHHHHHHH
T ss_conf 35599769724-741249999999999996799957997144334555--666--------422-----36888888761
Q ss_pred CCCCEEEECCCCCCHHH------HHHHHHHCCCEEHHHH-H-HHHHHCCCHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 28987997298888899------9999983888523347-9-999841466899-99999999999999998
Q gi|254781020|r 256 CNEAQFIASGGLRNGVD------ILKSIILGASLGGLAS-P-FLKPAMDSSDAV-VAAIESLRKEFIVSMFL 318 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~D------v~kAlalGAdaV~iGr-~-~l~~~~~G~~gv-~~~l~~l~~el~~~m~~ 318 (337)
...|||+|=-=.+|.+ +-.|+|+|||.+|+-- | --.++-+++.-+ -.-++.|.++++..-..
T Consensus 213 -THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~~ 283 (286)
T COG2876 213 -THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALADA 283 (286)
T ss_pred -CCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -57877987877655313578889999861677369996479543457600017999999999999877654
No 318
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=86.33 E-value=2.1 Score=20.78 Aligned_cols=111 Identities=16% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCCCHHHHHHH-HHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 86688999999-97699799945--8-88865100123102344323244310634688999998522898799729888
Q gi|254781020|r 193 CGLSSMDIELG-LKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR 268 (337)
Q Consensus 193 ~~~~~~~~~~a-~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr 268 (337)
..++|+.++.. .+.|+|.+-++ | ||--. ... +.+ ....|.++++. .++|+..=||=-
T Consensus 146 ~~T~peea~~Fv~~TgvD~LAvaiGn~HG~yk----------~~~-------p~L-~~~~L~~I~~~-~~vPLVlHGgSG 206 (276)
T cd00947 146 LLTDPEEAEEFVEETGVDALAVAIGTSHGAYK----------GGE-------PKL-DFDRLKEIAER-VNVPLVLHGGSG 206 (276)
T ss_pred CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC----------CCC-------CCC-CHHHHHHHHHH-CCCCEEEECCCC
T ss_conf 34899999999998598878764164344568----------999-------864-88999999997-399879757999
Q ss_pred CH-HHHHHHHHHCCCEEHHHHHHHHHHC--------CC------HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88-9999999838885233479999841--------46------6899999999999999999980898
Q gi|254781020|r 269 NG-VDILKSIILGASLGGLASPFLKPAM--------DS------SDAVVAAIESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 269 ~g-~Dv~kAlalGAdaV~iGr~~l~~~~--------~G------~~gv~~~l~~l~~el~~~m~~~G~~ 322 (337)
.+ .++-|++.+|-.=|-++|-+..+.. .. ..-.....+.+++..+..|.+.|..
T Consensus 207 ~~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~r~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~lfGS~ 275 (276)
T cd00947 207 IPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAENPKEFDPRKYLAPAIEAVKEVVKHKMELFGSA 275 (276)
T ss_pred CCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999984975998673899999999999998688867979999999999999999999985899
No 319
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=86.18 E-value=2.1 Score=20.73 Aligned_cols=89 Identities=17% Similarity=0.126 Sum_probs=42.2
Q ss_pred HHCCCCEEEE-ECCCCCCHHHHHHHHH----CC-CCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf 8739971785-0478668899999997----69-9799945888865100123102344323244310634688999998
Q gi|254781020|r 180 SAMDVPLLLK-EVGCGLSSMDIELGLK----SG-IRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR 253 (337)
Q Consensus 180 ~~~~~pii~k-~v~~~~~~~~~~~a~~----aG-ad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~ 253 (337)
...+.||++| +.+ -|.+.+..|+| .| -..|++--+|=.|.- ..+.+-.+ +.+++-++
T Consensus 129 G~~~KPVLLKRG~~--aTi~EwL~AAEYIl~~GsN~~ViLCERGIRTfE----------~~TR~TLD-----~saV~~~K 191 (262)
T TIGR01361 129 GKQGKPVLLKRGMG--ATIEEWLEAAEYILSEGSNGNVILCERGIRTFE----------KSTRNTLD-----LSAVPLLK 191 (262)
T ss_pred HHCCCCEEEECCCC--HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC----------CHHHHHHH-----HHHHHHHH
T ss_conf 22379755307721--589999999999984688995489975856763----------00245333-----78999998
Q ss_pred HHCCCCEEEECCCCCCHH-H-----HHHHHHHCCCEEHH
Q ss_conf 522898799729888889-9-----99999838885233
Q gi|254781020|r 254 PYCNEAQFIASGGLRNGV-D-----ILKSIILGASLGGL 286 (337)
Q Consensus 254 ~~~~~v~IiadGGIr~g~-D-----v~kAlalGAdaV~i 286 (337)
+. ...|||.|=-=-+|. | +-.|+|.|||.++|
T Consensus 192 ~~-tHLPi~VDPSH~~GrRdLV~plA~AA~A~GADgl~i 229 (262)
T TIGR01361 192 KE-THLPIIVDPSHAAGRRDLVLPLAKAAIAAGADGLMI 229 (262)
T ss_pred HC-CCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 60-589878718798762457889999989757473689
No 320
>PRK06801 hypothetical protein; Provisional
Probab=86.03 E-value=2.2 Score=20.68 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCCHHHHHHH-HHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 6688999999-97699799945--8-888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 194 GLSSMDIELG-LKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 194 ~~~~~~~~~a-~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
.++|+.++.. .+.|+|.+-++ | ||--. +.| -+ ..+.|.++++. .++|+..=||=-.
T Consensus 155 ~T~peea~~Fv~~TgvD~LAvaiGn~HG~yk-----------~~p-------~L-~~~~L~~I~~~-~~vPLVLHGgSGi 214 (286)
T PRK06801 155 FTDPAIARDFVDRTGIDALAVAIGNAHGKYK-----------GEP-------KL-DFARLAAIHQQ-TGLPLVLHGGSGI 214 (286)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCCCCCCCC-----------CCC-------CC-CHHHHHHHHHH-CCCCEEEECCCCC
T ss_conf 6899999999998699899752254556768-----------988-------67-99999999985-2999897799999
Q ss_pred H-HHHHHHHHHCCCEEHHHHHHHHHHCCC--------------HHH-HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8-999999983888523347999984146--------------689-99999999999999999808985
Q gi|254781020|r 270 G-VDILKSIILGASLGGLASPFLKPAMDS--------------SDA-VVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g-~Dv~kAlalGAdaV~iGr~~l~~~~~G--------------~~g-v~~~l~~l~~el~~~m~~~G~~~ 323 (337)
+ .|+-+++.+|-.=|-++|-+-++...+ ..- .....+.+++..+..|.++|..+
T Consensus 215 ~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~~~~~d~~~~l~~~~~~a~k~vv~~ki~lfGS~g 284 (286)
T PRK06801 215 SDTDFRRAISLGIHKINFYTGMSQAALAAVEQKMTHRHAIYDEFAELFLGIEEAISDTVAQQMRIFGSSE 284 (286)
T ss_pred CHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999999997797699828689999999999999868876795899879999999999999999978798
No 321
>TIGR00875 talC transaldolase, putative; InterPro: IPR004731 Transaldolase (2.2.1.2 from EC) catalyzes the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 Kd whose sequence has been well conserved throughout evolution. A lysine has been implicated in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate. Transaldolase is evolutionary related to a bacterial protein of about 20 Kd (known as talC in Escherichia coli), whose exact function is not yet known.; GO: 0005975 carbohydrate metabolic process.
Probab=86.01 E-value=2.2 Score=20.68 Aligned_cols=99 Identities=16% Similarity=0.243 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH-HCCCCEEEECCCCCCHHH
Q ss_conf 6688999999976997999458888651001231023443232443106346889999985-228987997298888899
Q gi|254781020|r 194 GLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP-YCNEAQFIASGGLRNGVD 272 (337)
Q Consensus 194 ~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~-~~~~v~IiadGGIr~g~D 272 (337)
+-++.-+..|++|||..+. =.-| | ++- ..+.|+..++.+..+-+ ..-+-.||+.+ ||++.+
T Consensus 112 vfsa~QaLlAA~AGA~YVs--Pfvg---------R-lDd-----igg~G~~li~e~~~i~~~h~~~t~vi~AS-~rhP~h 173 (216)
T TIGR00875 112 VFSAAQALLAAKAGATYVS--PFVG---------R-LDD-----IGGDGLKLIEEVKTIFENHALDTEVIAAS-VRHPRH 173 (216)
T ss_pred EECHHHHHHHHHCCCCEEC--CHHH---------H-HHH-----CCCCHHHHHHHHHHHHHHCCCCCEEEEEE-CCCHHH
T ss_conf 2354589999981891424--4011---------0-131-----27750578999999997308764266540-237178
Q ss_pred HHHHHHHCCCEEHHHHHHHHHHCCC---HHHHHHHHHHHHH
Q ss_conf 9999983888523347999984146---6899999999999
Q gi|254781020|r 273 ILKSIILGASLGGLASPFLKPAMDS---SDAVVAAIESLRK 310 (337)
Q Consensus 273 v~kAlalGAdaV~iGr~~l~~~~~G---~~gv~~~l~~l~~ 310 (337)
|+.++..||+.+.+=-........- ..|+++++..|.+
T Consensus 174 vle~al~Ga~~~t~p~~V~~~l~~~P~~~~~lE~F~~DW~~ 214 (216)
T TIGR00875 174 VLEAALIGADIATLPLDVMQQLLNHPLTDIGLERFLKDWNA 214 (216)
T ss_pred HHHHHHHCCCEEECCHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999706554405789999985075357888877754631
No 322
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=85.90 E-value=2.2 Score=20.64 Aligned_cols=109 Identities=9% Similarity=-0.025 Sum_probs=65.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 99999999873997178504786688-99999997699799945888865100123102344323244310634688999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
.+.+...-...+..++- .|...++ +.+..|.+..+|+|-+|...|..-. -.+.+..++
T Consensus 20 ~~iva~~l~~~GfeVi~--lG~~~~pe~~v~~A~~~~ad~igiSsl~G~~~~-------------------~~~~l~~~l 78 (137)
T PRK02261 20 NKILDRALTEAGFEVIN--LGVMTSQEEFIDAAIETDADAILVSSLYGHGEI-------------------DCRGLREKC 78 (137)
T ss_pred HHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCH-------------------HHHHHHHHH
T ss_conf 99999999978974984--688799999999998739999997111126612-------------------799999999
Q ss_pred HHHHHCCCCEEEECCCCC-----CHHHHHHHHHHCCCEEHH-HHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 998522898799729888-----889999999838885233-479999841466899999999999999
Q gi|254781020|r 251 MARPYCNEAQFIASGGLR-----NGVDILKSIILGASLGGL-ASPFLKPAMDSSDAVVAAIESLRKEFI 313 (337)
Q Consensus 251 ~~~~~~~~v~IiadGGIr-----~g~Dv~kAlalGAdaV~i-Gr~~l~~~~~G~~gv~~~l~~l~~el~ 313 (337)
..+ -..+++|+.-|.|- -..|.-+...+|.++|+- |+++- ..++.++++|+
T Consensus 79 ~~~-g~~di~vvvGG~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~~~-----------~ii~~i~~~l~ 135 (137)
T PRK02261 79 IEA-GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFAPGTDLE-----------EVIDDLKADLN 135 (137)
T ss_pred HHC-CCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHH-----------HHHHHHHHHHH
T ss_conf 967-9999969983621678878399999999779798879788999-----------99999999863
No 323
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=85.66 E-value=2.2 Score=20.58 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=65.6
Q ss_pred CCCHHHHHHH-HHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEE--CCCCC
Q ss_conf 6688999999-97699799945--8888651001231023443232443106346889999985228987997--29888
Q gi|254781020|r 194 GLSSMDIELG-LKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIA--SGGLR 268 (337)
Q Consensus 194 ~~~~~~~~~a-~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~Iia--dGGIr 268 (337)
.++|++++.. .+.|+|.+-++ |..|.- .+.| --....|.++++. .++|+.. .+|+
T Consensus 155 ~T~pe~a~~Fv~~TgvD~LAvaiGn~HG~y----------k~~p--------~l~~~~l~~i~~~-~~vPLVLHGgSG~- 214 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALGSVHGPY----------KGEP--------NLGFAEMEQVRDF-TGVPLVLHGGTGI- 214 (285)
T ss_pred CCCHHHHHHHHHHHCCCEEEHHHCCCCCCC----------CCCC--------CCCHHHHHHHHHC-CCCCEEEECCCCC-
T ss_conf 579999999997318788842205555776----------8988--------7669999999840-5998796499999-
Q ss_pred CHHHHHHHHHHCCCEEHHHHHHHHHHC--------CC------HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 889999999838885233479999841--------46------68999999999999999999808985
Q gi|254781020|r 269 NGVDILKSIILGASLGGLASPFLKPAM--------DS------SDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 269 ~g~Dv~kAlalGAdaV~iGr~~l~~~~--------~G------~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
.-.|+-|++.+|-.=|.++|-+-.+.. .. ..-+....+.+++.++..|.+.|+.+
T Consensus 215 ~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~~~~l~~~~~~~dp~~~~~~~~~a~~~~v~~ki~~fGS~g 283 (285)
T PRK07709 215 PTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNG 283 (285)
T ss_pred CHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999859859998828899999999999973976479799999999999999999999848898
No 324
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=85.43 E-value=2.3 Score=20.51 Aligned_cols=110 Identities=15% Similarity=0.105 Sum_probs=68.0
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 668899999-997699799945--8-888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
.++|+.++. ..+.|+|++-++ | ||--. +. +.+ ..+.|.++++. .++|+..=||=-.
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk-----------~~-------p~L-~~d~L~~I~~~-~~iPLVLHGgSG~ 213 (284)
T PRK12737 154 YTNPDAAAEFVERTGIDSLAVAIGTAHGLYK-----------GE-------PKL-DFDRLEEIREK-VSIPLVLHGASGV 213 (284)
T ss_pred CCCHHHHHHHHHHHCCCEEEECCCCCCCCCC-----------CC-------CCC-CHHHHHHHHHH-CCCCEEEECCCCC
T ss_conf 1799999999999698987000375356759-----------99-------857-89999999986-3999896689999
Q ss_pred H-HHHHHHHHHCCCEEHHHHHHHHHH--------CCCHH------HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8-999999983888523347999984--------14668------999999999999999999808985
Q gi|254781020|r 270 G-VDILKSIILGASLGGLASPFLKPA--------MDSSD------AVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g-~Dv~kAlalGAdaV~iGr~~l~~~--------~~G~~------gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
+ .|+-||+.+|-.=|-++|-+-.+. ...++ -+....+.+++-++..|.++|+.+
T Consensus 214 ~~e~i~~ai~~Gi~KiNi~T~l~~a~~~~~~~~l~~~p~~~d~~~~~~~~~~a~~e~v~~ki~l~GS~g 282 (284)
T PRK12737 214 PDEDVKKAISLGICKVNVATELKIAFSDAVKKYFYENPKANDPRKYMTPGKEAMKEVVRHKIKVCGSEG 282 (284)
T ss_pred CHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999779589985858999999999999987878689699999999999999999999858999
No 325
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=85.23 E-value=2.4 Score=20.45 Aligned_cols=214 Identities=14% Similarity=0.090 Sum_probs=103.9
Q ss_pred HHHHHHHHHHCCEEECCCCHHHHCCHHHHHHHH-HHHHCCCHHHHHCC-CCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 999999998099066052022112866888999-99866401232202-7521236799899998776508985762532
Q gi|254781020|r 77 RNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFE-LRQYAPHTVLISNL-GAVQLNYDFGVQKAHQAVHVLGADGLFLHLN 154 (337)
Q Consensus 77 ~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (337)
.++-.+|.+.+.|..+.........-....... +...+.. +++ -...++...+.+...++.+ .++..+.+..+
T Consensus 30 ~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~----~~VPV~lHLDH~~~~e~~~~ai~-~GftSVM~DgS 104 (283)
T pfam01116 30 NAVLEAAEEANSPVIIQVSPGAAKYAGAEALAAMVRAAAEK----YSVPVALHLDHGASFEGILEAIE-AGFSSVMIDGS 104 (283)
T ss_pred HHHHHHHHHHCCCEEEECCCCHHHHCCHHHHHHHHHHHHHH----CCCCEEEECCCCCCHHHHHHHHH-HCCCEEEEECC
T ss_conf 99999999969999999684467558999999999999997----79989996677799999999998-19986986389
Q ss_pred CHHHHHHHCCCCCHHHHHHHHH---HHHHHCCCCEEE---EE------------CCCCCCHHHHHH-HHHCCCCEEEECC
Q ss_conf 0356652068852430799999---999873997178---50------------478668899999-9976997999458
Q gi|254781020|r 155 PLQEIIQPNGNTNFADLSSKIA---LLSSAMDVPLLL---KE------------VGCGLSSMDIEL-GLKSGIRYFDIAG 215 (337)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~i~---~l~~~~~~pii~---k~------------v~~~~~~~~~~~-a~~aGad~i~v~~ 215 (337)
.. .++.-....+ .+....+.++=. .. -...++|+.++. ..+.|+|.+-++.
T Consensus 105 ~l----------~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvai 174 (283)
T pfam01116 105 HL----------PFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSEDEALYTDPEEAKEFVERTGVDSLAVAI 174 (283)
T ss_pred CC----------CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 79----------99999999999999998739848997500367566767776322258999999999986988787643
Q ss_pred --CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH-HHHHHHHHHCCCEEHHHHHHHH
Q ss_conf --8886510012310234432324431063468899999852289879972988888-9999999838885233479999
Q gi|254781020|r 216 --RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG-VDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 216 --~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g-~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
..|.- .... +.+ ..+.|.++++. .++|+..=||=-.+ .|+-|++.+|-.=|.++|-+..
T Consensus 175 G~~HG~y---------k~~~-------p~L-~~~~L~~I~~~-~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 236 (283)
T pfam01116 175 GNVHGVY---------KPLE-------PKL-DFDRLKEIQAA-VDVPLVLHGGSGVPDEEIRKAIKLGVAKINIDTDLQW 236 (283)
T ss_pred CCCCCCC---------CCCC-------CCC-CHHHHHHHHHH-CCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHH
T ss_conf 6534446---------8999-------866-99999999987-3998786589999999999999839669985759999
Q ss_pred HHC--------CCH------HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 841--------466------8999999999999999999808985
Q gi|254781020|r 293 PAM--------DSS------DAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 293 ~~~--------~G~------~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
+.. ..+ .-+....+.+++..+..|.+.|..+
T Consensus 237 a~~~~~r~~l~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~fGs~g 281 (283)
T pfam01116 237 AFTKAVREYLAENPGNYDPRKYLRPAREAMKEVVKEKIRLFGSAG 281 (283)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999986978689899999999999999999999968898
No 326
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=83.59 E-value=2.8 Score=20.02 Aligned_cols=110 Identities=15% Similarity=0.074 Sum_probs=67.6
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 668899999-997699799945--8-888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
.++|+.++. ..+.|+|.+-++ | ||--. +.| --....|.++++. .++|+..=||=-.
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk-----------~~p--------~L~~~~L~~I~~~-~~vPLVLHGgSG~ 213 (284)
T PRK09195 154 YTDPAQAREFVEATGIDSLAVAIGTAHGMYK-----------SAP--------KLDFDRLENIRQW-VNIPLVLHGASGL 213 (284)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCC-----------CCC--------CCCHHHHHHHHHH-HCCCEEEECCCCC
T ss_conf 6899999999997599889865065455558-----------988--------4599999999997-4999898789998
Q ss_pred H-HHHHHHHHHCCCEEHHHHHHHHHHC--------CCH------HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8-9999999838885233479999841--------466------8999999999999999999808985
Q gi|254781020|r 270 G-VDILKSIILGASLGGLASPFLKPAM--------DSS------DAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g-~Dv~kAlalGAdaV~iGr~~l~~~~--------~G~------~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
+ .|+-|++.+|-.=|.++|-+-.+.. ..+ .-+....+.+++..+..|.++|+.+
T Consensus 214 ~~e~i~~ai~~Gv~KiNi~T~l~~a~~~~~r~~l~~~p~~~dp~~~~~~~~~a~~~~v~~~i~~~GS~g 282 (284)
T PRK09195 214 PTKDIQQTIKLGICKVNVATELKIAFSQALKNYLTEHPEANDPRHYLQPAKAAMKDVVSKVIADCGCEG 282 (284)
T ss_pred CHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999999999849769986858999999999999986879688699999999999999999999968898
No 327
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=83.38 E-value=2.8 Score=19.97 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHH-CCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC-
Q ss_conf 668899999997-699799945--8888651001231023443232443106346889999985228987997298888-
Q gi|254781020|r 194 GLSSMDIELGLK-SGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN- 269 (337)
Q Consensus 194 ~~~~~~~~~a~~-aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~- 269 (337)
.++++.++..++ .|.|.+-++ |..|. +.-++.--.+..|.++++... +|+..-||=-.
T Consensus 155 ~tdp~ea~~fv~~tgiD~LA~aiGn~HG~-----------------Yk~~~p~L~f~~L~~i~~~~~-~PlVlHGgSGip 216 (286)
T COG0191 155 LTDPEEALEFVERTGIDALAAAIGNVHGV-----------------YKPGNPKLDFDRLKEIQEAVS-LPLVLHGGSGIP 216 (286)
T ss_pred HCCHHHHHHHHHCCCCCEEEEECCCCCCC-----------------CCCCCCCCCHHHHHHHHHHHC-CCEEEECCCCCC
T ss_conf 07999999998612866561100356667-----------------889999889799999999858-987976799999
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHHHCCC--------------HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8999999983888523347999984146--------------68999999999999999999808985
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKPAMDS--------------SDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~~~~G--------------~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
-.|+-||+-+|-.=|-+.|-+-++...+ ..-+....+.+++-.+.-|..+|+.+
T Consensus 217 ~eeI~~aI~~GV~KvNi~Td~~~A~~~avr~~~~~~~k~~DpR~~l~~a~~am~~~v~~~~~~fgs~g 284 (286)
T COG0191 217 DEEIREAIKLGVAKVNIDTDLQLAFTAAVREYLAENPKEYDPRKYLKPAIEAMKEVVKEKIKEFGSAG 284 (286)
T ss_pred HHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999729558854727799999999999984835479799978999999999999999847568
No 328
>KOG3111 consensus
Probab=83.15 E-value=2.9 Score=19.92 Aligned_cols=128 Identities=17% Similarity=0.136 Sum_probs=68.5
Q ss_pred HHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC----CCCC
Q ss_conf 508985762532035665206885243079999999987399717850478668899999997699799945----8888
Q gi|254781020|r 143 VLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA----GRGG 218 (337)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~----~~gG 218 (337)
..+++..-+|....+ .+...++.+++. +..+-+- +.-.+..+++....+ -+|-+.|= |.||
T Consensus 85 ~agas~~tfH~E~~q------------~~~~lv~~ir~~-gmk~G~a-lkPgT~Ve~~~~~~~-~~D~vLvMtVePGFGG 149 (224)
T KOG3111 85 KAGASLFTFHYEATQ------------KPAELVEKIREK-GMKVGLA-LKPGTPVEDLEPLAE-HVDMVLVMTVEPGFGG 149 (224)
T ss_pred HCCCCEEEEEEEECC------------CHHHHHHHHHHC-CCEEEEE-ECCCCCHHHHHHHHH-HCCEEEEEEECCCCCH
T ss_conf 647756999864325------------789999999974-9756687-489995899997641-0257999985489750
Q ss_pred CCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC---CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHC
Q ss_conf 65100123102344323244310634688999998522---898799729888889999999838885233479999841
Q gi|254781020|r 219 TSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC---NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAM 295 (337)
Q Consensus 219 ~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~---~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~ 295 (337)
..+ +.+.++.+..++ ....|-.|||+- ..-+-|+..+||+..-.|+++..+..
T Consensus 150 QkF-----------------------me~mm~KV~~lR~kyp~l~ieVDGGv~-p~ti~~~a~AGAN~iVaGsavf~a~d 205 (224)
T KOG3111 150 QKF-----------------------MEDMMPKVEWLREKYPNLDIEVDGGVG-PSTIDKAAEAGANMIVAGSAVFGAAD 205 (224)
T ss_pred HHH-----------------------HHHHHHHHHHHHHHCCCCEEEECCCCC-CCHHHHHHHCCCCEEEECCEEECCCC
T ss_conf 457-----------------------899989999999868984388548868-21377998758887986333452799
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 4668999999999999999
Q gi|254781020|r 296 DSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 296 ~G~~gv~~~l~~l~~el~~ 314 (337)
+ ..++..|+++...
T Consensus 206 --~---~~vi~~lr~~v~~ 219 (224)
T KOG3111 206 --P---SDVISLLRNSVEK 219 (224)
T ss_pred --H---HHHHHHHHHHHHH
T ss_conf --8---9999999999866
No 329
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=82.29 E-value=3.1 Score=19.72 Aligned_cols=157 Identities=11% Similarity=-0.024 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHH---HHHCCCCEEEEEC---CCCCCH------------H
Q ss_conf 998776508985762532035665206885243079999999---9873997178504---786688------------9
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALL---SSAMDVPLLLKEV---GCGLSS------------M 198 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l---~~~~~~pii~k~v---~~~~~~------------~ 198 (337)
..++....|++++.+-+....+.. . .-..-..+++++ +..-+.|+++-.+ ..+.+. +
T Consensus 116 sa~riK~~G~~avK~Lvy~~~D~~-e----~neqk~a~ierigsec~aedi~f~lE~ltyd~~~~d~~eyak~kp~kV~~ 190 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRSDED-E----INEQKLAYIERIGSECHAEDLPFFLEPLTYDPRIGDKEEYAKRKPQKVIE 190 (306)
T ss_pred CHHHHHHHCCCCEEEEEEECCCCH-H----HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCHHHHHH
T ss_conf 789998716661689999748961-7----76999999999877750068751676530387778868887406598999
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH--CCCCE-EEECCCCCC---HHH
Q ss_conf 999999769979994588886510012310234432324431063468899999852--28987-997298888---899
Q gi|254781020|r 199 DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY--CNEAQ-FIASGGLRN---GVD 272 (337)
Q Consensus 199 ~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~--~~~v~-IiadGGIr~---g~D 272 (337)
.++...+.|+|..-|--.+- ..+ ++.+++...... ...+| |+.+.|+.. -.-
T Consensus 191 a~k~fsd~GadvlKvevPvy-------------------veG---e~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~t 248 (306)
T COG3684 191 AMKEFSDSGADVLKVEVPVY-------------------VEG---EQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRT 248 (306)
T ss_pred HHHHHCCCCCCEEEEECCEE-------------------CCC---CCHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHH
T ss_conf 99984337875698623300-------------------267---61999999987404778986988467667775899
Q ss_pred HHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCC
Q ss_conf 9999983888523347999984146689999999999999999998089857896149
Q gi|254781020|r 273 ILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYLN 330 (337)
Q Consensus 273 v~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~ 330 (337)
+.-|+..||+.|.-||+.|..... .=.++.|.++.-.|+.+|+||+..
T Consensus 249 v~fA~eaGAsGvL~GRAtWa~~v~----------~g~d~~re~Lrt~g~~ni~eL~~v 296 (306)
T COG3684 249 VRFAMEAGASGVLAGRATWAGVVE----------QGEDAAREWLRTVGFPNLDELNKV 296 (306)
T ss_pred HHHHHHCCCCEEEECHHHHHCCCC----------CCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999997388606743234412200----------395789999986153228999999
No 330
>KOG0134 consensus
Probab=82.17 E-value=3.2 Score=19.69 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=76.3
Q ss_pred HHHHHHHHCCCEEEECCCCHH----HHHHHCCCCC--HHH--------HHHHHHHHHHHCCCC-EEEEECC---------
Q ss_conf 998776508985762532035----6652068852--430--------799999999873997-1785047---------
Q gi|254781020|r 137 AHQAVHVLGADGLFLHLNPLQ----EIIQPNGNTN--FAD--------LSSKIALLSSAMDVP-LLLKEVG--------- 192 (337)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~--------~~~~i~~l~~~~~~p-ii~k~v~--------- 192 (337)
++++.-+.++|.+++|..+.- -.....+++. +.+ ..+.++.+++..+.. +.+.+++
T Consensus 179 Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~ 258 (400)
T KOG0134 179 AAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGI 258 (400)
T ss_pred HHHHHHHCCCCEEEEECCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHCCC
T ss_conf 99989863887589823541223333168778764435760654010318999999986051143478258334433266
Q ss_pred -CCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf -8668899999997699799945888865100123102344323244310634688999998522898799729888889
Q gi|254781020|r 193 -CGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGV 271 (337)
Q Consensus 193 -~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~ 271 (337)
.-..+..+....+-|.|.+-++ ||.-..-.+...+-.+.+. ....-+...+- .+.+..+.-|-+.||.++..
T Consensus 259 t~d~~~~~~~~y~~~g~df~~l~--~g~~~~~~h~i~~R~~~~~--~~~~~~~f~e~---~r~~~kgt~v~a~g~~~t~~ 331 (400)
T KOG0134 259 TIDDAIKMCGLYEDGGLDFVELT--GGTFLAYVHFIEPRQSTIA--REAFFVEFAET---IRPVFKGTVVYAGGGGRTRE 331 (400)
T ss_pred CCCCHHHHHHHHHHCCCCHHHCC--CCHHHHHHHHCCCCCCCCC--CCCCHHHHHHH---HHHHHCCCEEEECCCCCCHH
T ss_conf 54424888999985354301215--7304343110230114553--20201335567---77875686897258745789
Q ss_pred HHHHHHHHCCC-EEHHHHHHHH
Q ss_conf 99999983888-5233479999
Q gi|254781020|r 272 DILKSIILGAS-LGGLASPFLK 292 (337)
Q Consensus 272 Dv~kAlalGAd-aV~iGr~~l~ 292 (337)
.+.+|+-.|.. .|++||+|+.
T Consensus 332 ~~~eav~~~~T~~ig~GR~f~a 353 (400)
T KOG0134 332 AMVEAVKSGRTDLIGYGRPFLA 353 (400)
T ss_pred HHHHHHHCCCCEEEEECCHHCC
T ss_conf 9999985577506873412203
No 331
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=82.15 E-value=3.2 Score=19.69 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=63.5
Q ss_pred HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHHHHHHHHCCCCEEEEC----C
Q ss_conf 76508985762532035665206885243079999999987399717850478668-899999997699799945----8
Q gi|254781020|r 141 VHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLS-SMDIELGLKSGIRYFDIA----G 215 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~-~~~~~~a~~aGad~i~v~----~ 215 (337)
....+++.+.+|..... .....++.+|+. +....+ +-|..+ .+....... -+|.+.+= |
T Consensus 77 ~~~~g~d~it~H~Ea~~------------~~~~~i~~Ik~~-g~k~Gl--AlnP~T~i~~~~~~l~-~vD~VLvMtV~PG 140 (210)
T PRK08005 77 LAAIRPGWIFIHAESVQ------------NPSEILADIRAI-GAKAGL--ALNPATPLLPYRYLAL-QLDALMIMTSEPD 140 (210)
T ss_pred HHHCCCCEEEEECCCCC------------CHHHHHHHHHHC-CCEEEE--EECCCCCHHHHHHHHH-CCCEEEEEEECCC
T ss_conf 99729985999356776------------999999999974-980788--8379998799873040-0798999877899
Q ss_pred CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 888651001231023443232443106346889999985228987997298888899999998388852334799998
Q gi|254781020|r 216 RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 216 ~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.+|..... ....-+.+.++...+..|..||||.... +-+...+|||.+-+||++...
T Consensus 141 f~GQ~Fi~--------------------~~~~KI~~~r~~~~~~~I~vDGGIn~~t-~~~~~~aGad~~V~GSaiF~~ 197 (210)
T PRK08005 141 GRGQQFIA--------------------AMCEKVSQSREHFPAAECWADGGITLRA-ARLLAAAGAQHLVIGRALFTT 197 (210)
T ss_pred CCCCCCCH--------------------HHHHHHHHHHHHCCCCCEEEECCCCHHH-HHHHHHCCCCEEEECHHHHCC
T ss_conf 98721178--------------------8999999999628778889978878899-999998699999979065369
No 332
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=81.84 E-value=3.3 Score=19.62 Aligned_cols=69 Identities=6% Similarity=-0.124 Sum_probs=36.9
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEE---EECCCCCCHHHHH
Q ss_conf 9999999769979994588886510012310234432324431063468899999852289879---9729888889999
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQF---IASGGLRNGVDIL 274 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~I---iadGGIr~g~Dv~ 274 (337)
+-++...++|||+|.+-+.. ..+.+...... -++|+ +..||-.-.-..-
T Consensus 170 ~Ra~aY~eAGAD~if~ea~~---------------------------~~ee~~~~~~~-~~~Pll~n~~e~g~tP~~s~~ 221 (292)
T PRK11320 170 ERAQAYVEAGADMIFPEAIT---------------------------ELDMYRRFADA-VKVPILANITEFGATPLFTTE 221 (292)
T ss_pred HHHHHHHHCCCCEEECCCCC---------------------------CHHHHHHHHHH-CCCCEEEEECCCCCCCCCCHH
T ss_conf 99999997799899417899---------------------------99999999997-799989984899999887999
Q ss_pred HHHHHCCCEEHHHHHHHHHH
Q ss_conf 99983888523347999984
Q gi|254781020|r 275 KSIILGASLGGLASPFLKPA 294 (337)
Q Consensus 275 kAlalGAdaV~iGr~~l~~~ 294 (337)
+.-.+|-+.|-..-..+.++
T Consensus 222 el~~lG~~~viyp~~~lraa 241 (292)
T PRK11320 222 ELASAGVAMVLYPLSAFRAM 241 (292)
T ss_pred HHHHCCCCEEEECCHHHHHH
T ss_conf 99977998999886999999
No 333
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=81.50 E-value=1.1 Score=22.38 Aligned_cols=170 Identities=13% Similarity=0.015 Sum_probs=85.6
Q ss_pred HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC---C---CCHH-------HHHHHH---
Q ss_conf 76508985762532035665206885243079999999987399717850478---6---6889-------999999---
Q gi|254781020|r 141 VHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGC---G---LSSM-------DIELGL--- 204 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~---~---~~~~-------~~~~a~--- 204 (337)
....|+|++-+-+-...+......+ .-..+.+.+-.-+...+.|+++-.+.- . .+.+ .+..++
T Consensus 114 ik~~GadAvK~L~yy~pD~~~~in~-~k~~~Verig~eC~~~dipf~lE~l~Y~~~~~~~~~~eya~~Kp~~V~~~~kef 192 (324)
T PRK12399 114 IKEEGADAVKFLLYYDVDEDDEINE-QKKAYIERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVF 192 (324)
T ss_pred HHHCCCCEEEEEEEECCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHCHHHHHHHHHHH
T ss_conf 9970657388999977999778889-999999999999997699715765113677778766889876648999999997
Q ss_pred ---HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH---HHHHHCCCCE-EEECCCCCCH---HHHH
Q ss_conf ---7699799945888865100123102344323244310634688999---9985228987-9972988888---9999
Q gi|254781020|r 205 ---KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE---MARPYCNEAQ-FIASGGLRNG---VDIL 274 (337)
Q Consensus 205 ---~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~---~~~~~~~~v~-IiadGGIr~g---~Dv~ 274 (337)
+-|+|.+-+--..-.. .+.+ . ........+-++.. ++... ..+| |+.+.|+..- .-+-
T Consensus 193 s~~~ygvDvlKvE~Pvn~~--------~veg-~--~~ge~~yt~~ea~~~fke~~~a-~~~Pwv~LSAGV~~~~F~~~l~ 260 (324)
T PRK12399 193 SKPRFNVDVLKVEVPVNMK--------YVEG-F--AEGEVVYTKEEAAQHFKDQDAA-TDLPYIYLSAGVSAELFQETLV 260 (324)
T ss_pred HCCCCCCCEEEEECCCCCC--------CCCC-C--CCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHH
T ss_conf 0335698769861576601--------0135-5--6675211299999999998744-5999799808999899999999
Q ss_pred HHHHHCC--CEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 9998388--852334799998414668999999999999999999808985789614
Q gi|254781020|r 275 KSIILGA--SLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 275 kAlalGA--daV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
-|...|| +.|.-||+.|.. ++..+.+.=...++.++.-.|..+|++|..
T Consensus 261 ~A~~aGa~fsG~L~GRA~W~d------~i~~~~~~g~~~~~~wL~t~g~~~i~~Ln~ 311 (324)
T PRK12399 261 FAHEAGAKFNGVLCGRATWAG------SVKVYIEEGEAAAREWLRTEGFKNIDELNK 311 (324)
T ss_pred HHHHCCCCCCCEEECHHHHHH------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999859973355345888887------876521216899999999886999999999
No 334
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=81.07 E-value=3.5 Score=19.46 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=69.7
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC-
Q ss_conf 9998776508985762532035665206885243079999999987399717850478668899999997699799945-
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA- 214 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~- 214 (337)
...+.....+++.+.+|..... .....++++++. +..+.+-. ...+..+..+...+ -+|.|.+=
T Consensus 76 ~~i~~~~~aGad~i~~H~Ea~~------------~~~~~i~~ik~~-g~k~Glal-nP~T~~~~l~~~l~-~~D~VliMt 140 (223)
T PRK08745 76 RIVPDFADAGATTISFHPEASR------------HVHRTIQLIKSH-GCQAGLVL-NPATPVDILDWVLP-ELDLVLVMS 140 (223)
T ss_pred HHHHHHHHCCCCEEEEEECCCC------------CHHHHHHHHHHC-CCCEEEEE-CCCCCHHHHHHHHH-HCCEEEEEE
T ss_conf 9999999739978999606442------------999999999983-98446774-69998799999886-479899987
Q ss_pred -CC--CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf -88--8865100123102344323244310634688999998-5228987997298888899999998388852334799
Q gi|254781020|r 215 -GR--GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 215 -~~--gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
+. +|..+.. ..+..+..+.+.. ....++.|..||||.. .-+-+...+|||.+-.|+++
T Consensus 141 V~PGf~GQ~f~~-----------------~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~-~ti~~l~~aGad~~V~GSai 202 (223)
T PRK08745 141 VNPGFGGQAFIP-----------------SALDKLRAIRKKIDALGKPIRLEIDGGVKA-DNIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred ECCCCCCCCCCH-----------------HHHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHCCCCEEEECHHH
T ss_conf 569988754568-----------------899999999999986499945999788798-99999998699999974177
Q ss_pred HH
Q ss_conf 99
Q gi|254781020|r 291 LK 292 (337)
Q Consensus 291 l~ 292 (337)
..
T Consensus 203 F~ 204 (223)
T PRK08745 203 FN 204 (223)
T ss_pred HC
T ss_conf 57
No 335
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=80.98 E-value=3.5 Score=19.44 Aligned_cols=111 Identities=11% Similarity=0.106 Sum_probs=68.2
Q ss_pred CCCHHHHHHHH-HCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC-
Q ss_conf 66889999999-7699799945--8888651001231023443232443106346889999985228987997298888-
Q gi|254781020|r 194 GLSSMDIELGL-KSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN- 269 (337)
Q Consensus 194 ~~~~~~~~~a~-~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~- 269 (337)
.++|++++..+ +.|+|.+-++ |..|.- .+ .+.+ ..+.|.++++. .++|+..=||=-.
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGn~HG~y----------~~-------~p~l-~~~~L~~I~~~-~~iPLVLHGgSG~~ 214 (286)
T PRK12738 154 LTDPQEAKRFVELTGVDSLAVAIGTAHGLY----------SK-------TPKI-DFQRLAEIREV-VDVPLVLHGASDVP 214 (286)
T ss_pred CCCHHHHHHHHHHHCCCEEHHHHCCCCCCC----------CC-------CCCC-CHHHHHHHHHC-CCCCEEEECCCCCC
T ss_conf 799999999999879781223323546777----------99-------9947-89999999730-79998976999999
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHHHHC--------CCHH------HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999838885233479999841--------4668------999999999999999999808985
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLKPAM--------DSSD------AVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~~~~--------~G~~------gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
-.|+-|++.+|-.=|.++|-+-.+.. +.++ -+....+.+++-++..|.++|..+
T Consensus 215 ~e~i~~ai~~Gi~KvNi~T~l~~a~~~~~r~~l~~~p~~~dp~~~l~~~~~a~~~~v~~ki~~~GS~g 282 (286)
T PRK12738 215 DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSAN 282 (286)
T ss_pred HHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999769069984858999999999999986978688699999999999999999999849988
No 336
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=80.47 E-value=1.2 Score=22.25 Aligned_cols=171 Identities=13% Similarity=0.065 Sum_probs=88.0
Q ss_pred HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC------CCCHH-------HHHHHHH--
Q ss_conf 76508985762532035665206885243079999999987399717850478------66889-------9999997--
Q gi|254781020|r 141 VHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGC------GLSSM-------DIELGLK-- 205 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~------~~~~~-------~~~~a~~-- 205 (337)
....|+|++-+-+-...+...... ..-..+.+.+-..+...+.|+++-.+.- ..+.+ ....+++
T Consensus 116 ik~~GadAvK~L~yy~pD~~~ein-~~k~a~ve~ig~eC~~~dipf~lE~l~Y~~~~~~~~~~eya~~Kp~~V~~~~kef 194 (326)
T PRK04161 116 LKEAGADAVKFLLYYDVDGDEEIN-LQKQAYIERIGSECTAEDIPFFLELLSYDERISDNNSAAYAKLKPHKVNGAMKVF 194 (326)
T ss_pred HHHHCCCCEEEEEEECCCCCHHHH-HHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHCHHHHHHHHHHH
T ss_conf 998284613799997899987888-9999999999999987799838988510787777667889986738999999996
Q ss_pred ----CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH--CCCCE-EEECCCCCCH---HHHHH
Q ss_conf ----69979994588886510012310234432324431063468899999852--28987-9972988888---99999
Q gi|254781020|r 206 ----SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY--CNEAQ-FIASGGLRNG---VDILK 275 (337)
Q Consensus 206 ----aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~--~~~v~-IiadGGIr~g---~Dv~k 275 (337)
-|+|.+-|--...... .++. ...+.-..+-++...+++. ...+| |+.+.|+..- .-+--
T Consensus 195 s~~~ygvDvlKvE~Pvn~~~--veg~---------~~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~ 263 (326)
T PRK04161 195 SDKRFGVDVLKVEVPVNMAY--VEGF---------TEGEVVYSQEEAIKAFKDQEAATHLPYIYLSAGVSAKLFQETLYF 263 (326)
T ss_pred CCCCCCCCEEEECCCCCCCC--CCCC---------CCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 14456997798526776001--0245---------766541369999999999873539997998399998999999999
Q ss_pred HHHHCCC--EEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 9983888--52334799998414668999999999999999999808985789614
Q gi|254781020|r 276 SIILGAS--LGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 276 AlalGAd--aV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
|...||+ .|.-||+.|.- ++..+.+.=.+.++.++.-.|..+|++|..
T Consensus 264 A~~aGasf~G~L~GRA~W~d------~i~~~~~~g~~~~~~wL~t~g~~~i~~Ln~ 313 (326)
T PRK04161 264 AAEAGAQFNGVLCGRATWAG------SVPVYITKGEEAARKWLCTEGFQNIDELNR 313 (326)
T ss_pred HHHCCCCCCCEEECHHHHHH------HHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99869984567653687776------776411326899999999987999999999
No 337
>PRK01362 putative translaldolase; Provisional
Probab=79.09 E-value=4 Score=19.07 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 99999998739971785047866889999999769979994588886510012310234432324431063468899999
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
+.++.|++. +.++-+ ..+.+..-+..|+.+||+.|..-- | |-.+.. .-|++.+..+...
T Consensus 92 ~ai~~L~~~-Gi~vn~---Tai~s~~Qa~~Aa~aga~yispy~--g---------R~~d~G------~Dg~~~i~~i~~~ 150 (214)
T PRK01362 92 KAVKALSKE-GIKTNV---TLCFSANQALLAAKAGATYVSPFV--G---------RLDDIG------TDGMELIEDIREI 150 (214)
T ss_pred HHHHHHHHC-CCCEEE---EECCCHHHHHHHHHCCCCEEEEEC--C---------HHHHCC------CCHHHHHHHHHHH
T ss_conf 999999984-997576---645889999999875996898631--2---------186558------9828999999999
Q ss_pred -HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCC---CHHHHHHHHHHHH
Q ss_conf -85228987997298888899999998388852334799998414---6689999999999
Q gi|254781020|r 253 -RPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMD---SSDAVVAAIESLR 309 (337)
Q Consensus 253 -~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~---G~~gv~~~l~~l~ 309 (337)
...+.+..|++ ..+|+..++.+++.+||+.|-+.-.++..... -.+++..+.+.|.
T Consensus 151 ~~~~~~~tkIL~-AS~r~~~~i~~a~~~G~~~iTvp~~i~~~l~~~plt~~~~~~F~~Dw~ 210 (214)
T PRK01362 151 YDNYGFETEIIA-ASVRHPMHVLEAALIGADIATIPYKVIKQLFKHPLTDKGLEKFLADWA 210 (214)
T ss_pred HHHCCCCCEEEE-EECCCHHHHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 996399813752-003889999999986999998399999999769337999999999999
No 338
>PRK10693 response regulator of RpoS; Provisional
Probab=78.26 E-value=4.3 Score=18.92 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=7.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 87997298888899999998388
Q gi|254781020|r 259 AQFIASGGLRNGVDILKSIILGA 281 (337)
Q Consensus 259 v~IiadGGIr~g~Dv~kAlalGA 281 (337)
+|||.-.|-.+-.|+++||.+||
T Consensus 80 ~PVIvlTa~~~~~d~v~al~~GA 102 (337)
T PRK10693 80 TPVLVISATENMADIAKALRLGV 102 (337)
T ss_pred CEEEEEECCCCHHHHHHHHHCCC
T ss_conf 64999986899999999997499
No 339
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit; InterPro: IPR005776 This family describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea . The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.; GO: 0008948 oxaloacetate decarboxylase activity, 0006814 sodium ion transport.
Probab=77.71 E-value=4.5 Score=18.82 Aligned_cols=54 Identities=20% Similarity=0.290 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHCC-CCEEEEECCCCCCH---HHH-HHHHHCCCCEEE--ECC-CCCCCCCCHHHH
Q ss_conf 7999999998739-97178504786688---999-999976997999--458-888651001231
Q gi|254781020|r 171 LSSKIALLSSAMD-VPLLLKEVGCGLSS---MDI-ELGLKSGIRYFD--IAG-RGGTSWSRIESH 227 (337)
Q Consensus 171 ~~~~i~~l~~~~~-~pii~k~v~~~~~~---~~~-~~a~~aGad~i~--v~~-~gG~~~~~~~~~ 227 (337)
.-+.++.||+.++ .|+=+ .++.+. +.+ .+|+|||+|.|. +|- .+|++..+.|+.
T Consensus 181 AYELV~alK~~~~n~pvhL---H~H~TtGmA~~AllkA~EAG~d~iDTAisS~S~gtSHPptE~l 242 (616)
T TIGR01108 181 AYELVSALKKEFGNLPVHL---HSHATTGMAEMALLKAIEAGADMIDTAISSMSGGTSHPPTETL 242 (616)
T ss_pred HHHHHHHHHHHCCCEEEEE---ECCCCHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCHHHHH
T ss_conf 9999999974239746886---3247233799999988870788002005523478888747999
No 340
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=76.83 E-value=4.7 Score=18.68 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=62.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 99999999873997178504786688999999976997999458888651001231023443232443106346889999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM 251 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~ 251 (337)
.+.++.|.+ -+.++-+ ..+.+..-+..|.++|++.|..-- | | ..+.|......+.+
T Consensus 91 l~ai~~L~~-~gi~~n~---Tav~s~~Qa~~Aa~aga~yvspf~--G---------R---------i~d~G~d~~~~i~~ 146 (211)
T cd00956 91 LKAIKKLSE-EGIKTNV---TAIFSAAQALLAAKAGATYVSPFV--G---------R---------IDDLGGDGMELIRE 146 (211)
T ss_pred HHHHHHHHH-CCCCEEE---EEECCHHHHHHHHHCCCCEEEEEC--C---------C---------HHHCCCCHHHHHHH
T ss_conf 999999998-5997677---750689999999987997886303--4---------0---------75458985999999
Q ss_pred HHH----HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCC---HHHHHHHHHH
Q ss_conf 985----2289879972988888999999983888523347999984146---6899999999
Q gi|254781020|r 252 ARP----YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDS---SDAVVAAIES 307 (337)
Q Consensus 252 ~~~----~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G---~~gv~~~l~~ 307 (337)
+.. .+.+..|++ ..+|+..++.+++.+|||.+-+.-+++.....- .+++..+.+.
T Consensus 147 ~~~~~~~~~~~tkiL~-AS~R~~~~v~~a~~~G~d~iTip~~vl~~l~~~~~T~~~v~~F~~D 208 (211)
T cd00956 147 IRTIFDNYGFDTKILA-ASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLED 208 (211)
T ss_pred HHHHHHHCCCCEEEEE-EECCCHHHHHHHHHCCCCEEECCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999998299826885-2048899999999869999984999999997690389999999998
No 341
>pfam00834 Ribul_P_3_epim Ribulose-phosphate 3 epimerase family. This enzyme catalyses the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate.
Probab=75.95 E-value=5 Score=18.53 Aligned_cols=117 Identities=18% Similarity=0.104 Sum_probs=62.6
Q ss_pred HHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC--CC--C
Q ss_conf 6508985762532035665206885243079999999987399717850478668899999997699799945--88--8
Q gi|254781020|r 142 HVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA--GR--G 217 (337)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~--~~--g 217 (337)
...+++.+.+|..... .....++++++.- ....+-. ...+..+..+...+ -+|.|.+= +. +
T Consensus 77 ~~~g~d~i~~H~E~~~------------~~~~~i~~ik~~g-~k~GlAl-nP~T~~~~l~~~l~-~iD~VLvMtV~PGf~ 141 (201)
T pfam00834 77 AEAGADIISFHAEASD------------HPHRTIQLIKEAG-AKAGLVL-NPATPLDAIEYLLD-DLDLVLLMSVNPGFG 141 (201)
T ss_pred HHCCCCEEEECHHHHH------------CHHHHHHHHHHCC-CEEEEEE-CCCCCCHHHHHHHH-HCCEEEEEEECCCCC
T ss_conf 8739988997544413------------7999999998649-7268885-69986028887674-279899988668988
Q ss_pred CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 865100123102344323244310634688999998-52289879972988888999999983888523347999
Q gi|254781020|r 218 GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 218 G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
|..... ..+..+..+.... +-..++.|..||||... -+-+...+|||.+-.||++.
T Consensus 142 GQ~f~~-----------------~~l~KI~~lr~~~~~~~~~~~I~vDGGIn~~-ti~~l~~~Gad~~V~GSaiF 198 (201)
T pfam00834 142 GQSFIP-----------------SVLPKIRKVRKMIDEGGLDTLIEVDGGVNLD-NIPQIAEAGADVLVAGSAVF 198 (201)
T ss_pred CCCCCH-----------------HHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHHHHHHCCCCEEEECCEEC
T ss_conf 764567-----------------7999999999999826998079998988899-99999987999999780024
No 342
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit; InterPro: IPR004486 This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.; GO: 0006730 one-carbon compound metabolic process.
Probab=75.75 E-value=5.1 Score=18.50 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHCCCEEEECC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHH
Q ss_conf 9989999877650898576253-203566520688524307999999998739971785047866-8899999997
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHL-NPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGL-SSMDIELGLK 205 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~-~~~~~~~a~~ 205 (337)
-+-+.+++++++.|||.+=+|+ ++.. ...|...+-..+.++.+-.+.+.|+++-++||.. ||...++|+|
T Consensus 144 dP~eWArKcVK~fGAdmvTiHlIsTdP----k~~Dksp~EAaK~~EdvLQAVdvP~viGGSGnpeKDPlVLEkaAE 215 (401)
T TIGR00381 144 DPAEWARKCVKEFGADMVTIHLISTDP----KVKDKSPKEAAKVLEDVLQAVDVPLVIGGSGNPEKDPLVLEKAAE 215 (401)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCC----CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH
T ss_conf 833588888876276638864433788----546887224788999876340677577478888667578998843
No 343
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=75.68 E-value=5.1 Score=18.49 Aligned_cols=124 Identities=16% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 99999999873997178504786688999999976997999458888651001231023443232443106346889999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM 251 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~ 251 (337)
.+.++.|.+. +.++-+ ..+.++.-+..++++||+.|..-- | |-.+. ..-|+..+..+.+
T Consensus 93 l~ai~~L~~~-Gi~vn~---Tavys~~Qa~~Aa~aGA~yvsPyv--g---------R~~d~------g~Dg~~~i~~i~~ 151 (220)
T PRK12653 93 LAAIKMLKAE-GIPTLG---TAVYGAAQGLLSALAGAEYVAPYV--N---------RIDAQ------GGSGIQTVTDLHQ 151 (220)
T ss_pred HHHHHHHHHC-CCCEEE---EECCCHHHHHHHHHCCCCEEEEEE--E---------EHHHC------CCCHHHHHHHHHH
T ss_conf 9999999882-987785---210679999999985998884442--5---------06433------8982668999999
Q ss_pred HHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 985-2289879972988888999999983888523347999984146---689999999999999999998089857
Q gi|254781020|r 252 ARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDS---SDAVVAAIESLRKEFIVSMFLLGTKRV 324 (337)
Q Consensus 252 ~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G---~~gv~~~l~~l~~el~~~m~~~G~~~i 324 (337)
... .+.+..|++ .-||+..++.+++.+|||.|-+.-.++.....- .+++..+.+. |-+..|-+||
T Consensus 152 ~~~~~~~~tkILa-ASiR~~~~v~~a~~~Gad~iTip~~v~~~l~~hplT~~~~~~F~~D-------w~~~~g~~~~ 220 (220)
T PRK12653 152 LLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQD-------WQGAFGRTSI 220 (220)
T ss_pred HHHHCCCCCEEEE-EECCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHHHHHHHHHH-------HHHHCCCCCC
T ss_conf 9997699988999-8389999999999869999983999999997791279999999999-------9997088889
No 344
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=75.55 E-value=5.1 Score=18.47 Aligned_cols=99 Identities=10% Similarity=-0.043 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEEE-------ECCCCC-CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHH
Q ss_conf 4307999999998739971785-------047866-88999999976997999458888651001231023443232443
Q gi|254781020|r 168 FADLSSKIALLSSAMDVPLLLK-------EVGCGL-SSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQ 239 (337)
Q Consensus 168 ~~~~~~~i~~l~~~~~~pii~k-------~v~~~~-~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~ 239 (337)
.+...+.++..++..+.|.++- +++... ..+-++...++|||+|..-+..
T Consensus 132 ~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~---------------------- 189 (289)
T COG2513 132 IDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT---------------------- 189 (289)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCHHHHHHHHHHHHHCCCCEECCCCCC----------------------
T ss_conf 9999999999997155888599961487775247999999999997597687136679----------------------
Q ss_pred HCCCCHHHHHHH-HHHHCCCCE-EEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 106346889999-985228987-997298888899999998388852334799998
Q gi|254781020|r 240 DWGIPTPLSLEM-ARPYCNEAQ-FIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 240 ~~gi~~~~al~~-~~~~~~~v~-IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
..+.+.. +.++..-+| -+.-.|-.--.++-..=.+|=+.|..|-..+.+
T Consensus 190 -----~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~ra 240 (289)
T COG2513 190 -----DLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAFRA 240 (289)
T ss_pred -----CHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEEECCHHHHH
T ss_conf -----999999999846877026863248988768999996696499978489999
No 345
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=75.44 E-value=5.2 Score=18.45 Aligned_cols=125 Identities=15% Similarity=0.055 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
...+... ...+++.+.+|.... ....+.++++++.-..+-++ ....+..+..+...+. +|.|.+
T Consensus 70 ~~~i~~~-~~~g~d~I~~H~E~~------------~~~~~~i~~ik~~g~~~Gla--l~p~T~~~~l~~~l~~-~D~vli 133 (211)
T cd00429 70 ERYIEAF-AKAGADIITFHAEAT------------DHLHRTIQLIKELGMKAGVA--LNPGTPVEVLEPYLDE-VDLVLV 133 (211)
T ss_pred HHHHHHH-HHHCCCEEEECCCCC------------CCHHHHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHH-HCEEEE
T ss_conf 7769999-970998899864322------------08999999999739872357--5489998999999975-152279
Q ss_pred C--CC--CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 5--88--8865100123102344323244310634688999998-52289879972988888999999983888523347
Q gi|254781020|r 214 A--GR--GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 214 ~--~~--gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr 288 (337)
= +. +|.... ...+..+..+.+.. +.+.++.|..||||.. .-+-+...+|||.+-+||
T Consensus 134 MtV~PGf~GQ~f~-----------------~~~~~ki~~l~~~~~~~~~~~~I~vDGGI~~-~~i~~l~~~Gad~~V~GS 195 (211)
T cd00429 134 MSVNPGFGGQKFI-----------------PEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred EEECCCCCCCCCC-----------------HHHHHHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHHHHCCCCEEEECH
T ss_conf 8746887887545-----------------6799999999999986499859999678598-999999985999999793
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254781020|r 289 PFLK 292 (337)
Q Consensus 289 ~~l~ 292 (337)
+++.
T Consensus 196 ~iF~ 199 (211)
T cd00429 196 ALFG 199 (211)
T ss_pred HHHC
T ss_conf 7758
No 346
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=75.15 E-value=5.2 Score=18.41 Aligned_cols=126 Identities=18% Similarity=0.182 Sum_probs=66.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 99999999873997178504786688999999976997999458888651001231023443232443106346889999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM 251 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~ 251 (337)
.+.++.|++ -+.++-+ ..+.++.-+..|+.+||+.+..-- | |-.+. ..-|+..+..+..
T Consensus 93 l~ai~~L~~-~gi~vn~---Tavys~~Qa~~Aa~aGA~YvsPyv--G---------R~~d~------G~Dg~~~i~~i~~ 151 (220)
T PRK12655 93 LAAIKKLKK-EGIPTLG---TAVYSAAQGLLAALAGAKYVAPYV--N---------RVDAQ------GGDGIRMVQELQT 151 (220)
T ss_pred HHHHHHHHH-CCCCEEE---EECCCHHHHHHHHHCCCCEEEEEH--H---------HHHHC------CCCHHHHHHHHHH
T ss_conf 999999998-6997899---851789999999985997896321--0---------57555------8984899999999
Q ss_pred HHH-HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 985-228987997298888899999998388852334799998414668999999999999999999808985
Q gi|254781020|r 252 ARP-YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 252 ~~~-~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
+-. .+.+.. |...-||+..++.+++.+|||.|-+.-.++.....-+ -....++.+.++-+ +..|-+|
T Consensus 152 ~~~~~~~~tk-ILaASiR~~~~v~~a~~~Gad~vTipp~v~~~l~~~p-lT~~~~~~F~~Dw~---~~~g~~~ 219 (220)
T PRK12655 152 LLEMHAPESM-VLAASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTP-AVESAIEKFEQDWQ---AAFGTTN 219 (220)
T ss_pred HHHHCCCCCE-EEEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHCCC-HHHHHHHHHHHHHH---HHCCCCC
T ss_conf 9997599968-9998389999999999869999981999999997690-28999999999999---9619788
No 347
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=74.49 E-value=5.5 Score=18.31 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCHHHHHHHHHC
Q ss_conf 236799899998776508985762532035665206885243079999999987399717850-4786688999999976
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKE-VGCGLSSMDIELGLKS 206 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~-v~~~~~~~~~~~a~~a 206 (337)
.....+.+++.+..+....+.+.+|.+.+ .+.++.++...+.|+|--. +....+ .........
T Consensus 58 Vf~n~~~~~i~~i~~~~~ld~VQlHG~e~---------------~~~~~~l~~~~~~~v~kai~v~~~~~-~~~~~~~~~ 121 (208)
T COG0135 58 VFVNESIEEILEIAEELGLDAVQLHGDED---------------PEYIDQLKEELGVPVIKAISVSEEGD-LELAAREEG 121 (208)
T ss_pred EECCCCHHHHHHHHHHCCCCEEEECCCCC---------------HHHHHHHHHHCCCCEEEEEEECCCCC-HHHHHHCCC
T ss_conf 98799989999999833998899889899---------------99999998534875699998677622-445544148
Q ss_pred CCCEEEECCCC----CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCC-
Q ss_conf 99799945888----8651001231023443232443106346889999985228987997298888899999998388-
Q gi|254781020|r 207 GIRYFDIAGRG----GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGA- 281 (337)
Q Consensus 207 Gad~i~v~~~g----G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGA- 281 (337)
-+|.+.++... |+++... .| .+ ....+.+.|++..||+ +...|.+|+.++.
T Consensus 122 ~~d~~LlDa~~~~~~GGtG~~f-------------DW--~~--------l~~~~~~~~~~LAGGL-~p~NV~~ai~~~~p 177 (208)
T COG0135 122 PVDAILLDAKVPGLPGGTGQTF-------------DW--NL--------LPKLRLSKPVMLAGGL-NPDNVAEAIALGPP 177 (208)
T ss_pred CCCEEEECCCCCCCCCCCCCEE-------------CH--HH--------CCCCCCCCCEEEECCC-CHHHHHHHHHHCCC
T ss_conf 7748998188877789788677-------------97--77--------0542456987997788-98999999983598
Q ss_pred CEEHHHHH
Q ss_conf 85233479
Q gi|254781020|r 282 SLGGLASP 289 (337)
Q Consensus 282 daV~iGr~ 289 (337)
..|=+-+.
T Consensus 178 ~gvDvSSG 185 (208)
T COG0135 178 YGVDVSSG 185 (208)
T ss_pred CEEEECCC
T ss_conf 37981553
No 348
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=73.62 E-value=5.7 Score=18.18 Aligned_cols=67 Identities=12% Similarity=0.078 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEE--EECCCCCCHHHHHHH
Q ss_conf 999999769979994588886510012310234432324431063468899999852289879--972988888999999
Q gi|254781020|r 199 DIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQF--IASGGLRNGVDILKS 276 (337)
Q Consensus 199 ~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~I--iadGGIr~g~Dv~kA 276 (337)
-++...++|||+|++-+.- ..+.+....+. .+.|+ ....+-. .-.+-..
T Consensus 165 R~~aY~~AGAD~ifi~~~~---------------------------~~~ei~~~~~~-~~~Pl~~~~~~~~~-~~~~~eL 215 (243)
T cd00377 165 RAKAYAEAGADGIFVEGLK---------------------------DPEEIRAFAEA-PDVPLNVNMTPGGN-LLTVAEL 215 (243)
T ss_pred HHHHHHHCCCCEEEECCCC---------------------------CHHHHHHHHHH-CCCCEEEEECCCCC-CCCHHHH
T ss_conf 9999998299899945899---------------------------99999999973-69998999578899-9999999
Q ss_pred HHHCCCEEHHHHHHHHHH
Q ss_conf 983888523347999984
Q gi|254781020|r 277 IILGASLGGLASPFLKPA 294 (337)
Q Consensus 277 lalGAdaV~iGr~~l~~~ 294 (337)
-.||.+.|.+|...+.++
T Consensus 216 ~~lGv~~v~~g~~~~~aa 233 (243)
T cd00377 216 AELGVRRVSYGLALLRAA 233 (243)
T ss_pred HHCCCCEEEECHHHHHHH
T ss_conf 986996999851999999
No 349
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=73.34 E-value=1.9 Score=21.02 Aligned_cols=171 Identities=12% Similarity=0.027 Sum_probs=83.8
Q ss_pred HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC------CCHH-------HHHHHH---
Q ss_conf 765089857625320356652068852430799999999873997178504786------6889-------999999---
Q gi|254781020|r 141 VHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCG------LSSM-------DIELGL--- 204 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~------~~~~-------~~~~a~--- 204 (337)
....|++++-+-+-...+......+ .-..+.+.+-.-+...+.|+++-.+.-. .+.+ .+..++
T Consensus 117 ik~~GadAvK~L~yyrpD~~~~in~-~k~~~verig~eC~~~dipf~lE~l~Y~~~~~d~~~~eyak~Kp~~V~~a~kef 195 (340)
T PRK12858 117 IKEAGADAVKLLLYYRPDDDKAIND-RKQAFVERVGAECRANDIPFFLELLTYDFKISDKKSEEFAKVKPELVIATMKEF 195 (340)
T ss_pred HHHCCCCEEEEEEEECCCCCHHHHH-HHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHCHHHHHHHHHHH
T ss_conf 9973968378999967999768899-999999999999987799807887401688887657989986738899999986
Q ss_pred ---HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC--CCCE-EEECCCCCCH---HHHHH
Q ss_conf ---7699799945888865100123102344323244310634688999998522--8987-9972988888---99999
Q gi|254781020|r 205 ---KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC--NEAQ-FIASGGLRNG---VDILK 275 (337)
Q Consensus 205 ---~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~--~~v~-IiadGGIr~g---~Dv~k 275 (337)
+-|+|.+-|--..-.. .+.+.. .......+-++...+++.. ..+| |+.+.|+..- .-+--
T Consensus 196 s~~~ygvDvlKvE~Pvn~~--------~veg~~---~~~~~yt~~ea~~~fk~~~~a~~~Pwv~LSAGV~~~~F~~~l~~ 264 (340)
T PRK12858 196 SKPRYGVDVLKVEVPVDMK--------FVEGRD---GFAAAYTQEEAFKLFREQSDATPLPFIFLSAGVTPELFLRELEF 264 (340)
T ss_pred CCCCCCCCEEEECCCCCCC--------CCCCCC---CCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHH
T ss_conf 3766698679962666612--------022456---75321359999999999973549997998189998999999999
Q ss_pred HHHHCC--CEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 998388--852334799998414668999999999999999999808985789614
Q gi|254781020|r 276 SIILGA--SLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 276 AlalGA--daV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
|...|| +.|.-||+.|.-+. ..+-..=.+.++.++.-.|..+|++|..
T Consensus 265 A~~aGa~fsG~L~GRA~W~dai------~~~~~~~~~a~~~wL~t~g~~~i~~Ln~ 314 (340)
T PRK12858 265 AKQAGADFNGVLCGRATWQDAI------EIFAPEGRAAGEAWLNTEGVANITRLNE 314 (340)
T ss_pred HHHCCCCCCCEEECHHHHHHHH------HCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9985997235534578777577------4146435999999999886999999999
No 350
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=73.27 E-value=5.8 Score=18.13 Aligned_cols=208 Identities=13% Similarity=0.038 Sum_probs=106.6
Q ss_pred HHHHHHHHHHC-CEEECCCCHHHHCCHHHH---HHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 99999999809-906605202211286688---89999986640123220275212367998999987765089857625
Q gi|254781020|r 77 RNLAIAAEKTK-VAMAVGSQRVMFSDHNAI---KSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLH 152 (337)
Q Consensus 77 ~~lA~aa~~~g-~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (337)
.+.|+.+.+.| +.++.++.+.. ...... +..+.........+..+++ ..+.+...+.. ..+.+....+
T Consensus 90 le~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG------~l~~eq~~~L~-~aGvd~ynhN 161 (335)
T COG0502 90 LEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLG------MLTEEQAEKLA-DAGVDRYNHN 161 (335)
T ss_pred HHHHHHHHHCCCCEEEEEEECCC-CCCCHHHHHHHHHHHHHHCCCHHHHCCC------CCCHHHHHHHH-HCCHHHEECC
T ss_conf 99999999749950799873167-7744899999999999846928640258------79999999999-7181133035
Q ss_pred CCCHHHHHHH-CCCCCHHHHHHHHHHHHHHCCCCE-EEEECCCCCCH----HHHHHHHHCC-CCEEEECCC---CCCCCC
Q ss_conf 3203566520-688524307999999998739971-78504786688----9999999769-979994588---886510
Q gi|254781020|r 153 LNPLQEIIQP-NGNTNFADLSSKIALLSSAMDVPL-LLKEVGCGLSS----MDIELGLKSG-IRYFDIAGR---GGTSWS 222 (337)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~pi-i~k~v~~~~~~----~~~~~a~~aG-ad~i~v~~~---gG~~~~ 222 (337)
++..++.... ...+.+++.++.++.+++. +..+ ..-.+|-+.+. +.+..+.+.. +|-|-|-.- .|+...
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~-Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle 240 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREA-GIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLE 240 (335)
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHC-CCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
T ss_conf 556978875657898888999999999980-9850451276189988899999999971899885423210379998666
Q ss_pred CHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH---HCCCCEEEECCCCCCHHHH--HHHHHHCCCEEHHHHHHHHHHCCC
Q ss_conf 01231023443232443106346889999985---2289879972988888999--999983888523347999984146
Q gi|254781020|r 223 RIESHRDLESDIGIVFQDWGIPTPLSLEMARP---YCNEAQFIASGGLRNGVDI--LKSIILGASLGGLASPFLKPAMDS 297 (337)
Q Consensus 223 ~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~---~~~~v~IiadGGIr~g~Dv--~kAlalGAdaV~iGr~~l~~~~~G 297 (337)
. ...+++.+.+.-++- ..++.-|...||.-+-.+- ..++.+||+.+++|--++...--.
T Consensus 241 ~----------------~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~ 304 (335)
T COG0502 241 N----------------AKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPD 304 (335)
T ss_pred C----------------CCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEECCEEEECCCCC
T ss_conf 5----------------899998999999999999778645672588352258889999984566356524476248998
Q ss_pred HHHHHHHHHHHH
Q ss_conf 689999999999
Q gi|254781020|r 298 SDAVVAAIESLR 309 (337)
Q Consensus 298 ~~gv~~~l~~l~ 309 (337)
.+...+.+..|.
T Consensus 305 ~e~D~~~l~~lg 316 (335)
T COG0502 305 EDKDLELLKDLG 316 (335)
T ss_pred CHHHHHHHHHCC
T ss_conf 036899999738
No 351
>KOG1260 consensus
Probab=73.16 E-value=5.9 Score=18.12 Aligned_cols=31 Identities=10% Similarity=0.243 Sum_probs=19.0
Q ss_pred CCEEEE---ECCCCCCH-HHHHHHHHCCCCEEEEC
Q ss_conf 971785---04786688-99999997699799945
Q gi|254781020|r 184 VPLLLK---EVGCGLSS-MDIELGLKSGIRYFDIA 214 (337)
Q Consensus 184 ~pii~k---~v~~~~~~-~~~~~a~~aGad~i~v~ 214 (337)
.|+|.- +-|+.++. ...+..+++|+.+|.+.
T Consensus 149 ~PIIaDad~G~G~atnv~k~~K~fIeaGaAGIhle 183 (492)
T KOG1260 149 IPIIADADAGFGGATNVFKTVKGFIEAGAAGIHLE 183 (492)
T ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 52353177787507789999999997163225640
No 352
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=72.82 E-value=6 Score=18.07 Aligned_cols=113 Identities=13% Similarity=0.078 Sum_probs=65.0
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCH
Q ss_conf 668899999-997699799945--88886510012310234432324431063468899999852289879972988888
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNG 270 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g 270 (337)
.++|+.++. ..+.|+|.+-++ |..|.- ...+ .+.+ ....|.++++ ..++|+..-||=--+
T Consensus 154 ~T~peea~~Fv~~TgvD~LAvaiGn~HG~y--------k~~g-------~p~l-~~~~L~~I~~-~~~vPLVLHGgSgvp 216 (307)
T PRK05835 154 LVNPKEAEQFVKESQVDYLAPAIGTSHGAF--------KFKG-------EPKL-DFERLQEVKR-LTNIPLVLHGASAIP 216 (307)
T ss_pred CCCHHHHHHHHHHHCHHHHHHHHCCCCCCC--------CCCC-------CCCC-CHHHHHHHHH-CCCCCEEECCCCCCC
T ss_conf 479999999998747079999866557777--------7789-------9767-8899999984-179987956898760
Q ss_pred ----------------------HHHHHHHHHCCCEEHHHHHHHHHHCC--------C------HHHHHHHHHHHHHHHHH
Q ss_conf ----------------------99999998388852334799998414--------6------68999999999999999
Q gi|254781020|r 271 ----------------------VDILKSIILGASLGGLASPFLKPAMD--------S------SDAVVAAIESLRKEFIV 314 (337)
Q Consensus 271 ----------------------~Dv~kAlalGAdaV~iGr~~l~~~~~--------G------~~gv~~~l~~l~~el~~ 314 (337)
.++.|++.+|-.=|-|+|-+-.+... . ..-+....+.+++-++.
T Consensus 217 d~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv~KiNI~Tdl~~a~~~~~r~~~~e~~~~~d~~~~~~~~~~a~~~~v~~ 296 (307)
T PRK05835 217 DNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKE 296 (307)
T ss_pred HHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78888875026656788899999999999869769986877899999999999984977689699989999999999999
Q ss_pred HHHHCCCCC
Q ss_conf 999808985
Q gi|254781020|r 315 SMFLLGTKR 323 (337)
Q Consensus 315 ~m~~~G~~~ 323 (337)
.|.++|+.+
T Consensus 297 ~i~~~GS~g 305 (307)
T PRK05835 297 RMKLLGSAN 305 (307)
T ss_pred HHHHHCCCC
T ss_conf 999848999
No 353
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=70.25 E-value=6.9 Score=17.72 Aligned_cols=65 Identities=18% Similarity=0.187 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC---------
Q ss_conf 99999997699799945888865100123102344323244310634688999998522898799729888---------
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR--------- 268 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr--------- 268 (337)
..++.+.++|.++++.+.+.- . .+ .+....+. ++..-|||
T Consensus 133 ~~~~~a~~~g~~G~V~~~~~~------~----------------------~i--~~~~~~~~-~iltPGI~~~~~~~dq~ 181 (216)
T cd04725 133 RLAKLAREAGVDGVVCGATEP------E----------------------AL--RRALGPDF-LILTPGIGAQGSGDDQK 181 (216)
T ss_pred HHHHHHHHHCCCEEEECCCHH------H----------------------HH--HHHCCCCC-EEECCCCCCCCCCCCCC
T ss_conf 999999861897799886248------9----------------------99--98508861-79735605777766882
Q ss_pred CHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8899999998388852334799998
Q gi|254781020|r 269 NGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 269 ~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
++.+.-+|+..|||.+-+||+.+.+
T Consensus 182 r~~tp~~a~~~gad~ivVGR~I~~a 206 (216)
T cd04725 182 RGGTPEDAIRAGADYIVVGRPITQA 206 (216)
T ss_pred CCCCHHHHHHCCCCEEEECCCCCCC
T ss_conf 6689999998799999989101489
No 354
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=69.78 E-value=7 Score=17.66 Aligned_cols=98 Identities=8% Similarity=-0.072 Sum_probs=57.5
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 99999999873997178504786688-99999997699799945888865100123102344323244310634688999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
.+.+.......+..++- .|.-.++ +.++.|.+..+|+|.+|...|..... .+.+..++
T Consensus 16 ~~iva~~l~~~GfeVi~--lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~-------------------~~~l~~~L 74 (128)
T cd02072 16 NKILDHAFTEAGFNVVN--LGVLSPQEEFIDAAIETDADAILVSSLYGHGEID-------------------CKGLREKC 74 (128)
T ss_pred HHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHH-------------------HHHHHHHH
T ss_conf 99999999978972984--7988999999999987399999982320256248-------------------99999999
Q ss_pred HHHHHCCCCEEEECCCCCCHH-----HHHHHHHHCCCEEHH-HHHHH
Q ss_conf 998522898799729888889-----999999838885233-47999
Q gi|254781020|r 251 MARPYCNEAQFIASGGLRNGV-----DILKSIILGASLGGL-ASPFL 291 (337)
Q Consensus 251 ~~~~~~~~v~IiadGGIr~g~-----Dv~kAlalGAdaV~i-Gr~~l 291 (337)
+.+. ..+++|+.-|++-.+. +.-+...+|.++|+= |++.-
T Consensus 75 ~e~G-~~di~vvvGG~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~ 120 (128)
T cd02072 75 DEAG-LKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPE 120 (128)
T ss_pred HHCC-CCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 9679-999989978986778310489999999669685749987999
No 355
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=69.49 E-value=7.1 Score=17.62 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=4.8
Q ss_pred EECCCEEEEC
Q ss_conf 6256868501
Q gi|254781020|r 54 KLSFPLLISS 63 (337)
Q Consensus 54 ~l~~Pv~iap 63 (337)
+++.-|+|+.
T Consensus 28 kyk~dfvI~N 37 (266)
T COG1692 28 KYKIDFVIVN 37 (266)
T ss_pred HHCCCEEEEC
T ss_conf 5067389985
No 356
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=69.22 E-value=7.2 Score=17.59 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=61.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 9999999987399717850478668899-999997699799945888865100123102344323244310634688999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMD-IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~-~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
...++.+-+..+...+ ....+... ...+.+...|.|+.+.+=. ++.-.+.+.
T Consensus 18 r~~l~~~L~~~g~~~v----~~a~~g~~al~~~~~~~~Dlil~D~~MP-----------------------~~dG~el~~ 70 (129)
T PRK10610 18 RRIVRNLLKELGFNNV----EEAEDGVDALNKLQAGGFGFVISDWNMP-----------------------NMDGLELLK 70 (129)
T ss_pred HHHHHHHHHHCCCCEE----EEECCHHHHHHHHHHCCCCEEEEECCCC-----------------------CCCHHHHHH
T ss_conf 9999999998699789----9989999999999858999999818999-----------------------998999999
Q ss_pred HHHH--HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9985--228987997298888899999998388852334799998414668999999999999999999808
Q gi|254781020|r 251 MARP--YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLG 320 (337)
Q Consensus 251 ~~~~--~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G 320 (337)
..++ ...++|||.-.+-.+..++.+|+.+||+.... .||- .+.|.+.++..+..+|
T Consensus 71 ~ir~~~~~~~~Pii~~T~~~~~~~~~~a~~~Ga~~yl~-KP~~-------------~~~L~~~i~~vl~r~g 128 (129)
T PRK10610 71 TIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVV-KPFT-------------AATLEEKLNKIFEKLG 128 (129)
T ss_pred HHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE-CCCC-------------HHHHHHHHHHHHHHCC
T ss_conf 99857777899689998868999999999869988998-9899-------------9999999999997639
No 357
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=68.71 E-value=5.5 Score=18.28 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999998089
Q gi|254781020|r 301 VVAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 301 v~~~l~~l~~el~~~m~~~G~ 321 (337)
|.+++.-..+.+..+-.++|.
T Consensus 416 v~~A~a~~~GN~arAaElLGi 436 (451)
T TIGR02915 416 VRKAIARVDGNIARAAELLGI 436 (451)
T ss_pred HHHHHHHHCCHHHHHHHHHCC
T ss_conf 999998726618889887258
No 358
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=67.87 E-value=7.7 Score=17.42 Aligned_cols=124 Identities=14% Similarity=0.038 Sum_probs=64.5
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC------CEEEEECCCC-CCHHHHHHHHHCCCCE
Q ss_conf 98776508985762532035665206885243079999999987399------7178504786-6889999999769979
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV------PLLLKEVGCG-LSSMDIELGLKSGIRY 210 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~------pii~k~v~~~-~~~~~~~~a~~aGad~ 210 (337)
.......+++.+.+|..... .....++++++.-.. ++.+-.+-|. +..+......+ -+|.
T Consensus 84 i~~~~~aGad~it~H~Ea~~------------~~~~~i~~i~~~~~~~~~~~~~~~~GlAlnP~Tpve~l~~~L~-~vD~ 150 (235)
T PRK08091 84 AKACVKAGAHCITLQAEGDI------------HLHHTLSWLGQQTVPVIGGEMPVLRGISLCPATPLDVLIPYLS-DVDV 150 (235)
T ss_pred HHHHHHCCCCEEEECCCCCC------------CHHHHHHHHHHHCCHHHHHHCCCCCEEEECCCCCHHHHHHHHH-HCCE
T ss_conf 99999759989997545555------------8899999999834202222207501389799998899999870-5399
Q ss_pred EEEC----CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 9945----888865100123102344323244310634688999998-52289879972988888999999983888523
Q gi|254781020|r 211 FDIA----GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR-PYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 211 i~v~----~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
|.+= |.||..... .-+..+..+.+.. +...+..|..||||... -+-+...+|||.+-
T Consensus 151 VLvMtV~PGfgGQ~fi~-----------------~~l~KI~~l~~~~~~~~~~~~I~VDGGI~~~-ti~~~~~aGad~~V 212 (235)
T PRK08091 151 IQLLTLDPRYGSKMRSS-----------------DLHERVAQLLCLLGDKREGKLIVIDGSMTQD-QLPSLIAQGIDWVV 212 (235)
T ss_pred EEEEEECCCCCCCCCCH-----------------HHHHHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHCCCCEEE
T ss_conf 99987668988886787-----------------8999999999999964999159984898988-89999983999999
Q ss_pred HHHHHHH
Q ss_conf 3479999
Q gi|254781020|r 286 LASPFLK 292 (337)
Q Consensus 286 iGr~~l~ 292 (337)
.||++..
T Consensus 213 ~GS~iF~ 219 (235)
T PRK08091 213 SGSALFS 219 (235)
T ss_pred ECHHHCC
T ss_conf 7824337
No 359
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family; InterPro: IPR011896 A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This entry describes the beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes..
Probab=67.39 E-value=7.1 Score=17.62 Aligned_cols=10 Identities=20% Similarity=0.165 Sum_probs=4.0
Q ss_pred HHHHHHEEEC
Q ss_conf 5688630324
Q gi|254781020|r 24 KFFDDWHLIH 33 (337)
Q Consensus 24 ~~fd~~~l~p 33 (337)
.+|.++.|=|
T Consensus 18 ~AL~EL~LdP 27 (302)
T TIGR02177 18 KALAELNLDP 27 (302)
T ss_pred HHHHHHCCCC
T ss_conf 9998628898
No 360
>TIGR00259 TIGR00259 conserved hypothetical protein TIGR00259; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A , which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA , Ycf3 , , and Ycf4 (IPR003359 from INTERPRO) . Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation . It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane , . Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain . Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids . The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners . Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates proteinprotein interactions. .
Probab=66.78 E-value=8.1 Score=17.29 Aligned_cols=66 Identities=14% Similarity=0.178 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH----CCCHHHHHHHHHHHHHHH
Q ss_conf 68899999852289879972988888999999983888523347999984----146689999999999999
Q gi|254781020|r 245 TPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA----MDSSDAVVAAIESLRKEF 312 (337)
Q Consensus 245 ~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~----~~G~~gv~~~l~~l~~el 312 (337)
-++.|..+++.-+++||++-+|+-. |=++-|.-=||.|-+||.+=+-. .--+++|.++++.+.+.+
T Consensus 191 ~~e~Lk~ak~~~~~~pVl~gsG~~~--~N~~~ll~~AdG~ivat~~Kk~G~~nn~vD~~Rv~~~~~~~a~~l 260 (261)
T TIGR00259 191 DLEELKLAKETVKDTPVLAGSGVNL--ENVEELLSIADGVIVATTIKKDGKINNLVDQERVSKFVEKVAEGL 260 (261)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCH--HHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8888999987517966998478798--899999987398798356533884200421899999999998524
No 361
>PRK10128 putative aldolase; Provisional
Probab=66.53 E-value=8.2 Score=17.26 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 88889999999838885233479
Q gi|254781020|r 267 LRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 267 Ir~g~Dv~kAlalGAdaV~iGr~ 289 (337)
..+..++-+.+.+|+++|.+|+=
T Consensus 200 ~~~~~~a~~~~~~G~~~v~~g~D 222 (250)
T PRK10128 200 AVAPDMAQQCLAWGANFVAVGVD 222 (250)
T ss_pred CCCHHHHHHHHHCCCCEEEEHHH
T ss_conf 79999999999769999986579
No 362
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=66.49 E-value=8.2 Score=17.26 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHHC
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866-88999999976
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGL-SSMDIELGLKS 206 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~-~~~~~~~a~~a 206 (337)
.+..++.++..++|.+.+++.-. .....+...+...+.++.+.+..+.|+++-+.+|.. +++..+.+.++
T Consensus 78 ~~wAKk~v~~~gaD~I~l~l~s~---dP~~~d~s~~e~a~~vk~V~~av~vPLIi~G~~n~ekD~evl~~~ae~ 148 (322)
T PRK04452 78 AAWAKKCVEKYGADMITLHLIST---DPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKAAEA 148 (322)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC---CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 99999999871887899994158---877676899999999999997569998997678854389999999997
No 363
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=64.74 E-value=8.9 Score=17.05 Aligned_cols=114 Identities=12% Similarity=0.156 Sum_probs=67.0
Q ss_pred CCCCCHHHHHHHHHCCCCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEE--ECCCC
Q ss_conf 78668899999997699799945--888865100123102344323244310634688999998522898799--72988
Q gi|254781020|r 192 GCGLSSMDIELGLKSGIRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFI--ASGGL 267 (337)
Q Consensus 192 ~~~~~~~~~~~a~~aGad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~Ii--adGGI 267 (337)
...++++.++...+.|+|.+-++ |..|.- ...+..-..+.|.++++.-.++|+. +.+|+
T Consensus 151 ~~~~~~e~a~~f~eTgvD~LAvaiGt~HG~Y-----------------~~~~~~L~~d~l~~I~~~v~~vPLVLHGgSG~ 213 (293)
T PRK07315 151 GELAPIEDAKAMVETGIDFLAAGIGNIHGPY-----------------PENWEGLDLDHLEKLTEAVPGFPIVLHGGSGI 213 (293)
T ss_pred CCCCCHHHHHHHHHCCCCEEEHHHCCCCCCC-----------------CCCCCCCCHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 6668888999998706643401204524553-----------------89998768999999985179985797589999
Q ss_pred CCHHHHHHHHHHCCCEEHHHHHHHHHHCCC-----------------------HHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 888999999983888523347999984146-----------------------68999999999999999999808985
Q gi|254781020|r 268 RNGVDILKSIILGASLGGLASPFLKPAMDS-----------------------SDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 268 r~g~Dv~kAlalGAdaV~iGr~~l~~~~~G-----------------------~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
.-.|+.||+.+|-.=|-++|-+-++...+ ..-+....+.+++-++..|.+.|+.+
T Consensus 214 -~~e~i~~ai~~Gi~KvNi~Tdl~~a~~~~~r~~l~~~~~~~~~~~~k~~~Dpr~~~~~~~~a~~~~v~~ki~lfGS~g 291 (293)
T PRK07315 214 -PDDQIQEAIKLGVAKVNVNTECQIAFANATRKFAREYEANEAEYDKKKLFDPRKFLAPGFKAIQAAVEERIDVFGSAN 291 (293)
T ss_pred -CHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -999999999819558874619899999999999971566433346777668589999999999999999999968898
No 364
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=64.23 E-value=9.1 Score=17.00 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 88899999998388852334799
Q gi|254781020|r 268 RNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 268 r~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
.+..|+-+.+.+|.+++.+|+=.
T Consensus 218 ~~~~~a~~~~~~G~~~i~~g~D~ 240 (256)
T PRK10558 218 PVEADARRYLEWGATFVAVGSDL 240 (256)
T ss_pred CCHHHHHHHHHCCCCEEEEHHHH
T ss_conf 99999999997699899972799
No 365
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=63.23 E-value=9.5 Score=16.89 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=73.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH--HHHH
Q ss_conf 23679989999877650898576253203566520688524307999999998739971785047866889999--9997
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIE--LGLK 205 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~--~a~~ 205 (337)
.....+.+.+.+..+..+.+.+.+|.+.. .+.+..++...+.++|-.. .+...++.. ...+
T Consensus 56 Vfvn~~~~~i~~~~~~~~~d~vQlHG~e~---------------~~~~~~lk~~~~~~iikai--~v~~~~~~~~~~~~~ 118 (203)
T cd00405 56 VFVNEDLEEILEIAEELGLDVVQLHGDES---------------PEYCAQLRARLGLPVIKAI--RVKDEEDLEKAAAYA 118 (203)
T ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCC---------------HHHHHHHHHHCCCEEEEEE--CCCCHHHHHHHHHHC
T ss_conf 99168399999999876998899878999---------------7999998750596499996--149777799998743
Q ss_pred CCCCEEEECCCCC----CCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH-C
Q ss_conf 6997999458888----6510012310234432324431063468899999852289879972988888999999983-8
Q gi|254781020|r 206 SGIRYFDIAGRGG----TSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIIL-G 280 (337)
Q Consensus 206 aGad~i~v~~~gG----~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlal-G 280 (337)
-.+|.+.++...+ +++... +|.+ .+....+.|++..||| +...|.+|+.. +
T Consensus 119 ~~~d~~L~Ds~~~~~~GGtG~~f---------------dw~~--------l~~~~~~~p~~LAGGl-~~~NV~~ai~~~~ 174 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTF---------------DWSL--------LRGLASRKPVILAGGL-TPDNVAEAIRLVR 174 (203)
T ss_pred CCCCEEEEECCCCCCCCCCCCEE---------------CHHH--------HHHCCCCCCEEEECCC-CHHHHHHHHHHCC
T ss_conf 77758999688887688776533---------------8899--------8621247987997788-9889999998509
Q ss_pred CCEEHHHHH
Q ss_conf 885233479
Q gi|254781020|r 281 ASLGGLASP 289 (337)
Q Consensus 281 AdaV~iGr~ 289 (337)
+..|=+-+.
T Consensus 175 p~gvDvsSg 183 (203)
T cd00405 175 PYGVDVSSG 183 (203)
T ss_pred CCEEEECCC
T ss_conf 989997670
No 366
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=62.41 E-value=9.8 Score=16.80 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999999998739971785047866889999999769979994
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
.+.++++++......++- +....+.+.++.|++.||....+
T Consensus 65 lell~~lR~~~~~~~VI~-ITa~~d~~~v~~Al~~Ga~DYLi 105 (239)
T PRK10430 65 LDLLPVLHEAGCKSDVIV-ISSAADAATIKDSLHYGVVDYLI 105 (239)
T ss_pred HHHHHHHHHHCCCCEEEE-EEECCCHHHHHHHHHCCCHHHEE
T ss_conf 999999998589981999-97268899999999839503048
No 367
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=62.03 E-value=10 Score=16.76 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+.....+.......|-+.+.++.|... . .+-.+.+++++..++...++-. ....++.....+.++||+|++
T Consensus 37 ~~~~~~~~~~~~~pDvvllDl~mpg~~-------~-~dGl~~~~~i~~~~p~~~vivl-s~~~~~~~v~~al~~Ga~Gyl 107 (216)
T PRK10840 37 DSTALINNLPKLDAHVLITDLSMPGDK-------Y-GDGITLIKYIKRHFPSLSIIVL-TMNNNPAILSAVLDLDIEGIV 107 (216)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCC-------C-CCHHHHHHHHHHHCCCCEEEEE-ECCCCHHHHHHHHHCCCCEEE
T ss_conf 999999998623989899826779998-------8-7899999999985899808998-477878999999858974899
Q ss_pred ECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCH-HHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 458888651001231023443232443106346-8899999852289879972988-88899999998388852334799
Q gi|254781020|r 213 IAGRGGTSWSRIESHRDLESDIGIVFQDWGIPT-PLSLEMARPYCNEAQFIASGGL-RNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 213 v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~-~~al~~~~~~~~~v~IiadGGI-r~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
.-+......... .+....... . .|. +..+..-...... .+-.. .+-.+|++.+|-|-+.-.|+.-+
T Consensus 108 ~K~~~~~~L~~A--I~~v~~G~~--~----~~~~~~~~l~~~~~~~~----~~~~LT~RE~eVL~lla~G~snkeIA~~L 175 (216)
T PRK10840 108 LKQGAPTDLPKA--LAALQKGKK--F----TPESVSRLLEKISAGGY----GDKRLSPKESEVLRLFAEGFLVTEIAKKL 175 (216)
T ss_pred ECCCCHHHHHHH--HHHHHCCCC--C----CCHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 878999999999--999987994--3----96999999997205888----77899989999999998699999999896
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 99841466899999999999999999980898578961
Q gi|254781020|r 291 LKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 291 l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
-. -..+.+.-.+..|.++|++|--||-
T Consensus 176 ~i-----------S~~TV~~h~~~i~~KLgv~n~~eLv 202 (216)
T PRK10840 176 NR-----------SIKTISSQKKSAMMKLGVENDIALL 202 (216)
T ss_pred CC-----------CHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 98-----------9999999999999982999899999
No 368
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=61.60 E-value=7.5 Score=17.51 Aligned_cols=37 Identities=11% Similarity=0.092 Sum_probs=34.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8987997298888899999998388852334799998
Q gi|254781020|r 257 NEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 257 ~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.+++|+.-|+|..+.++-.+...++|.+.||++-|.+
T Consensus 201 ~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAslka 237 (251)
T COG0149 201 EKVRILYGGSVKPGNAAELAAQPDIDGALVGGASLKA 237 (251)
T ss_pred CCEEEEEECCCCHHHHHHHHCCCCCCEEEECCEEECC
T ss_conf 8757997177685579999658999868972133052
No 369
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=61.04 E-value=10 Score=16.65 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCHHHHHHHHHC
Q ss_conf 23679989999877650898576253203566520688524307999999998739971785-04786688999999976
Q gi|254781020|r 128 LNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLK-EVGCGLSSMDIELGLKS 206 (337)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k-~v~~~~~~~~~~~a~~a 206 (337)
...+.+.+.+.+..+..+.+.+.+|.+.. .+.++.++...+.++|-. -+.+..+.+... ....
T Consensus 60 Vfv~~~~~~i~~~~~~~~~d~vQlHG~e~---------------~~~~~~l~~~~~~~iikai~v~~~~~l~~~~-~~~~ 123 (212)
T PRK01222 60 VFVNASDEEIAEIVEAVGLDLLQLHGDET---------------PEFCRQLKRRYGLPVIKALRVRPAADLEAAA-AYYP 123 (212)
T ss_pred EEECCCHHHHHHHHHHCCCCEEEECCCCC---------------HHHHHHHHHHCCCEEEEEEECCCHHHHHHHH-HHHC
T ss_conf 99458179999999856998899857437---------------8999999975397089998418778899999-8746
Q ss_pred CCCEEEECCCC---CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCC
Q ss_conf 99799945888---8651001231023443232443106346889999985228987997298888899999998-3888
Q gi|254781020|r 207 GIRYFDIAGRG---GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSII-LGAS 282 (337)
Q Consensus 207 Gad~i~v~~~g---G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla-lGAd 282 (337)
.+|.+.++... |+++.+. . | .+ ......+.|++..|||- ...|.+||. ++..
T Consensus 124 ~~d~~L~Ds~~~~~GGtG~~f-------------d--w------~~--l~~~~~~~~~~LAGGl~-~~Nv~~ai~~~~p~ 179 (212)
T PRK01222 124 VADGLLLDAYVPLPGGTGKTF-------------D--W------SL--LAGFPAGLPWMLAGGLN-PDNVAEAIRQVRPY 179 (212)
T ss_pred CCCEEEECCCCCCCCCCCCCC-------------C--H------HH--HHHCCCCCCEEEECCCC-HHHHHHHHHHHCCC
T ss_conf 687898638987678777643-------------8--7------99--86143578789966788-78999999985999
Q ss_pred EEHHHHHH
Q ss_conf 52334799
Q gi|254781020|r 283 LGGLASPF 290 (337)
Q Consensus 283 aV~iGr~~ 290 (337)
.|=+-+.+
T Consensus 180 gvDvsSGV 187 (212)
T PRK01222 180 GVDVSSGV 187 (212)
T ss_pred EEEECCCE
T ss_conf 99963810
No 370
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=60.75 E-value=8.6 Score=17.14 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=31.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 987997298888899999998388852334799998
Q gi|254781020|r 258 EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 258 ~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
.-||+.-|||+.-.|.--+.-+|-++|.+||+....
T Consensus 181 ~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G 216 (229)
T COG1411 181 EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEG 216 (229)
T ss_pred CCCEEECCCCCCHHHHHHHHCCCCCEEEEHHHHHCC
T ss_conf 375344487585777899861798546543356527
No 371
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=58.93 E-value=11 Score=16.43 Aligned_cols=115 Identities=14% Similarity=0.175 Sum_probs=59.6
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCEEE-EECCCCCCH-HHHHHHHHCCCCEEEECCC
Q ss_conf 77650898576253203566520688524307999999998739-97178-504786688-9999999769979994588
Q gi|254781020|r 140 AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMD-VPLLL-KEVGCGLSS-MDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~pii~-k~v~~~~~~-~~~~~a~~aGad~i~v~~~ 216 (337)
.....+++++.+..-.. .+..+ .+..+.+.+..+ .++.. +-.-...++ +..+.+++.|.|-|.=||.
T Consensus 81 ~~~~~Ga~GvV~G~L~~------dg~iD----~~~~~~Li~~a~~l~vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~ 150 (248)
T PRK11572 81 TVRELGFPGLVTGVLDV------DGHVD----MPRMEKIMAAAGPLAVTFHRAFDMCANPLNALKNLAELGVARILTSGQ 150 (248)
T ss_pred HHHHCCCCEEEEEEECC------CCCCC----HHHHHHHHHHHCCCEEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 99986999679966889------99849----999999999748980798620221499999999999759998988999
Q ss_pred CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 88651001231023443232443106346889999985228987997298888899999998388852334
Q gi|254781020|r 217 GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 217 gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
.- ...-|++.+..|.+ ....++ |++-|||+ ...+-+.+..|.+.+...
T Consensus 151 ~~-------------------~A~~G~~~L~~L~~--~a~~~i-Im~GgGV~-~~Ni~~~~~tG~~eiH~S 198 (248)
T PRK11572 151 QS-------------------DAEQGLSLIMELIA--QGDAPI-IMAGAGVR-AENLQKFLDAGVREVHSS 198 (248)
T ss_pred CC-------------------CHHHHHHHHHHHHH--HCCCCE-EEECCCCC-HHHHHHHHHCCCCEEEEC
T ss_conf 78-------------------77788999999998--449968-98789989-999999997597789735
No 372
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=58.82 E-value=11 Score=16.42 Aligned_cols=244 Identities=13% Similarity=0.081 Sum_probs=114.5
Q ss_pred HHEEECCCCCCCCHHHCCCEEEECCEEEC--CCEEEE-CHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCC---
Q ss_conf 63032455789981017462998989625--686850-126633430002569999999980990660520221128---
Q gi|254781020|r 28 DWHLIHRALPEISFDEVDPSVEFLGKKLS--FPLLIS-SMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSD--- 101 (337)
Q Consensus 28 ~~~l~p~~l~~~~~~~vdlst~i~G~~l~--~Pv~ia-pmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~--- 101 (337)
+-.|+-|- ...-||-+++.|.++- .|+++| |.|- -...--...|+..++.|.-+.-|...-+.-.
T Consensus 92 k~llvsr~-----~~~~~t~v~v~~~~iG~~~~~iIAGPCsv----ES~eQi~~~A~~vk~~G~~~lRgGa~KPRTsPys 162 (360)
T PRK12595 92 KALLVSRK-----KKPEDTIVDVKGEIIGDGNQSFIFGPCAV----ESYEQVAAVAQALKAKGLKLLRGGAFKPRTSPYD 162 (360)
T ss_pred CEEEEECC-----CCCCCCEEEECCEEECCCCEEEEECCCCC----CCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
T ss_conf 33787457-----68888779879999779964389568836----7899999999999975975572555689999976
Q ss_pred -----HHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf -----668889999986640123220275212367998999987765089857625320356652068852430799999
Q gi|254781020|r 102 -----HNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIA 176 (337)
Q Consensus 102 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 176 (337)
+++..|..-.... .+.....+-.+...+....+ . .|.+.+.....| +| ..++
T Consensus 163 FqGlG~eGL~~L~~a~~e--------~gl~vvTEV~~~~~ve~~~~-y-vDilqIGARnmq---------Nf----~LLk 219 (360)
T PRK12595 163 FQGLGVEGLKILKQVADE--------YDLAVISEIVNPNDVEVALD-Y-VDVIQIGARNMQ---------NF----ELLK 219 (360)
T ss_pred CCCCCHHHHHHHHHHHHH--------HCCCEEEEECCHHHHHHHHH-H-CCEEEECCHHCC---------CH----HHHH
T ss_conf 576845799999999998--------59972798578889999997-4-868988841035---------99----9999
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHH----HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 9998739971785047866889999999----769979994588886510012310234432324431063468899999
Q gi|254781020|r 177 LLSSAMDVPLLLKEVGCGLSSMDIELGL----KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 177 ~l~~~~~~pii~k~v~~~~~~~~~~~a~----~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
.+.+ ++.|+++|--. ..+.+.+..++ ..|-.-|++--+|-.+.-... |.+ ..+.+++..
T Consensus 220 ~vg~-~~kPVLlKrg~-~ati~ewl~AaEyi~~~Gn~~vilceRGirT~e~~t--Rnt-------------ldl~avp~~ 282 (360)
T PRK12595 220 AAGR-VNKPVLLKRGL-SATIEEFIYAAEYIMSQGNDQIILCERGIRTYEKAT--RNT-------------LDISAVPIL 282 (360)
T ss_pred HHHC-CCCCEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCC-------------CCHHHHHHH
T ss_conf 9861-39937960799-999999999999998679987899917756778766--889-------------886788998
Q ss_pred HHHCCCCEEEECCCCCCHH-H-----HHHHHHHCCCEEHHHHH--HHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCCC
Q ss_conf 8522898799729888889-9-----99999838885233479--999841466899-99999999999999998089
Q gi|254781020|r 253 RPYCNEAQFIASGGLRNGV-D-----ILKSIILGASLGGLASP--FLKPAMDSSDAV-VAAIESLRKEFIVSMFLLGT 321 (337)
Q Consensus 253 ~~~~~~v~IiadGGIr~g~-D-----v~kAlalGAdaV~iGr~--~l~~~~~G~~gv-~~~l~~l~~el~~~m~~~G~ 321 (337)
+. ....|||.|=-=.+|. | .-+|+++|||.+||=.- .-.+.-+|+.-+ -.-++.|.++|+.....++.
T Consensus 283 k~-~thLPVivDPSH~~G~r~lv~~~a~aa~a~GaDGlmIEvHp~P~~AlSD~~Qql~~~~f~~l~~~l~~~~~~~~~ 359 (360)
T PRK12595 283 KQ-ETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFYDELKPLADKLNA 359 (360)
T ss_pred HC-CCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 64-999998989965215575899999999974999799986688232158710048999999999999999998547
No 373
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=57.17 E-value=12 Score=16.25 Aligned_cols=75 Identities=8% Similarity=0.062 Sum_probs=43.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC-CCCEEEECCCCCCHHHHHH
Q ss_conf 899999997699799945888865100123102344323244310634688999998522-8987997298888899999
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC-NEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~-~~v~IiadGGIr~g~Dv~k 275 (337)
.+.++.|.+.+++.|.+|..-++ +.. =+|.+. ...++.+ .+| .+..|||--..|.-.
T Consensus 623 eE~a~~A~e~dvhvigisslaa~---------h~t----------LVP~l~--~~Lk~~g~~di-~VvvGGvIP~~D~~~ 680 (715)
T PRK09426 623 EEAARQAVENDVHVVGVSSLAAG---------HKT----------LVPALI--EALKKLGREDI-MVVVGGVIPPQDYDF 680 (715)
T ss_pred HHHHHHHHHCCCCEEEEECCCCC---------CHH----------HHHHHH--HHHHHCCCCCC-EEEECCCCCHHHHHH
T ss_conf 99999999759999998233454---------421----------279999--99996499886-799838688799999
Q ss_pred HHHHCCCEEH-HHHHHHHH
Q ss_conf 9983888523-34799998
Q gi|254781020|r 276 SIILGASLGG-LASPFLKP 293 (337)
Q Consensus 276 AlalGAdaV~-iGr~~l~~ 293 (337)
...+|.++|+ -|+.+.-+
T Consensus 681 L~~~GV~~if~Pgt~i~~~ 699 (715)
T PRK09426 681 LYEAGVAAIFGPGTVIADA 699 (715)
T ss_pred HHHCCCCEEECCCCCHHHH
T ss_conf 9976977785899827999
No 374
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=56.69 E-value=12 Score=16.21 Aligned_cols=165 Identities=13% Similarity=0.065 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 989999877650898576253203566520688524307999999998739-9717850478668899999997699799
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
+.+.+.+.......|.+.+.+..|.. +-.+.++++|+... .|+++ .....+.++...+.++|||-.
T Consensus 37 ~~~~a~~~~~~~~~DlvilDi~lp~~-----------dG~~l~~~iR~~~~~~pII~--LTa~~~~~d~i~~l~~GADDY 103 (239)
T PRK09468 37 NAEQMDRLLTRESFHLMVLDLMLPGE-----------DGLSICRRLRSQNNPTPIIM--LTAKGEEVDRIVGLEMGADDY 103 (239)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCC-----------CCCHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHCCCCEE
T ss_conf 99999999975899899987899888-----------87346777875057877899--946678789999997698688
Q ss_pred EECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH------CCCCEEEECCCC------------------
Q ss_conf 94588886510012310234432324431063468899999852------289879972988------------------
Q gi|254781020|r 212 DIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY------CNEAQFIASGGL------------------ 267 (337)
Q Consensus 212 ~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~------~~~v~IiadGGI------------------ 267 (337)
+.-=..-. . . +..+.+++.-... ...-.++..|++
T Consensus 104 i~KPf~~~---------E---------L---~aRI~allrR~~~~~~~~~~~~~~~~~~g~l~ld~~~~~v~~~~~~i~L 162 (239)
T PRK09468 104 LPKPFNPR---------E---------L---LARIRAVLRRQAPELPGAPSQEEEVIAFGEFSLNLGTRELFRGDEPIPL 162 (239)
T ss_pred EECCCCHH---------H---------H---HHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEECCCCEEEECCEEEEC
T ss_conf 55899989---------9---------9---9999999863234456776677876999999999777999989998876
Q ss_pred -CCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHCCCCC--HHHHHCCCC
Q ss_conf -88899999998388852334799998414668--999999999999999999808985--789614960
Q gi|254781020|r 268 -RNGVDILKSIILGASLGGLASPFLKPAMDSSD--AVVAAIESLRKEFIVSMFLLGTKR--VQELYLNTA 332 (337)
Q Consensus 268 -r~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~--gv~~~l~~l~~el~~~m~~~G~~~--i~el~~~~~ 332 (337)
.+-.++++.|+.-..-|. -|.-|...+.|.+ .-.+.++....-||.-+...+... |+-.++.-+
T Consensus 163 T~~E~~LL~~L~~~~g~vv-sre~Ll~~vwg~~~~~~~rtidv~I~rLRkKl~~~~~~~~~I~TvrG~GY 231 (239)
T PRK09468 163 TTGEFAVLKALVRHPREPL-SRDKLMNLARGREYSAMERSIDVQISRLRRLIEPDPAHPRYIQTVWGLGY 231 (239)
T ss_pred CHHHHHHHHHHHHCCCCCC-CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCE
T ss_conf 7899999999997799667-69999999629887888483999999999975207899984998758086
No 375
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=56.63 E-value=12 Score=16.20 Aligned_cols=127 Identities=15% Similarity=0.144 Sum_probs=73.6
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHCCCCE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899-99999769979
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMD-IELGLKSGIRY 210 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~-~~~a~~aGad~ 210 (337)
.+.+...+...+.|++.+-+|..-.+.. ...++.+|+.=..+-+ +-|..|+-+ .+...+ -+|.
T Consensus 68 ~~pd~~~~~Fa~aGA~~I~vH~Ea~~h~------------~R~l~~Ik~~G~~AG~---v~NP~TPl~~~~~~L~-~~D~ 131 (216)
T TIGR01163 68 ENPDRYIEDFAEAGADIITVHAEATEHI------------HRLLQLIKELGAKAGI---VLNPATPLEALEYVLE-DVDL 131 (216)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCCH------------HHHHHHHHHCCCCEEE---EECCCCCHHHHHHHHH-HCCE
T ss_conf 7857778899970899899843776267------------9999999971897068---8679999878998987-6298
Q ss_pred EEE-C---CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-HH--HHCCCCEEEECCCCCCHHHHHHHHHHCCCE
Q ss_conf 994-5---8888651001231023443232443106346889999-98--522898799729888889999999838885
Q gi|254781020|r 211 FDI-A---GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM-AR--PYCNEAQFIASGGLRNGVDILKSIILGASL 283 (337)
Q Consensus 211 i~v-~---~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~-~~--~~~~~v~IiadGGIr~g~Dv~kAlalGAda 283 (337)
+.+ | |.||+.+.+-. +..+..+.+ +. +...++.|-.||||.. .=+.+.-.+|||.
T Consensus 132 VLlMSVnPGFgGQkFIP~~-----------------~~Kir~~R~~id~~~~~~~~~ieVDGGv~~-~ni~~~~~AGAD~ 193 (216)
T TIGR01163 132 VLLMSVNPGFGGQKFIPET-----------------LEKIRELRKMIDKLELGLSILIEVDGGVNE-DNIAEVAEAGADI 193 (216)
T ss_pred EEEEEEECCCCCCCCHHHH-----------------HHHHHHHHHHHHHHCCCCCEEEEECCCCCH-HHHHHHHHCCCCE
T ss_conf 9988760799884110578-----------------999999999998602799558997179897-6799999758989
Q ss_pred EHHHHHHHH
Q ss_conf 233479999
Q gi|254781020|r 284 GGLASPFLK 292 (337)
Q Consensus 284 V~iGr~~l~ 292 (337)
+=.|+++..
T Consensus 194 ~VaGSaiF~ 202 (216)
T TIGR01163 194 LVAGSAIFG 202 (216)
T ss_pred EEEEEEEEC
T ss_conf 998310208
No 376
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=56.50 E-value=12 Score=16.19 Aligned_cols=69 Identities=19% Similarity=0.164 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 98999987765089857625320356652068852430799999999873-99717850478668899999997699799
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
+..++.........|.+.+.+..|.. .-.+.++++++.. ..|+++ +......++...+.++|||..
T Consensus 32 ~~~ea~~~~~~~~~DlvilDi~lp~~-----------~G~~l~~~ir~~~~~~pII~--lt~~~~~~~~~~~l~~GAddy 98 (222)
T PRK10643 32 TAREAEQSLESGHYSLVVLDLGLPDE-----------DGLHFLARIRQKKYTLPVLI--LTARDTLEDRIAGLDVGADDY 98 (222)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCC-----------CCHHHHHHHHHCCCCCCEEE--EECCCCHHHHHHHHHCCCCEE
T ss_conf 99999999974899899996888998-----------62268999983489988999--821036788999997599776
Q ss_pred EEC
Q ss_conf 945
Q gi|254781020|r 212 DIA 214 (337)
Q Consensus 212 ~v~ 214 (337)
+.-
T Consensus 99 i~K 101 (222)
T PRK10643 99 LVK 101 (222)
T ss_pred EEC
T ss_conf 438
No 377
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=55.57 E-value=13 Score=16.10 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=55.9
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH----HHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
Q ss_conf 99999999873997178504786688999999----97699799945888865100123102344323244310634688
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELG----LKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL 247 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a----~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~ 247 (337)
.+.++.+. .++.|+.+|. |...+++++..+ ...|.+-+++--+|-.+.-.. .. -+.-..
T Consensus 124 tdLl~a~a-~t~kpV~iKk-g~~~s~~~~~~a~eki~~~Gn~~v~l~ERG~~t~~gy---~~------------~v~D~~ 186 (266)
T PRK13398 124 FELLKEVG-KTKKPILLKR-GMSATIEEWLYAAEYIMSEGNENVVLCERGIRTFETY---TR------------NTLDLA 186 (266)
T ss_pred HHHHHHHH-HHCCCEEECC-CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC---CC------------CCHHHH
T ss_conf 89999999-7099667348-7668889999999999847998389984252457774---43------------521367
Q ss_pred HHHHHHHHCCCCEEEEC----CCCCCHHHHH--HHHHHCCCEEHHHH
Q ss_conf 99999852289879972----9888889999--99983888523347
Q gi|254781020|r 248 SLEMARPYCNEAQFIAS----GGLRNGVDIL--KSIILGASLGGLAS 288 (337)
Q Consensus 248 al~~~~~~~~~v~Iiad----GGIr~g~Dv~--kAlalGAdaV~iGr 288 (337)
+++..++. ..+|||.| .|-|..--.+ .|+++|||.+++=+
T Consensus 187 ~i~~mk~~-~~lPVi~D~SHs~G~r~~v~~la~aAva~G~dGlfiE~ 232 (266)
T PRK13398 187 AVAVIKEL-SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEV 232 (266)
T ss_pred HHHHHHHC-CCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 79999857-79998988853356799999999999983998899982
No 378
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=55.31 E-value=13 Score=16.07 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=48.3
Q ss_pred HHHHHH-HHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 899999-9976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 197 SMDIEL-GLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 197 ~~~~~~-a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
.+.++. ....++|+++++|+.-++. +-++-|..+++..+ +|+++-+|+- ..-+.+
T Consensus 166 ~~~v~dtver~~aDaVI~tG~~TG~~----------------------~d~~el~~a~~~~~-~pvlvGSGv~-~eN~~~ 221 (263)
T COG0434 166 EEAVKDTVERGLADAVIVTGSRTGSP----------------------PDLEELKLAKEAVD-TPVLVGSGVN-PENIEE 221 (263)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCC----------------------CCHHHHHHHHHCCC-CCEEEECCCC-HHHHHH
T ss_conf 99999999704887799956667899----------------------99899999986269-8789736888-889999
Q ss_pred HHHHCCCEEHHHHHHHHHH----CCCHHHHHHHHHHHH
Q ss_conf 9983888523347999984----146689999999999
Q gi|254781020|r 276 SIILGASLGGLASPFLKPA----MDSSDAVVAAIESLR 309 (337)
Q Consensus 276 AlalGAdaV~iGr~~l~~~----~~G~~gv~~~l~~l~ 309 (337)
.|-. ||.|-+||.+=... .--.+.|.++++..+
T Consensus 222 ~l~~-adG~IvgT~lK~~G~~~n~VD~~Rv~~~v~~a~ 258 (263)
T COG0434 222 LLKI-ADGVIVGTSLKKGGVTWNPVDLERVRRFVEAAR 258 (263)
T ss_pred HHHH-CCCEEEEEEECCCCEECCCCCHHHHHHHHHHHH
T ss_conf 9987-286699786603886368459999999999998
No 379
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=54.71 E-value=13 Score=16.01 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 899998776508985762532035665206885243079999999987399-7178504786688999999976997999
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
...+.+......+|.+.+.+..|.. + -.+..+++|+.... |+++ .....+.++...+.++|||-.+
T Consensus 33 g~~a~~~~~~~~~DlvilDi~lP~~------d-----G~~l~~~iR~~~~~~PII~--lta~~~~~d~i~~l~~GAdDYl 99 (219)
T PRK10336 33 GRQGKEALYSAPYDAVILDLTLPGM------D-----GRDILREWREKGQREPVLI--LTARDALAERVEGLRLGADDYL 99 (219)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCC------C-----CCCCCCCHHHHCCCCCEEE--EECCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999862896999997999999------8-----5631010465278887899--8068999999999976998886
Q ss_pred EC
Q ss_conf 45
Q gi|254781020|r 213 IA 214 (337)
Q Consensus 213 v~ 214 (337)
.-
T Consensus 100 ~K 101 (219)
T PRK10336 100 CK 101 (219)
T ss_pred EC
T ss_conf 88
No 380
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=53.95 E-value=14 Score=15.94 Aligned_cols=95 Identities=12% Similarity=0.094 Sum_probs=56.0
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCH-HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 9999999873997178504786688-999999976997999458888651001231023443232443106346889999
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSS-MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM 251 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~-~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~ 251 (337)
+.+...-+..+..++- .|--.++ +.++.+.+.++|.|-+|..-|+.... ++.+..+++
T Consensus 17 ~iva~~l~d~GfeVi~--lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~-------------------~~~l~~~L~ 75 (122)
T cd02071 17 KVIARALRDAGFEVIY--TGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTL-------------------FPEVIELLR 75 (122)
T ss_pred HHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH-------------------HHHHHHHHH
T ss_conf 9999999978976996--7998899999999997399899996465544789-------------------999999999
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH-HHHH
Q ss_conf 98522898799729888889999999838885233-4799
Q gi|254781020|r 252 ARPYCNEAQFIASGGLRNGVDILKSIILGASLGGL-ASPF 290 (337)
Q Consensus 252 ~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i-Gr~~ 290 (337)
.+. .++++| ..||+--..|..+...+|.++|+- |++.
T Consensus 76 e~G-~~di~v-~vGG~Ip~~d~~~l~~~Gv~~vf~pgt~~ 113 (122)
T cd02071 76 ELG-AGDILV-VGGGIIPPEDYELLKEMGVAEIFGPGTSI 113 (122)
T ss_pred HCC-CCCCEE-EEECCCCHHHHHHHHHCCCCEEECCCCCH
T ss_conf 769-998469-99456498999999977998898958899
No 381
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=53.64 E-value=14 Score=15.91 Aligned_cols=114 Identities=16% Similarity=0.127 Sum_probs=58.8
Q ss_pred HHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEE-EECCCCCCH-HHHHHHHHCCCCEEEECCC
Q ss_conf 7765089857625320356652068852430799999999873-997178-504786688-9999999769979994588
Q gi|254781020|r 140 AVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLL-KEVGCGLSS-MDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~-k~v~~~~~~-~~~~~a~~aGad~i~v~~~ 216 (337)
.....+++++.+..-.. .+.-+ .+..+.+.+.. +.|+.. +-+=...++ +..+.+.+.|.+.|.-||.
T Consensus 80 ~~~~~G~~GvV~G~L~~------d~~iD----~~~~~~li~~a~~l~~TFHRAfD~~~d~~~al~~L~~lG~~rILTSGg 149 (202)
T pfam03932 80 KAVELGAPGVVLGALTA------DGEID----TKRMEKLIEAAGGLGVTFHRAFDMCPDPEEALEQLIELGCERVLTSGG 149 (202)
T ss_pred HHHHCCCCEEEEEEECC------CCCCC----HHHHHHHHHHHCCCCEEEECHHHCCCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 99986989789988889------99829----999999999746885598620430599999999999759987875799
Q ss_pred CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-HCCCEEH
Q ss_conf 88651001231023443232443106346889999985228987997298888899999998-3888523
Q gi|254781020|r 217 GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSII-LGASLGG 285 (337)
Q Consensus 217 gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAla-lGAdaV~ 285 (337)
.. ...-|+..+..+. ....+++.|+.-|||+.- .+-+.+. .|++.+-
T Consensus 150 ~~-------------------~a~~g~~~L~~l~--~~a~~~i~Im~GgGI~~~-N~~~l~~~~g~~~~H 197 (202)
T pfam03932 150 PL-------------------SALEGLEKLASLV--AQAGGRISIMAGAGVNAE-NIAELRQLTGVAEVH 197 (202)
T ss_pred CC-------------------CHHHHHHHHHHHH--HHCCCCEEEEECCCCCHH-HHHHHHHHHCCCEEE
T ss_conf 78-------------------7667499999999--965998499957998999-999999971994885
No 382
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.57 E-value=15 Score=15.71 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHH
Q ss_conf 9999999987399717850478668899-999997699799945888865100123102344323244310634688999
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMD-IELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLE 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~-~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~ 250 (337)
.+.+..+-...+..++. .+...+++. ++.|++..+|.|.+|..-|.- ..- .|. ...
T Consensus 29 akvia~~l~d~GfeVi~--~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h---------~~l----------~~~--lve 85 (143)
T COG2185 29 AKVIARALADAGFEVIN--LGLFQTPEEAVRAAVEEDVDVIGVSSLDGGH---------LTL----------VPG--LVE 85 (143)
T ss_pred HHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHHCCCCEEEEEECCCHH---------HHH----------HHH--HHH
T ss_conf 19999999857937981--5875899999999986479889997344047---------899----------999--999
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH-HHHHH
Q ss_conf 998522898799729888889999999838885233-47999
Q gi|254781020|r 251 MARPYCNEAQFIASGGLRNGVDILKSIILGASLGGL-ASPFL 291 (337)
Q Consensus 251 ~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i-Gr~~l 291 (337)
.+++.+.+--++..||+....|.-+.-.+|.+.++- |+++.
T Consensus 86 ~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~ 127 (143)
T COG2185 86 ALREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIE 127 (143)
T ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCCCHH
T ss_conf 999819755488656866813679999818665468999899
No 383
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=49.98 E-value=16 Score=15.56 Aligned_cols=41 Identities=20% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999987399717850478668899999997699799945
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
.+..+++|+....|+++ .....+.++...+.++|||-.++-
T Consensus 60 ~~l~~~iR~~~~~PII~--lta~~~~~d~i~~l~~GADDYl~K 100 (232)
T PRK10955 60 IDTLKALRQTHQTPVIM--LTARGSELDRVLGLELGADDYLPK 100 (232)
T ss_pred CCCCCEEECCCCCCEEE--EECCCCHHHHHHHHHCCCCEEECC
T ss_conf 72301244078887899--805567688999997697576338
No 384
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=48.93 E-value=17 Score=15.46 Aligned_cols=11 Identities=0% Similarity=-0.324 Sum_probs=4.4
Q ss_pred HCCCCEEEECC
Q ss_conf 76997999458
Q gi|254781020|r 205 KSGIRYFDIAG 215 (337)
Q Consensus 205 ~aGad~i~v~~ 215 (337)
|.+.|-|.+++
T Consensus 44 E~~PDLILLDW 54 (226)
T TIGR02154 44 ERLPDLILLDW 54 (226)
T ss_pred CCCCCEEEECC
T ss_conf 07998899614
No 385
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase; InterPro: IPR005927 Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation. D-tagatose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde 3-phosphate The genes coding for the enzymes of the tagatose 6-phosphate pathway have been found to be part of the lac operon together with the genes coding for the lactose-phosphotransferase system and the phospho-beta-galactosidase in Lactococcus lactis, Staphlococcus aureus, and Streptococcus mutans. This family consists of proteins from Gram-positive bacteria. ; GO: 0009024 tagatose-6-phosphate kinase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=48.91 E-value=12 Score=16.25 Aligned_cols=68 Identities=19% Similarity=0.100 Sum_probs=45.0
Q ss_pred CCCCE-EEECCCCCCH--HHHHH-HHHHCCCEE--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 28987-9972988888--99999-998388852--334799998414668999999999999999999808985789614
Q gi|254781020|r 256 CNEAQ-FIASGGLRNG--VDILK-SIILGASLG--GLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 256 ~~~v~-IiadGGIr~g--~Dv~k-AlalGAdaV--~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
...+| |..+-|+..- .+-++ |--.||.+- .-||+.|.+ .|.-+++.=.+.-|.|+.-+|.+||+||.+
T Consensus 239 at~lPyiylsaGvsa~lfqetl~fah~~GakfnGvlCGratW~G------~v~~yi~~Ge~aareWlrttGf~nid~lnk 312 (325)
T TIGR01232 239 ATNLPYIYLSAGVSAKLFQETLKFAHEAGAKFNGVLCGRATWAG------AVEVYIKEGEDAAREWLRTTGFKNIDELNK 312 (325)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCC------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 41387445310203899999998877436511113422410122------046877503788998887404123788999
No 386
>pfam02662 FlpD Methyl-viologen-reducing hydrogenase, delta subunit. This family consist of methyl-viologen-reducing hydrogenase, delta subunit / heterodisulphide reductase. No specific functions have been assigned to this subunit. The aligned region corresponds to almost the entire delta chain sequence and contains 4 conserved cysteine residues. However, in two Archaeoglobus sequences this region corresponds to only the C-terminus of these proteins.
Probab=48.46 E-value=14 Score=15.86 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHCCCCEEEECC-CCCCC
Q ss_conf 6688999999976997999458-88865
Q gi|254781020|r 194 GLSSMDIELGLKSGIRYFDIAG-RGGTS 220 (337)
Q Consensus 194 ~~~~~~~~~a~~aGad~i~v~~-~gG~~ 220 (337)
-.++..+..|.+.|||+|.|.| |.|.+
T Consensus 39 rv~~~~il~A~~~GADGV~V~GC~~GdC 66 (124)
T pfam02662 39 RVNPSLILKALEKGADGVLVLGCHPGDC 66 (124)
T ss_pred CCCHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 6499999999986999799947888887
No 387
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=47.76 E-value=17 Score=15.35 Aligned_cols=166 Identities=14% Similarity=0.049 Sum_probs=65.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHEEECCCCCCCCHHHCCCEEEECCEEECCCEEEE-CH--HHHHHHH----CHH--
Q ss_conf 9999985302---5589747568863032455789981017462998989625686850-12--6633430----002--
Q gi|254781020|r 7 IDHINIVCKD---PGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLIS-SM--TGGNNKM----IER-- 74 (337)
Q Consensus 7 ~~~i~~a~~e---~~~~~n~~~fd~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~ia-pm--sgg~~~~----~~~-- 74 (337)
-|||++..|= .|+..|+..+.++.+-.++- .++...+.+..+-.. ..+++++ .+ .+..... ...
T Consensus 50 ~~Yi~AGAdvI~TNTFgAn~~~L~~~gle~~v~-eIN~aav~lAreAa~---g~~~~VAGsIGP~~~~~~~~~~~~~e~~ 125 (608)
T PRK08645 50 REYIEAGADVIQTNTYGANRIKLARYGLEDKVK-EINQAAVRLAKEAAE---GKDTYILGTIGPIRGDGPQGDLSLEEIL 125 (608)
T ss_pred HHHHHHCCCEEECCCCCCCHHHHHHCCCHHHHH-HHHHHHHHHHHHHHC---CCCEEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 999996199998178716799998738488999-999999999999817---9984999953887889999999999999
Q ss_pred -HHHHHHHHHHHHCCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCC---CCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf -5699999999809906605202211286688899999866401232202752---123679989999877650898576
Q gi|254781020|r 75 -INRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAV---QLNYDFGVQKAHQAVHVLGADGLF 150 (337)
Q Consensus 75 -~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 150 (337)
.....+.+..+.|.=+.+-++... -++............+.+++.+.... ....+.++..........+++++.
T Consensus 126 ~~f~eQ~~~L~e~GvD~illET~~d--l~E~~~Al~aar~~~~lPvi~s~t~~~~G~t~~G~~~~~a~~~l~~~gad~VG 203 (608)
T PRK08645 126 EEFREQIDALLEEGVDGLLLETFYD--LEELLEALKAARKKTDLPIIAQVAFHEDGVTQNGTSLEEALKQLVALGADVVG 203 (608)
T ss_pred HHHHHHHHHHHHCCCCEEEEEHHCC--HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf 9999999999757998999863059--99999999999975699799999988998089999799999998628998898
Q ss_pred ECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 253203566520688524307999999998739971785
Q gi|254781020|r 151 LHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLK 189 (337)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k 189 (337)
+||..+ .......++++...++.|+.++
T Consensus 204 --~NC~~G---------P~~m~~~l~~l~~~~~~pl~v~ 231 (608)
T PRK08645 204 --LNCGLG---------PYHMLEALKRIELPADAPLSAY 231 (608)
T ss_pred --ECCCCC---------HHHHHHHHHHHHHHCCCEEEEE
T ss_conf --879789---------9999999999874259818997
No 388
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit; InterPro: IPR006394 These sequences represent the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation. ; GO: 0016866 intramolecular transferase activity, 0019670 anaerobic glutamate catabolic process.
Probab=47.59 E-value=16 Score=15.62 Aligned_cols=42 Identities=5% Similarity=-0.084 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999998739971785047866889999999769979994588
Q gi|254781020|r 174 KIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 174 ~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
.+...-+..+..++=-++.. ...+.+..|++.+||+|.||.-
T Consensus 20 ~LDhaf~nagF~V~NlGv~~-~~~efi~AAiet~ADAilvSSl 61 (134)
T TIGR01501 20 VLDHAFRNAGFTVVNLGVLT-AQEEFIKAAIETDADAILVSSL 61 (134)
T ss_pred HHHHHHHCCCCEEEEECCCC-CHHHHHHHHHCCCCCEEEEECC
T ss_conf 88888732898898721316-1578887732289988998302
No 389
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=44.59 E-value=19 Score=15.06 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 88889999999838885233479
Q gi|254781020|r 267 LRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 267 Ir~g~Dv~kAlalGAdaV~iGr~ 289 (337)
..+..++-+.+..|++++.+|+=
T Consensus 210 ~~~~~~~~~~~~~G~~~i~~g~D 232 (249)
T TIGR03239 210 APVEADARRYLEWGATFVAVGSD 232 (249)
T ss_pred CCCHHHHHHHHHCCCCEEEEHHH
T ss_conf 79999999999869989996689
No 390
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=44.20 E-value=20 Score=15.02 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHCCCCEEEEC---CCCCCCCCCHHHH
Q ss_conf 799999999873997178504-78668899999997699799945---8888651001231
Q gi|254781020|r 171 LSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKSGIRYFDIA---GRGGTSWSRIESH 227 (337)
Q Consensus 171 ~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~aGad~i~v~---~~gG~~~~~~~~~ 227 (337)
..+.++.+++.++.|+-+--- .++........+++||+|.|.-. -.+|++-.+.++.
T Consensus 187 ayelVk~iK~~~~~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtm 247 (472)
T COG5016 187 AYELVKAIKKELPVPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETM 247 (472)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHH
T ss_conf 9999999997459706985045556179999999981764222100455578889958999
No 391
>TIGR00284 TIGR00284 dihydropteroate synthase-related protein; InterPro: IPR005236 The proteins of this family have been found so far only in the four archaeal species. The central region of the proteins shows considerable homology to the amino-terminal half of dihydropteroate synthases. .
Probab=43.68 E-value=20 Score=14.97 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHEEECCCCCCCCHHHCCCE--EEEC-CE--EECCCEEEECHHHHHHH-------------HCHHHHHH
Q ss_conf 5589747568863032455789981017462--9989-89--62568685012663343-------------00025699
Q gi|254781020|r 17 PGIDRNKKFFDDWHLIHRALPEISFDEVDPS--VEFL-GK--KLSFPLLISSMTGGNNK-------------MIERINRN 78 (337)
Q Consensus 17 ~~~~~n~~~fd~~~l~p~~l~~~~~~~vdls--t~i~-G~--~l~~Pv~iapmsgg~~~-------------~~~~~~~~ 78 (337)
.-+.+.+..--|+.|+|-..++ |...|+-. .+.| |. .+.+|.++-...-|... .+..+++.
T Consensus 54 ~~L~~~~kd~~D~~l~pGlvrg-Dak~veevtG~~~fKgT~ea~diP~~ie~L~~GikLsT~e~Ad~~~~ei~~~~~ee~ 132 (529)
T TIGR00284 54 DKLEKKLKDSVDYVLVPGLVRG-DAKVVEEVTGVKVFKGTEEAVDIPDVIEALKKGIKLSTEESADKVVKEIKRDKLEEK 132 (529)
T ss_pred HHHHHHHHCCCCEEEECCCHHH-HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8764543146476884770010-023210025402224767720357999996268866752348999999887544577
Q ss_pred HHHHHHHH----CCEEECCCCHHHHCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
Q ss_conf 99999980----99066052022112866888999998664012322027521236799899998776508985762532
Q gi|254781020|r 79 LAIAAEKT----KVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLN 154 (337)
Q Consensus 79 lA~aa~~~----g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (337)
+-++-.+. .+.|-+|+... ....|...++..+...+...+..++...-.....+++.+.+..
T Consensus 133 ~~K~~e~elGeG~i~f~ig~lki-------------~~kpPP~rv~~EI~~~~~~~~ke~~~~~~~~~r~gad~v~lG~- 198 (529)
T TIGR00284 133 LKKIEERELGEGDIAFKIGKLKI-------------TLKPPPLRVLAEIDNKVALDEKELEEKALRRLRDGADMVALGT- 198 (529)
T ss_pred HHHHHHHHCCCCCEEEEECCEEC-------------CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC-
T ss_conf 76688764388606899865773-------------8989861688325763222011178999999855996898457-
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 0356652068852430799999999873-9971785047866889999999769979994588
Q gi|254781020|r 155 PLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
..++.+...+.+.++.+++.. +.|+.+- ..+..++..++++||++|.--+.
T Consensus 199 -------~~~~~d~d~vk~kvk~a~d~~kD~pv~~d----t~~~~el~ea~~aGAs~v~~~~~ 250 (529)
T TIGR00284 199 -------GVFDDDADKVKEKVKIALDLLKDSPVSVD----TESLKELKEAVKAGASFVLSLDV 250 (529)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCHHHHHHHHHCCCCEEEECCC
T ss_conf -------54666778999999999972078606862----68878999998638656872471
No 392
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=43.06 E-value=21 Score=14.92 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=64.9
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 668899999-997699799945--8-888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
.++|+.++. ..+.|+|.+-++ | ||---. ...|.. -.-..+.|.++.+.-.++|++.-||=-.
T Consensus 172 yTdPeeA~~Fv~~TgvD~LAvaiGt~HG~YK~---------~~~P~~-----~~L~~~rL~eI~~~vp~~pLVLHGgS~v 237 (347)
T PRK09196 172 LTDPEEAADFVKKTQVDALAIAIGTSHGAYKF---------TRKPTG-----DVLAIDRIKEIHARIPNTHLVMHGSSSV 237 (347)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHCCCCCCCCC---------CCCCCC-----CCCCHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 68999999999974877030011013466657---------789972-----2036999999998456786787789688
Q ss_pred H----------------------HHHHHHHHHCCCEEHHHHHHHHHH--------CCCH------HHHHHHHHHHHHHHH
Q ss_conf 8----------------------999999983888523347999984--------1466------899999999999999
Q gi|254781020|r 270 G----------------------VDILKSIILGASLGGLASPFLKPA--------MDSS------DAVVAAIESLRKEFI 313 (337)
Q Consensus 270 g----------------------~Dv~kAlalGAdaV~iGr~~l~~~--------~~G~------~gv~~~l~~l~~el~ 313 (337)
. .++.+|+.+|-.=|.|.|-+-.+. ...+ +-.....+.+++-.+
T Consensus 238 p~~~~~~~~~~gg~~~~~~G~~~e~i~~ai~~Gv~KiNi~Tdl~~a~~~avr~~l~~np~~~Dpr~~~~~~~~a~~~~v~ 317 (347)
T PRK09196 238 PQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLASTGAIRRFLAENPSEFDPRKYLKPAMEAMKKICK 317 (347)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 67899999873676654469899999999980964663374899999999999998687868959999999999999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9999808985
Q gi|254781020|r 314 VSMFLLGTKR 323 (337)
Q Consensus 314 ~~m~~~G~~~ 323 (337)
.-|.++|+..
T Consensus 318 ~ki~~fGSaG 327 (347)
T PRK09196 318 ARYEAFGTAG 327 (347)
T ss_pred HHHHHHCCCC
T ss_conf 9999859867
No 393
>TIGR02701 shell_carb_anhy carboxysome shell carbonic anhydrase; InterPro: IPR014074 This entry describes a carboxysome shell protein that proves to be a novel class, designated epsilon, of carbonic anhydrase. It tends to be encoded near genes for RuBisCo and other carboxysome shell proteins..
Probab=40.28 E-value=9.8 Score=16.80 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=3.6
Q ss_pred HHCCCCEEEE
Q ss_conf 9769979994
Q gi|254781020|r 204 LKSGIRYFDI 213 (337)
Q Consensus 204 ~~aGad~i~v 213 (337)
++.-.|+|-|
T Consensus 256 ~DTDtDairv 265 (463)
T TIGR02701 256 LDTDTDAIRV 265 (463)
T ss_pred CCCCCCCCEE
T ss_conf 4236573166
No 394
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=40.05 E-value=23 Score=14.64 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECC-CCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 307999999998739971785047-86688999999976997999458
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEVG-CGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v~-~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
....+.++.+|+.++.|+-+-.=- .+........|+++|||.|.++-
T Consensus 183 ~~~~eLV~aLk~~~~lpI~~HtH~t~Gla~an~laAieAGaDivD~a~ 230 (463)
T PRK12331 183 YVAYELVKCIKENVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAI 230 (463)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999997449856998368875799999999984999996235
No 395
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=39.96 E-value=23 Score=14.63 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 8999987765089857625320356652068852430799999999873-997178504786688999999976997999
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
.+.+.+.......|.+.+.+..|.. +-.+..+++|+.. ..|+++ .....+.++...+.++|||-.+
T Consensus 36 ~~~al~~~~~~~~DlvilDi~LP~~-----------~G~~l~~~iR~~~~~~pII~--lta~~~~~d~i~~l~~GADDYl 102 (229)
T PRK11083 36 GLPALDKLRQQPPDLVILDVGLPDI-----------SGFELCRQLRAFHPALPVIF--LTARSDEVDRLVGLEIGADDYV 102 (229)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC-----------CHHHHHHHHHHHCCCCEEEE--EECCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999971899899973889998-----------76889999997089972999--8367898999999975998773
Q ss_pred EC
Q ss_conf 45
Q gi|254781020|r 213 IA 214 (337)
Q Consensus 213 v~ 214 (337)
.-
T Consensus 103 ~K 104 (229)
T PRK11083 103 AK 104 (229)
T ss_pred EC
T ss_conf 08
No 396
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=39.40 E-value=23 Score=14.58 Aligned_cols=84 Identities=12% Similarity=-0.005 Sum_probs=53.0
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCC--HHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 668899999-997699799945--8-88865100123102344323244310634--68899999852289879972988
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIP--TPLSLEMARPYCNEAQFIASGGL 267 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~--~~~al~~~~~~~~~v~IiadGGI 267 (337)
.++|++++. ..+.|+|.+-++ | ||--... .....| ..+.|.++++.-.++|+..-||=
T Consensus 163 yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~----------------~~~~~p~L~~d~L~~I~~~v~~vPLVLHGgS 226 (321)
T PRK07084 163 YTQPEEVEDFVTKTGVDSLAISIGTSHGAFKFK----------------PGECPPPLRFDILAEIEKRIPGFPIVLHGAS 226 (321)
T ss_pred CCCHHHHHHHHHHHCCCEEEEECCHHCCCCCCC----------------CCCCCCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 599999999999869985864201003676678----------------8888744369999999985779986852899
Q ss_pred C----------------------CHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf 8----------------------8899999998388852334799998
Q gi|254781020|r 268 R----------------------NGVDILKSIILGASLGGLASPFLKP 293 (337)
Q Consensus 268 r----------------------~g~Dv~kAlalGAdaV~iGr~~l~~ 293 (337)
- +-.|+-||+.+|=.=|.++|-+-++
T Consensus 227 ~~p~~~v~~~~~~Gg~~~~~~G~~de~i~~Ai~~GI~KvNi~Tdl~~a 274 (321)
T PRK07084 227 SVPQELVETINQHGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLA 274 (321)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf 882788777875288555678999999999998697699818078999
No 397
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=39.32 E-value=24 Score=14.57 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHCCCEEH
Q ss_conf 88999999983888523
Q gi|254781020|r 269 NGVDILKSIILGASLGG 285 (337)
Q Consensus 269 ~g~Dv~kAlalGAdaV~ 285 (337)
-...+.+.=.+||+.+-
T Consensus 358 q~~nv~~m~~~Ga~v~~ 374 (611)
T PRK13803 358 QAPNVERMKLLGANVIA 374 (611)
T ss_pred CCHHHHHHHHCCCEEEE
T ss_conf 76879999987987998
No 398
>pfam04476 DUF556 Protein of unknown function (DUF556). Family of uncharacterized, hypothetical prokaryotic proteins.
Probab=39.27 E-value=24 Score=14.57 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=63.2
Q ss_pred HHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEE-EEC------CCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 765089857625320356652068852430799999999873997178-504------7866889999999769979994
Q gi|254781020|r 141 VHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLL-KEV------GCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~-k~v------~~~~~~~~~~~a~~aGad~i~v 213 (337)
....+.|.+.+.+...... +...+.+....+.++.....+.++ ... +++...+....+.++|.+++-+
T Consensus 76 ~a~~GvDyVKVGl~~~~~~-----~~~~e~~~~~~~av~~~~~~~~vVav~~AD~~~~~~~~p~~i~~~a~~~G~~gvMi 150 (235)
T pfam04476 76 AAVSGADYIKVGLYGVKNY-----DEAVEVMKNVVRAVKDFDSSKIVVAAGYADAYRIGAVEPLDVPEIAADAGADIAML 150 (235)
T ss_pred HHCCCCCEEEEECCCCCCH-----HHHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 5503899899943788867-----99999999999998722788669999601033313888356799999759978998
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 58888651001231023443232443106346889999985228987997298888899999998388852334799
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
+...-.+. +.+.-....++........ ...+.+-.. |=-+-.|+-....++.|.+++=+++
T Consensus 151 DT~~K~g~--------------sl~d~~~~~~L~~fv~~a~-~~gl~~gLA-GSL~~~di~~l~~l~pd~~G~Rgav 211 (235)
T pfam04476 151 DTAIKDGT--------------TLFDHMKIEDLESFVKLAR-DNGLKVALA-GSISWEHIEPLKEIGTDIVGVRGAV 211 (235)
T ss_pred ECCCCCCC--------------CHHHHCCHHHHHHHHHHHH-HCCCEEEEE-CCCCHHHHHHHHHCCCCEEEECHHH
T ss_conf 74667897--------------6666499999999999999-759839984-5788888899986499989974553
No 399
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=39.20 E-value=24 Score=14.56 Aligned_cols=82 Identities=13% Similarity=0.053 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCH-HHHCCCCCCCCHHHHHCCCCHHHHHHH
Q ss_conf 9999999873997178504786688999999976997999458888651001-231023443232443106346889999
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRI-ESHRDLESDIGIVFQDWGIPTPLSLEM 251 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~-~~~r~~~~~~~~~~~~~gi~~~~al~~ 251 (337)
..++.|.+. +..+++ |+.-+++ ...++.--|||.+||..| +| .. .-.++..
T Consensus 209 nIlr~L~~r-G~~v~v--VP~~~~~---~~i~~~~PDGiflSNGPG----DPH~~------------------~~~~i~~ 260 (383)
T TIGR01368 209 NILRRLVKR-GCEVTV--VPYDTDA---EEIKKYNPDGIFLSNGPG----DPHAA------------------VEPAIET 260 (383)
T ss_pred HHHHHHHHC-CCEEEE--ECCCCCH---HHHHHHCCCEEEEECCCC----CCHHH------------------HHHHHHH
T ss_conf 589899766-987999--6789988---999865788899908798----80567------------------8999999
Q ss_pred HHHHCC-CCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 985228-98799729888889999999838885233
Q gi|254781020|r 252 ARPYCN-EAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 252 ~~~~~~-~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
++++-. ++|+.+ |= =++=+=|||+||+..-+
T Consensus 261 ~~~l~~~~~P~fG---IC-LGHQllALA~Ga~TyKl 292 (383)
T TIGR01368 261 VRELLEAKIPIFG---IC-LGHQLLALAFGAKTYKL 292 (383)
T ss_pred HHHHHHCCCCCCC---CC-HHHHHHHHHCCCCEEEC
T ss_conf 9999844897100---26-66899999738870004
No 400
>PTZ00066 pyruvate kinase; Provisional
Probab=38.14 E-value=25 Score=14.46 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=26.3
Q ss_pred HHHHHHHHCCCCEEEECCCCCC------------HHHHHHHHHHCCCEEHHH
Q ss_conf 9999985228987997298888------------899999998388852334
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRN------------GVDILKSIILGASLGGLA 287 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~------------g~Dv~kAlalGAdaV~iG 287 (337)
-+..|... ..|||...=+-. -.||+.|+.=|||+||+.
T Consensus 300 II~~c~~~--gKPVIvATqmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLS 349 (513)
T PTZ00066 300 MISKCNLQ--GKPIITATQMLESMIKNPRPTRAESTDVANAVLDGSDCVMLS 349 (513)
T ss_pred HHHHHHHC--CCCEEEECHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999975--996999742577740499987166778999998467778873
No 401
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=37.84 E-value=25 Score=14.43 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHHHHH
Q ss_conf 989999877650898576253203566520688524307999999998739971785047866-8899999997
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGL-SSMDIELGLK 205 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~-~~~~~~~a~~ 205 (337)
+.+..++.+++.++|.+-+|+=.. .....+...+-..+.++.+-...+.|+++-+.||.. +++...+|++
T Consensus 152 P~eWArk~Vk~fgadmvTiHlIsT---dPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAE 222 (403)
T COG2069 152 PGEWARKCVKKFGADMVTIHLIST---DPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAE 222 (403)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECC---CCCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH
T ss_conf 889999999984876599996137---86556779899999999999754868896689997649799999987
No 402
>PRK02227 hypothetical protein; Provisional
Probab=36.85 E-value=26 Score=14.34 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=47.2
Q ss_pred CHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH
Q ss_conf 88999999976997999458888651001231023443232443106346889999985228987997298888899999
Q gi|254781020|r 196 SSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILK 275 (337)
Q Consensus 196 ~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~k 275 (337)
..+....+.++|.+++-++...-.+. +.+.-....++........ ...+.+-..|-+ +..|+-.
T Consensus 133 p~~i~~~a~~~g~~gvMiDT~~Kdg~--------------sL~d~~~~~~L~~fv~~a~-~~gl~~gLAGSL-~~~di~~ 196 (239)
T PRK02227 133 PLDLPAIAAEAGFDGAMLDTAGKDGR--------------SLFDHMDEEELAEFVAEAR-AHGLMTALAGSL-KLEDIPA 196 (239)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCC--------------CHHHCCCHHHHHHHHHHHH-HCCCEEEEECCC-CHHHHHH
T ss_conf 67789999985998999863678887--------------5342389999999999999-759939984568-8788899
Q ss_pred HHHHCCCEEHHHHHH
Q ss_conf 998388852334799
Q gi|254781020|r 276 SIILGASLGGLASPF 290 (337)
Q Consensus 276 AlalGAdaV~iGr~~ 290 (337)
...++.|++++=+++
T Consensus 197 L~~l~Pd~lG~Rga~ 211 (239)
T PRK02227 197 LKRLGPDILGVRGAV 211 (239)
T ss_pred HHHCCCCEEEECHHH
T ss_conf 975699989965654
No 403
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.53 E-value=26 Score=14.31 Aligned_cols=91 Identities=9% Similarity=-0.056 Sum_probs=46.6
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH-H
Q ss_conf 999999998739971785047866889999999769979994588886510012310234432324431063468899-9
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL-E 250 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al-~ 250 (337)
...+..+-+..+..++--+ .++...+.++.+.+..+|.|.+|..-+.+ ++....+ .
T Consensus 16 ~~iv~~~l~~~G~~V~~lG-~~vp~e~~v~~a~~~~~d~I~lS~~~~~~----------------------~~~~~~~i~ 72 (119)
T cd02067 16 KNIVARALRDAGFEVIDLG-VDVPPEEIVEAAKEEDADAIGLSGLLTTH----------------------MTLMKEVIE 72 (119)
T ss_pred HHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHCCCCEEEEECCCCCC----------------------HHHHHHHHH
T ss_conf 9999999997899899899-99999999999997099999996220242----------------------689999999
Q ss_pred HHHHHC-CCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 998522-898799729888889999999838885233
Q gi|254781020|r 251 MARPYC-NEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 251 ~~~~~~-~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
.+++.+ ++++|+.-|.+- ..|.-.+-.+|||++.-
T Consensus 73 ~l~~~g~~~i~v~vGG~~~-~~~~~~~~~~Gad~~~~ 108 (119)
T cd02067 73 ELKEAGLDDIPVLVGGAIV-TRDFKFLKEIGVDAYFG 108 (119)
T ss_pred HHHHCCCCCCEEEEECCCC-CHHHHHHHHCCCCEEEC
T ss_conf 9997699998599989989-74399999869979977
No 404
>KOG0623 consensus
Probab=36.41 E-value=26 Score=14.30 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=51.2
Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHH----
Q ss_conf 9999999769979994588886510012310234432324431063468899999852289879972988888999----
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDI---- 273 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv---- 273 (337)
+.+.+..+-|||-+..-|--+ +|.- | ..-.|+++.|...+. ..=+|+-.-||||.-.|+
T Consensus 273 ~Laq~Yyq~GADEv~FLNITs--------FRdc---P-----l~D~PMlqVL~qaak-tVFVPLTVGGGIrD~~D~dGt~ 335 (541)
T KOG0623 273 DLAQQYYQDGADEVSFLNITS--------FRDC---P-----LGDLPMLQVLRQAAK-TVFVPLTVGGGIRDFTDADGTY 335 (541)
T ss_pred HHHHHHHHCCCCEEEEEEECC--------CCCC---C-----CCCCHHHHHHHHHHC-EEEEEEEECCCCCCCCCCCCCC
T ss_conf 899999864786168973022--------2678---7-----666749999998523-0788776357633345688767
Q ss_pred -------HHHHHHCCCEEHHHHHHHHHHC
Q ss_conf -------9999838885233479999841
Q gi|254781020|r 274 -------LKSIILGASLGGLASPFLKPAM 295 (337)
Q Consensus 274 -------~kAlalGAdaV~iGr~~l~~~~ 295 (337)
...+..|||-|.||+-..|++.
T Consensus 336 ~palEVA~~YFRSGADKvSIGsDAVyAAE 364 (541)
T KOG0623 336 YPALEVAAEYFRSGADKVSIGSDAVYAAE 364 (541)
T ss_pred CHHHHHHHHHHHCCCCEEEECHHHHHHHH
T ss_conf 20489999998647861310506778899
No 405
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=35.88 E-value=27 Score=14.24 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 28987997298888899999998388852334
Q gi|254781020|r 256 CNEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
+..+|||+-|=|++-.||-.||..||-+|--.
T Consensus 142 ~t~~piIAGGLi~t~Eev~~Al~aGA~avSTs 173 (181)
T COG1954 142 KTHIPIIAGGLIETEEEVREALKAGAVAVSTS 173 (181)
T ss_pred HCCCCEEECCCCCCHHHHHHHHHHCCEEEEEC
T ss_conf 55897773243053999999997176798514
No 406
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=35.18 E-value=27 Score=14.18 Aligned_cols=116 Identities=12% Similarity=0.084 Sum_probs=66.4
Q ss_pred CCCHHHHHH-HHHCCCCEEEEC--C-CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 668899999-997699799945--8-888651001231023443232443106346889999985228987997298888
Q gi|254781020|r 194 GLSSMDIEL-GLKSGIRYFDIA--G-RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRN 269 (337)
Q Consensus 194 ~~~~~~~~~-a~~aGad~i~v~--~-~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~ 269 (337)
.++|+.+.. ..+.|+|.+-++ | ||---. ...|. ..+.....|.++.+.-.++|+..-||=-.
T Consensus 172 yT~Peea~~Fv~~TgvD~LAvaiGt~HG~YK~---------~~~p~-----~~~l~~~~L~~i~~~~~~~pLVLHGgS~v 237 (347)
T PRK13399 172 LTDPDQAVDFVQRTGVDALAIAIGTSHGAYKF---------TRKPD-----GDILAIDRIEEIHARLPNTHLVMHGSSSV 237 (347)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC---------CCCCC-----CCCCCHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 48999999999986898586440534478778---------88998-----55237999999997378987687479788
Q ss_pred H----------------------HHHHHHHHHCCCEEHHHHHHHHHHC--------CCH------HHHHHHHHHHHHHHH
Q ss_conf 8----------------------9999999838885233479999841--------466------899999999999999
Q gi|254781020|r 270 G----------------------VDILKSIILGASLGGLASPFLKPAM--------DSS------DAVVAAIESLRKEFI 313 (337)
Q Consensus 270 g----------------------~Dv~kAlalGAdaV~iGr~~l~~~~--------~G~------~gv~~~l~~l~~el~ 313 (337)
+ .++-+|+.+|-.=|.+.|-+-++.. +.+ .-+....+.+++-++
T Consensus 238 p~~~~~~~~~~GG~~~~~~G~~~e~i~~AI~~GV~KiNi~Tdl~~A~~~~vr~~l~~~p~~~Dpr~~l~~~~~am~~~v~ 317 (347)
T PRK13399 238 PQELQEIINAYGGDMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLAEHPSEFDPRKALKPAMKAMTSLCK 317 (347)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 47888999970776667889999999999981977998583778999999999998597768908999999999999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9999808985
Q gi|254781020|r 314 VSMFLLGTKR 323 (337)
Q Consensus 314 ~~m~~~G~~~ 323 (337)
.-|.++|+.+
T Consensus 318 ~ki~~fGS~g 327 (347)
T PRK13399 318 QRFEAFGTAG 327 (347)
T ss_pred HHHHHHCCCC
T ss_conf 9999849977
No 407
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=34.99 E-value=28 Score=14.16 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=15.1
Q ss_pred HHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8999999976997999458888
Q gi|254781020|r 197 SMDIELGLKSGIRYFDIAGRGG 218 (337)
Q Consensus 197 ~~~~~~a~~aGad~i~v~~~gG 218 (337)
.+.+..+.++|++.+.|+++..
T Consensus 159 l~~l~~L~~~Gv~slkIegr~~ 180 (232)
T pfam01136 159 IEELPELLEAGVDSLKIEGRMK 180 (232)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999999980998899984159
No 408
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase; InterPro: IPR010121 Pyruvate phosphate dikinase (PPDK, or pyruvate orthophosphate dikinase) is found in plants, bacteria and archaea. The amino acid sequence identity between bacterial and plant enzymes is high, and they are similar in sequence to other PEP-utilizing enzymes. PPDK catalyses the reversible conversion of ATP and pyruvate to AMP and PEP (phosphoenolpyruvate). In bacteria such as Clostridium symbiosum, PPDK uses Mg2+ and NH4+ ions as cofactors . The enzyme has three domains: the N- and C-terminal domains each have an active site centre that catalyses a different step in the reaction, and the middle domain has a carrier histidine residue that moves between the two active centres. In plants, PPDK is localised predominantly in chloroplast stroma where it catalyses the rate-limiting step in the C4 photosynthetic pathway, namely the synthesis of PEP, which acts as the primary CO2 acceptor in C4 photosynthesis . PPDK activity in C4 plants is strictly regulated by light, its activity decreasing in darkness. This response is regulated by phosphorylation and dephosphorylation of the enzyme using ADP; such regulation is not seen in the bacterial form of the enzyme. PPDK is also found in C3 plants, but it is not known to have a photosynthetic role .; GO: 0050242 pyruvate phosphate dikinase activity.
Probab=34.98 E-value=23 Score=14.57 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=25.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 2898799729888889999999838885233479
Q gi|254781020|r 256 CNEAQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
-.++.|-+.. -|+.|+.+|+-.||..++++|.
T Consensus 569 ~r~LkVRANA--dTP~Da~~A~~fGAeGIGLCRT 600 (920)
T TIGR01828 569 IRKLKVRANA--DTPEDAKTARKFGAEGIGLCRT 600 (920)
T ss_pred HCCCEEEECC--CCHHHHHHHHHHCCCCCCCCCC
T ss_conf 3115144057--8778999999717474042100
No 409
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=34.91 E-value=28 Score=14.15 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=7.0
Q ss_pred HCCCCEEEECCC
Q ss_conf 769979994588
Q gi|254781020|r 205 KSGIRYFDIAGR 216 (337)
Q Consensus 205 ~aGad~i~v~~~ 216 (337)
..++|.+.++.+
T Consensus 184 ~~~~Dsvs~~~s 195 (338)
T cd06502 184 KSGVDSVSFCLS 195 (338)
T ss_pred HHHCCEEEEECC
T ss_conf 641878999665
No 410
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=34.56 E-value=28 Score=14.12 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=62.9
Q ss_pred HHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC----CHHHHHHHHHCCCCEEEE
Q ss_conf 9877650898576253203566520688524307999999998739971785047866----889999999769979994
Q gi|254781020|r 138 HQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGL----SSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~----~~~~~~~a~~aGad~i~v 213 (337)
....+..|+|+.-...+.- . .+.-+|+.++-+.+.+.++.|+++--++.-+ .+|..+++++.--..+-|
T Consensus 86 ~~~a~~~G~dg~L~vtPyY---N----KP~q~Gl~~HFkaia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~~~NI~ai 158 (288)
T TIGR00674 86 TKFAEKLGVDGFLVVTPYY---N----KPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLEPETVKRLAEEPNNIVAI 158 (288)
T ss_pred HHHHHHCCCCEEECCCCCC---C----CCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 9999868956884588755---1----88821389999999987169889842876410178628999973016770688
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC-CCCEEEECCCCCCHHHH--HHHHHHCCCEEHHHH
Q ss_conf 5888865100123102344323244310634688999998522-89879972988888999--999983888523347
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC-NEAQFIASGGLRNGVDI--LKSIILGASLGGLAS 288 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~-~~v~IiadGGIr~g~Dv--~kAlalGAdaV~iGr 288 (337)
--.+| -+.++..+. +... +++.|. +|.|. ...+++||..|=--.
T Consensus 159 KEa~g-----------------------~l~~~~~i~--~~~p~~dF~vl------sGDD~l~l~~~~~Gg~GVISV~ 205 (288)
T TIGR00674 159 KEATG-----------------------NLERISEIK--AITPDDDFVVL------SGDDALTLPILALGGKGVISVT 205 (288)
T ss_pred EECCC-----------------------CHHHHHHHH--HHCCCCCEEEE------ECCCCHHHHHHHHCCCEEEEHH
T ss_conf 72688-----------------------889999999--86689853888------4786113699981896167300
No 411
>TIGR00734 hisAF_rel hisA/hisF family protein; InterPro: IPR004650 This family of proteins has so far been found in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. Proteins are homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. However, the function of proteins in this group is unknown..
Probab=33.69 E-value=29 Score=14.03 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=26.9
Q ss_pred CEEEECCCCCCHHHHHHHHH-HCCCEEHHHHHHHHH
Q ss_conf 87997298888899999998-388852334799998
Q gi|254781020|r 259 AQFIASGGLRNGVDILKSII-LGASLGGLASPFLKP 293 (337)
Q Consensus 259 v~IiadGGIr~g~Dv~kAla-lGAdaV~iGr~~l~~ 293 (337)
-||+.-|||.-- ...+.+. ||.++|.|||++.++
T Consensus 194 ~PV~~GGGi~g~-EdlEl~~~mGv~avLvatA~HkG 228 (230)
T TIGR00734 194 RPVILGGGIKGV-EDLELLKEMGVSAVLVATAVHKG 228 (230)
T ss_pred CCEEECCCCCCC-CHHHHHHHCCCCEEEEEEEECCC
T ss_conf 871406873675-10788885687657553210047
No 412
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=33.39 E-value=29 Score=14.00 Aligned_cols=86 Identities=14% Similarity=-0.038 Sum_probs=48.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHCCCCEEEECCC-CCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 999999998739971785047866889999-999769979994588-886510012310234432324431063468899
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIE-LGLKSGIRYFDIAGR-GGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~-~a~~aGad~i~v~~~-gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
...++.+-+.++..+. .+ .+++.+. .+.+...|.|+++-. .+ ..|+ +.+
T Consensus 11 ~~~l~~~L~~~g~~v~--~a---~~g~~al~~~~~~~~dlvi~Di~mP~---------------------~dG~---el~ 61 (111)
T pfam00072 11 RELLRQLLEKEGYVVA--EA---DDGEEALELLKEKRPDLILLDIRMPG---------------------MDGL---ELL 61 (111)
T ss_pred HHHHHHHHHHCCCEEE--EE---CCHHHHHHHHHHCCCCEEEEECCCCC---------------------CCHH---HHH
T ss_conf 9999999998899999--98---99999999998479989999536899---------------------5015---799
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 9998522898799729888889999999838885233
Q gi|254781020|r 250 EMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 250 ~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
..+++....+|||.-+|-.+-.+..+|+.+||+....
T Consensus 62 ~~ir~~~~~~piI~~T~~~~~~~~~~a~~~Ga~~yl~ 98 (111)
T pfam00072 62 RRIRRRPPTTPVIVLTAHGDEEDAVEALKAGANDFLS 98 (111)
T ss_pred HHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 9997359998099997508999999999779877994
No 413
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.18 E-value=30 Score=13.98 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=53.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHH----HHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHH
Q ss_conf 99999998739971785047866889999----99976997999458888651001231023443232443106346889
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSSMDIE----LGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLS 248 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~~~~~----~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~a 248 (337)
+.++.+ ..++.|+.+|.- ...+++++. +....|.+-|++--+|-. .-... .|. .....+
T Consensus 113 dLl~a~-a~t~kpV~iKkg-q~~s~~~~~~a~eki~~~Gn~~i~l~ERG~~-gy~~~-~rn-------------~~d~~~ 175 (250)
T PRK13397 113 EFLKTL-SHIDKPILFKRG-LMATIEEYLGALSYLQDTGKSNIILCERGVR-GYDVE-TRN-------------MLDIMA 175 (250)
T ss_pred HHHHHH-HHHCCEEEECCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCC-CCC-------------CHHHHH
T ss_conf 999998-730980897887-7799999999999999659982899828987-55563-125-------------700777
Q ss_pred HHHHHHHCCCCEEEECCCC----CCHHH--HHHHHHHCCCEEHHHH
Q ss_conf 9999852289879972988----88899--9999983888523347
Q gi|254781020|r 249 LEMARPYCNEAQFIASGGL----RNGVD--ILKSIILGASLGGLAS 288 (337)
Q Consensus 249 l~~~~~~~~~v~IiadGGI----r~g~D--v~kAlalGAdaV~iGr 288 (337)
++..++ ...+|||.|--= |..-- +-.|+++|+|.+++=+
T Consensus 176 ip~~~~-~~~~PVi~D~SHs~G~r~~v~~la~aA~a~G~dGlfiE~ 220 (250)
T PRK13397 176 VPIIQQ-KTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEV 220 (250)
T ss_pred HHHHHH-HCCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEE
T ss_conf 799996-159998992875478825289999999983999899982
No 414
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=33.04 E-value=30 Score=13.97 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=19.0
Q ss_pred HHCCCCEEEECCCCCCHHH---HHHHHHHCCCEEHHH
Q ss_conf 5228987997298888899---999998388852334
Q gi|254781020|r 254 PYCNEAQFIASGGLRNGVD---ILKSIILGASLGGLA 287 (337)
Q Consensus 254 ~~~~~v~IiadGGIr~g~D---v~kAlalGAdaV~iG 287 (337)
+..+++||..=-==.+|.= +++|.-+|||.|=+.
T Consensus 749 e~~PD~PiH~HTHDtSG~ava~~~aaveAGvDvvDvA 785 (1169)
T TIGR01235 749 EKIPDLPIHLHTHDTSGAAVASMLAAVEAGVDVVDVA 785 (1169)
T ss_pred HCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEHHH
T ss_conf 3279985686266612689999999987588611456
No 415
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=33.03 E-value=30 Score=13.97 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 99899998776508985762532035665206885243079999999987399717850478668899999997699799
Q gi|254781020|r 132 FGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
.+.+++.+......+|.+.+.+..|... -.+.++++++..+.|+++ +....+.+....+.++|||..
T Consensus 41 ~~~~eal~~~~~~~~DliilDi~lp~~~-----------Gl~l~~~lr~~~~~piI~--lta~~~~~~~~~al~~GAddY 107 (240)
T PRK10710 41 SHGDEVLPYVRQTPPDLILLDLMLPGTD-----------GLTLCREIRRFSDIPIVM--VTAKIEEIDRLLGLEIGADDY 107 (240)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCC-----------CCCCHHHHHCCCCCCEEE--ECCCCCHHHHHHHHHCCCCEE
T ss_conf 9999999999737998999879998887-----------763211221157646899--816788899999998699876
Q ss_pred EEC
Q ss_conf 945
Q gi|254781020|r 212 DIA 214 (337)
Q Consensus 212 ~v~ 214 (337)
+.-
T Consensus 108 l~K 110 (240)
T PRK10710 108 ICK 110 (240)
T ss_pred ECC
T ss_conf 007
No 416
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=33.00 E-value=30 Score=13.96 Aligned_cols=174 Identities=12% Similarity=0.001 Sum_probs=71.3
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 99998776508985762532035665206885243079999999987--3997178504786688999999976997999
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSA--MDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+......... .+.+.+.+..|.. .-.+..+++|.. ...|+++ ...-.+.++-....++|||=.+
T Consensus 34 ~~a~~~~~~~-~dlviLD~~lP~~-----------dG~~~~~~iR~~~~~~~PIi~--Lta~~~~~d~v~gl~~GADDYl 99 (229)
T COG0745 34 EEALEAAREQ-PDLVLLDLMLPDL-----------DGLELCRRLRAKKGSGPPIIV--LTARDDEEDRVLGLEAGADDYL 99 (229)
T ss_pred HHHHHHHHCC-CCEEEEECCCCCC-----------CHHHHHHHHHHCCCCCCCEEE--EECCCCHHHHHHHHHCCCHHHC
T ss_conf 9999997269-9999998899985-----------689999999851689998899--9668728889999975634233
Q ss_pred ECCCCC-CCCCCHHHH-CCCCC-CC--CHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC----CHHHHHHHHHHCCCE
Q ss_conf 458888-651001231-02344-32--3244310634688999998522898799729888----889999999838885
Q gi|254781020|r 213 IAGRGG-TSWSRIESH-RDLES-DI--GIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR----NGVDILKSIILGASL 283 (337)
Q Consensus 213 v~~~gG-~~~~~~~~~-r~~~~-~~--~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr----~g~Dv~kAlalGAda 283 (337)
.-=... --.+.+... |+... .. .......|--.+ . ...-.+...|-.- +-.++++.|+.=+.-
T Consensus 100 ~KPf~~~EL~ARi~a~lRR~~~~~~~~~~~~~~~g~l~~-------d-~~~~~v~~~~~~l~Lt~~Ef~lL~~L~~~~g~ 171 (229)
T COG0745 100 TKPFSPRELLARLRALLRRNAGASRAEASEVLVFGDLTL-------D-PDTRTVTLNGRELTLTPKEFELLELLARHPGR 171 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCEEE-------E-CCCCEEEECCEEECCCHHHHHHHHHHHHCCCC
T ss_conf 488998999999999967365665545465079889999-------8-02198998998731788999999999966995
Q ss_pred EHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHCCC
Q ss_conf 233479999841466--899999999999999999980898--578961496
Q gi|254781020|r 284 GGLASPFLKPAMDSS--DAVVAAIESLRKEFIVSMFLLGTK--RVQELYLNT 331 (337)
Q Consensus 284 V~iGr~~l~~~~~G~--~gv~~~l~~l~~el~~~m~~~G~~--~i~el~~~~ 331 (337)
|.- |..+...+.|. +...+.++....-||.-+...+.. -|+-.++.-
T Consensus 172 v~s-R~~L~~~vw~~~~~~~~rtvdvhI~rLR~Kl~~~~~~~~~I~TvrG~G 222 (229)
T COG0745 172 VLS-REQLLEAVWGYDFEVDSRTVDVHISRLRKKLEKDPGAGRLIRTVRGVG 222 (229)
T ss_pred CCC-HHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCEEEEEECEE
T ss_conf 268-999999860866687643305998899997335678777299994526
No 417
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=32.13 E-value=31 Score=13.88 Aligned_cols=74 Identities=11% Similarity=0.106 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
.+.+++..+.....++.+.++-|.+.+... .-....++.+.+..+.||++- +++...-- -.++..++|-|.-
T Consensus 32 ~k~~~~~~~~~~~ka~~l~i~SPGG~V~~S-----~Eiy~~l~~~~k~~kkPVv~~-~g~~aaSG--GYYia~aa~~I~A 103 (224)
T TIGR00706 32 LKKIKRIKDDKSIKALVLRIDSPGGTVVAS-----EEIYEKLKKLKKEAKKPVVAS-MGGVAASG--GYYIAMAADEIVA 103 (224)
T ss_pred HHHHHHHHHCCCEEEEEEEEECCCCCCHHH-----HHHHHHHHHHHHHCCCEEEEE-ECCCCHHH--HHHHHHCCCEEEE
T ss_conf 999887740897006999863799975226-----899999986345308858998-36832267--9999813882463
Q ss_pred CC
Q ss_conf 58
Q gi|254781020|r 214 AG 215 (337)
Q Consensus 214 ~~ 215 (337)
+.
T Consensus 104 ~~ 105 (224)
T TIGR00706 104 NP 105 (224)
T ss_pred CC
T ss_conf 47
No 418
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=32.12 E-value=31 Score=13.88 Aligned_cols=107 Identities=16% Similarity=0.009 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC---CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHH
Q ss_conf 79999999987399717850478668899999997699799945---888865100123102344323244310634688
Q gi|254781020|r 171 LSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA---GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPL 247 (337)
Q Consensus 171 ~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~---~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~ 247 (337)
....++.++.....-..- .+.+.+++++..+.++|+|.|+.- +.||.-+++. .. ... --.+.+.
T Consensus 142 ~~~Evemlr~A~~k~l~t--~~yV~s~~eAqa~~~aGadiiv~hmg~ttgG~Igar~-----~~-----Sl~-~~vel~~ 208 (276)
T COG5564 142 YGLEVEMLREAHAKDLLT--TPYVFSFEEAQAMTKAGADIIVAHMGLTTGGLIGARS-----AL-----SLA-DCVELIE 208 (276)
T ss_pred HHHHHHHHHHHHHCCCCC--CCEECCHHHHHHHHHCCCCEEEECCCCCCCCEECCCC-----CC-----CHH-HHHHHHH
T ss_conf 688999999998636433--4243688899999870730465034431255012556-----56-----788-8999999
Q ss_pred HHHH-HHHHCCCC-EEEECCCCCCHHHHHHHH--HHCCCEEHHHHHH
Q ss_conf 9999-98522898-799729888889999999--8388852334799
Q gi|254781020|r 248 SLEM-ARPYCNEA-QFIASGGLRNGVDILKSI--ILGASLGGLASPF 290 (337)
Q Consensus 248 al~~-~~~~~~~v-~IiadGGIr~g~Dv~kAl--alGAdaV~iGr~~ 290 (337)
...+ .+.++.++ ++.--|=|.++.|.---+ |-|+|..+=++.+
T Consensus 209 ~~~~aar~v~kd~i~l~~GGPi~~p~da~yi~d~c~~~~gfygassm 255 (276)
T COG5564 209 LAAEAARGVRKDVIPLCHGGPISMPEDARYILDRCPGCDGFYGASSM 255 (276)
T ss_pred HHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99999754301304531478868813557787517788861363224
No 419
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=31.75 E-value=31 Score=13.84 Aligned_cols=36 Identities=8% Similarity=0.054 Sum_probs=30.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHC-CCEEHHHHHHHH
Q ss_conf 2898799729888889999999838-885233479999
Q gi|254781020|r 256 CNEAQFIASGGLRNGVDILKSIILG-ASLGGLASPFLK 292 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~Dv~kAlalG-AdaV~iGr~~l~ 292 (337)
..+++|+.-|++.. .++-+.+.++ .|.+.||++.|.
T Consensus 197 ~~~v~iLYGGSV~~-~N~~~i~~~~~vdG~LvG~ASl~ 233 (242)
T cd00311 197 AEKVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred CCCCCEEECCCCCH-HHHHHHHCCCCCCEEEECHHHCC
T ss_conf 36754896077898-89999956899997885357678
No 420
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=31.52 E-value=32 Score=13.82 Aligned_cols=158 Identities=12% Similarity=0.100 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
.++..........|-+.+.++.|.. .-.+.+++++...+...++- ..+..++..+..+.++||++++.
T Consensus 38 ~~~~~~~l~~~~~DvvllD~~lp~~-----------~g~~~i~~i~~~~p~~~ilv-ls~~~~~~~~~~a~~~Ga~g~l~ 105 (210)
T PRK09935 38 SRITIDYLRTYPVDLVILDIELPGT-----------DGFTLLKRIKQIQETVKVLF-LSSKSECFYAGRAIRAGANGFVS 105 (210)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC-----------CCCCHHHHHHHHCCCCCEEE-EECCCCHHHHHHHHHCCCCEEEE
T ss_conf 9999999974799999988999998-----------86405678987389970899-71767299999999668776886
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCC-CCH-HHHHHHHHHHC----CCCEEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 58888651001231023443232443106-346-88999998522----8987997298888899999998388852334
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWG-IPT-PLSLEMARPYC----NEAQFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~g-i~~-~~al~~~~~~~----~~v~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
-+........ ..+... .+.. +|. ........... ...++ =.+-.+|++.++-|-+.-.|+
T Consensus 106 K~~~~~~l~~--ai~~v~-------~G~~~~~~~~~~~~~~~~~~~~~~~~~~L-----t~RE~eVL~ll~~G~snkeIA 171 (210)
T PRK09935 106 KRKDLNDIYN--AVQMIL-------SGYSFFPSETLNFIKSNKCSKGSSTDMPL-----SNREVTVLRYLANGLSNKEIA 171 (210)
T ss_pred CCCCHHHHHH--HHHHHH-------CCCCCCCHHHHHHHHHCCCCCCCCCCCCC-----CHHHHHHHHHHHCCCCHHHHH
T ss_conf 7899999999--999998-------59953698999998734366665567899-----989999999998699999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 79999841466899999999999999999980898578961
Q gi|254781020|r 288 SPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 288 r~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
.-+- -. -.+.+.-++..|..+|++|-.|+-
T Consensus 172 ~~L~----iS-------~~TV~~h~~~I~~KL~v~nr~elv 201 (210)
T PRK09935 172 EQLL----LS-------NKTISAHKSNIYGKLGLHSIVELI 201 (210)
T ss_pred HHHC----CC-------HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 8949----88-------999999999999981999999999
No 421
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=31.46 E-value=32 Score=13.81 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=12.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHCC
Q ss_conf 87997298888899999998388
Q gi|254781020|r 259 AQFIASGGLRNGVDILKSIILGA 281 (337)
Q Consensus 259 v~IiadGGIr~g~Dv~kAlalGA 281 (337)
.-+..+|.+-+..|.-..+..+.
T Consensus 372 av~~~~~~~i~~~~l~~~~~~~~ 394 (457)
T PRK11361 372 AVVMNSGPIIFSEDLPPQIRQPV 394 (457)
T ss_pred HHHHCCCCCCCHHHCCHHHHCCC
T ss_conf 99828998156676848661555
No 422
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=31.04 E-value=32 Score=13.77 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHCCCCEEEECC---CCCCCCCCHHH
Q ss_conf 30799999999873997178504-786688999999976997999458---88865100123
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKSGIRYFDIAG---RGGTSWSRIES 226 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~aGad~i~v~~---~gG~~~~~~~~ 226 (337)
....+.++.+|+..+.|+-+-.= .++........|+++|||.|.++- .||++-.+.+.
T Consensus 192 ~~a~~LV~~lK~~~~iPI~~HtH~t~Gla~a~~laAieAGaDiVD~Ai~~~s~gtSqP~~~s 253 (468)
T PRK12581 192 KAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATES 253 (468)
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHH
T ss_conf 99999999998367986599825887549999999998199999744645357988866999
No 423
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=30.95 E-value=32 Score=13.76 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 9998776508985762532035665206885243079999999987399717850478668899999997699799945
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
+..+..+....|-+.+.+ .++ +-++-++++.+..........++. + ...-....+++|++.|||..++-
T Consensus 39 ~a~~~I~~q~PD~vvLDI------IMP--hLDGiGVLEKl~~~~~~~~P~vi~-L-sAfGQE~ITqrA~~LGADYYvlK 107 (270)
T TIGR02875 39 DALELIKEQKPDVVVLDI------IMP--HLDGIGVLEKLNEIELKARPRVIM-L-SAFGQEKITQRAVALGADYYVLK 107 (270)
T ss_pred HHHHHHHHCCCCEEEECC------CCC--CCCHHHHHHHHHHHHHHCCCCEEE-E-ECCCHHHHHHHHHHCCCCCEEEC
T ss_conf 999999608998999515------043--000579999988988744895888-5-22375589999997289815665
No 424
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=30.36 E-value=33 Score=13.70 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 79972988888999999983888523
Q gi|254781020|r 260 QFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 260 ~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
....|||+.+.-=+-+|+.+|||-+-
T Consensus 146 ~~yvDGG~~~n~Pv~~a~~~Gad~ii 171 (175)
T cd07228 146 RLLVDGGVVNPIPVSVARALGADIVI 171 (175)
T ss_pred EEEEECCCCCCHHHHHHHHCCCCEEE
T ss_conf 89987886776109999977959899
No 425
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=30.09 E-value=22 Score=14.76 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.0
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 89999999838885233479999
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
..|.--||..||+.|=|||++++
T Consensus 202 S~D~e~AI~~GaT~VRIGtaiFg 224 (228)
T COG0325 202 SNDYEIAIAEGATMVRIGTAIFG 224 (228)
T ss_pred CCCHHHHHHCCCCEEEECHHHHC
T ss_conf 62599999859988997078618
No 426
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=30.08 E-value=33 Score=13.67 Aligned_cols=58 Identities=24% Similarity=0.308 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEC-CCCCCHHHHHHHHHCCCCEEEECC---CCCCCCCCHHH
Q ss_conf 30799999999873997178504-786688999999976997999458---88865100123
Q gi|254781020|r 169 ADLSSKIALLSSAMDVPLLLKEV-GCGLSSMDIELGLKSGIRYFDIAG---RGGTSWSRIES 226 (337)
Q Consensus 169 ~~~~~~i~~l~~~~~~pii~k~v-~~~~~~~~~~~a~~aGad~i~v~~---~gG~~~~~~~~ 226 (337)
....+.++.+|+.++.|+-+-.= ..+........|+++|+|.|.++- .||++-.+.+.
T Consensus 184 ~~a~~LV~alk~~~~lpI~~HtH~t~G~~~a~~l~A~eAGvdivD~a~~~~s~gtsqP~~~~ 245 (580)
T PRK09282 184 YAAYELVSALKKEVDLPVHLHCHATTGLATMTYLKAVEAGVDILDTAISSMSMGTSHPPTET 245 (580)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHH
T ss_conf 99999999999861981699824776479999999998488867001355348878987999
No 427
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=30.01 E-value=34 Score=13.66 Aligned_cols=68 Identities=21% Similarity=0.094 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 98999987765089857625320356652068852430799999999873-99717850478668899999997699799
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
+...+.+.......|.+.+.+..|.. +-.+.++++|+.. ..|+++ +....+.++...+.++|||-.
T Consensus 32 ~~~~al~~~~~~~~dlvilD~~lp~~-----------~G~~l~~~ir~~~~~~piI~--lta~~~~~~~~~al~~Gaddy 98 (223)
T PRK10816 32 DAKEADYYLNEHLPDIAIVDLGLPDE-----------DGLSLIRRWRSNDVSLPILV--LTARESWQDKVEVLSAGADDY 98 (223)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCC-----------CCCCCCCCHHCCCCCCCEEE--EECCCCHHHHHHHHHCCCCEE
T ss_conf 99999999975799899997999898-----------86400120110489876899--944456778999998699886
Q ss_pred EE
Q ss_conf 94
Q gi|254781020|r 212 DI 213 (337)
Q Consensus 212 ~v 213 (337)
.+
T Consensus 99 l~ 100 (223)
T PRK10816 99 VT 100 (223)
T ss_pred EC
T ss_conf 41
No 428
>TIGR00502 nagB glucosamine-6-phosphate isomerase; InterPro: IPR004547 Glucosamine-6-phosphate isomerase (3.5.99.6 from EC) catalyses the conversion of D-glucosamine 6-phosphate and water to D-fructose 6-phosphate in the N-acetylglucosamine utilization pathway. The enzyme was formerly classified as EC 5.3.1.10. This family also includes a closely related pair of proteins from Bacillus subtilis, one of which is uncharacterised but included as a member of the orthologous set.; GO: 0004342 glucosamine-6-phosphate deaminase activity, 0006044 N-acetylglucosamine metabolic process.
Probab=29.69 E-value=16 Score=15.52 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=6.3
Q ss_pred CCCEEEECHHHHH
Q ss_conf 5686850126633
Q gi|254781020|r 56 SFPLLISSMTGGN 68 (337)
Q Consensus 56 ~~Pv~iapmsgg~ 68 (337)
..||++.=-|||+
T Consensus 32 ~~PFVLGLpTGgT 44 (260)
T TIGR00502 32 ARPFVLGLPTGGT 44 (260)
T ss_pred CCCEEEECCCCCC
T ss_conf 3674610688887
No 429
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=29.50 E-value=34 Score=13.61 Aligned_cols=40 Identities=25% Similarity=0.414 Sum_probs=28.0
Q ss_pred HHHHHHEEECCCCCCCCHHHCCCEEEEC-CEEECCCEEEECHH
Q ss_conf 5688630324557899810174629989-89625686850126
Q gi|254781020|r 24 KFFDDWHLIHRALPEISFDEVDPSVEFL-GKKLSFPLLISSMT 65 (337)
Q Consensus 24 ~~fd~~~l~p~~l~~~~~~~vdlst~i~-G~~l~~Pv~iapms 65 (337)
..-++=.|+|+.+..... .|+.-++. |++.|.|.+.|.|+
T Consensus 33 ~~v~Re~F~P~~fk~~AY--~~~al~ig~~qtiS~p~mvA~m~ 73 (228)
T TIGR00080 33 KSVPREEFVPEAFKEAAY--EDAALEIGYGQTISAPHMVAKMT 73 (228)
T ss_pred HCCCCCCCCCHHHHHCCC--CCCCCCCCCCCEECCHHHHHHHH
T ss_conf 418762336716663785--25520025676244078999999
No 430
>PRK08508 biotin synthase; Provisional
Probab=28.91 E-value=35 Score=13.55 Aligned_cols=186 Identities=13% Similarity=0.028 Sum_probs=90.5
Q ss_pred HHHHHHHHHCCE-EECCCCHHHHCCHHHHHHHH----HHHHCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEC
Q ss_conf 999999980990-66052022112866888999----9986640123220275212367998999987765089857625
Q gi|254781020|r 78 NLAIAAEKTKVA-MAVGSQRVMFSDHNAIKSFE----LRQYAPHTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLH 152 (337)
Q Consensus 78 ~lA~aa~~~g~~-~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (337)
.-|+.+.+.|.. |++.+.+....+.+....-+ ++...+...+...++ ..+.+..++. ...|.+..-.+
T Consensus 47 ~~A~~a~~~G~~rf~lv~sg~~~~~~~~e~v~~~v~~Ik~~~~~l~~c~slG------~l~~e~~~~L-keAGvdrY~hN 119 (279)
T PRK08508 47 QEAKMARANGALGFCLVTAGRGLDDKKLEYVAKAAKAVKKEVPGLHLIACNG------MASVEQLKEL-KKAGIFSYNHN 119 (279)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC------CCCHHHHHHH-HHCCCCEECCC
T ss_conf 9999999759976899982368875449999999999863379935761178------5799999999-98397123076
Q ss_pred CCCHHHHHHHC-CCCCHHHHHHHHHHHHHHCCCCEE-EEECCCCCCH----HHHHHHHHCCCCEEEECC---CCCCCCCC
Q ss_conf 32035665206-885243079999999987399717-8504786688----999999976997999458---88865100
Q gi|254781020|r 153 LNPLQEIIQPN-GNTNFADLSSKIALLSSAMDVPLL-LKEVGCGLSS----MDIELGLKSGIRYFDIAG---RGGTSWSR 223 (337)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~~pii-~k~v~~~~~~----~~~~~a~~aGad~i~v~~---~gG~~~~~ 223 (337)
+++........ ....++...+.++++++. +..+- .-.+|-+.+. +++..+.+.++|-|-|.- +.||..
T Consensus 120 lETs~~~y~~I~tThty~dRl~tl~~~k~a-Gl~vCsGgIiGlGEt~edrve~a~~L~eL~~dsVPIN~liPi~GTPL-- 196 (279)
T PRK08508 120 LETSKEFFPKICTTHSWEERFQTCLNAKEA-GLGLCSGGIFGLGESWEDRISMLKSLASLSPHSTPINFFIPNPALPL-- 196 (279)
T ss_pred CCCCHHHHCCCCCCCCHHHHHHHHHHHHHC-CCEEECCCEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCC--
T ss_conf 676768757658998889999999999981-99486785447899989999999999838998751567658999988--
Q ss_pred HHHHCCCCCCCCHHHHHCCCCHHHHHHHHH---HHCCCCEEEECCCCCC-HHH-HHHHHHHCCCEEHHHH
Q ss_conf 123102344323244310634688999998---5228987997298888-899-9999983888523347
Q gi|254781020|r 224 IESHRDLESDIGIVFQDWGIPTPLSLEMAR---PYCNEAQFIASGGLRN-GVD-ILKSIILGASLGGLAS 288 (337)
Q Consensus 224 ~~~~r~~~~~~~~~~~~~gi~~~~al~~~~---~~~~~v~IiadGGIr~-g~D-v~kAlalGAdaV~iGr 288 (337)
....+++.+.|.-++ =+-++..|-..||-.. -.| -..++..||+++++|-
T Consensus 197 ---------------e~~~l~~~e~lr~iAl~RlilP~a~Ir~agGRe~~l~~~q~~~~~aGaN~i~~G~ 251 (279)
T PRK08508 197 ---------------DTPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGERQYEIFEAGANAIVIGD 251 (279)
T ss_pred ---------------CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHCHHHHHHHHHHCCCEEEECC
T ss_conf ---------------8899999999999999999789876562465244556369999984684688866
No 431
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=28.25 E-value=36 Score=13.48 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=42.6
Q ss_pred CHHHH-HHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 88999-99997699799945888865100123102344323244310634688999998522898799729888889999
Q gi|254781020|r 196 SSMDI-ELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDIL 274 (337)
Q Consensus 196 ~~~~~-~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~ 274 (337)
++..+ +.+.+...|.|+++-.=. +..-.+.+..+++....+|||.-+|-.+..++.
T Consensus 29 ~g~~al~~~~~~~~dlvi~D~~mP-----------------------~~~G~el~~~ir~~~~~~pvI~lT~~~~~~~~~ 85 (113)
T cd00156 29 DGEEALALLAEEKPDLILLDIMMP-----------------------GMDGLELLRRIRKRGPDIPIIFLTAHGDDEDAV 85 (113)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCC-----------------------CCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHH
T ss_conf 999999998757999999779998-----------------------987269999999858999599997878999999
Q ss_pred HHHHHCCCEEHHHHHH
Q ss_conf 9998388852334799
Q gi|254781020|r 275 KSIILGASLGGLASPF 290 (337)
Q Consensus 275 kAlalGAdaV~iGr~~ 290 (337)
+++.+||+.... .||
T Consensus 86 ~a~~~Ga~~yl~-KP~ 100 (113)
T cd00156 86 EALKAGADDYLT-KPF 100 (113)
T ss_pred HHHHCCCCEEEE-CCC
T ss_conf 999768978996-989
No 432
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=27.82 E-value=37 Score=13.44 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=28.2
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEH
Q ss_conf 99999852289879972988888999999983888523
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGG 285 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~ 285 (337)
.+..+++..++++|++= -|+-.++.+...+||+.|-
T Consensus 480 iv~~~r~~~P~l~IiaR--ard~~~~~~L~~~Ga~~vv 515 (615)
T PRK03562 480 LTELVKEHFPHLQIIAR--ARDVDHYIRLRQAGVEKPE 515 (615)
T ss_pred HHHHHHHHCCCCEEEEE--ECCHHHHHHHHHCCCCEEE
T ss_conf 99999975899869998--3977889999978999896
No 433
>pfam01212 Beta_elim_lyase Beta-eliminating lyase.
Probab=27.82 E-value=32 Score=13.78 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCCEEEEEC-------CCCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 99999999873997178504-------7866889999999769979994588
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEV-------GCGLSSMDIELGLKSGIRYFDIAGR 216 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v-------~~~~~~~~~~~a~~aGad~i~v~~~ 216 (337)
.+.+..+.+..+.++.+-+. ....++ +.+. .++|.+.++..
T Consensus 151 l~~i~~~a~~~gl~lHmDGARl~nA~~a~~~~~---~e~~-~~~D~v~~~~s 198 (288)
T pfam01212 151 LREIRAIAREHGIPLHLDGARLANAAVALGVIV---KEIT-SYADSVSMSLS 198 (288)
T ss_pred HHHHHHHHHHCCCEEEEHHHHHHHHHHHCCCCH---HHHH-CCCCEEEEEEE
T ss_conf 999999999809937630878988887609998---8985-46888999843
No 434
>TIGR00126 deoC deoxyribose-phosphate aldolase; InterPro: IPR011343 Class I aldolases catalyse carbon-carbon bond formation using a 'Schiff base' mechanism. This entry represents deoxyribose-phosphate aldolase, a widely distributed enzyme, which catalyses the following reversible reaction: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde While the physiological role of this enzyme remains unknown in eukaryotes, in prokaroytes it is thought to function in the catabolism of deoxyribonucleotides , . In all studied structures, the deoxyribose-phophate aldolase subunits adopt the classical eight-bladed TIM barrel fold , , . The oligomerisation state of the enzyme appears to depend on the living temperature of the organism - the Escherichia coli enzyme (P0A6L0 from SWISSPROT) is a homodimer, while the enzymes from the thermophilic microorganisms Thermus thermophilus and Aeropyrum pernix (Q9Y948 from SWISSPROT) are homotetramers. The degree of oligomerisation does not, however, appear to affect catalysis. ; GO: 0004139 deoxyribose-phosphate aldolase activity, 0009264 deoxyribonucleotide catabolic process, 0005737 cytoplasm.
Probab=27.74 E-value=37 Score=13.43 Aligned_cols=99 Identities=25% Similarity=0.252 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHCC---CCEEEE-ECCCCC---CH-HHHHHHHHCCCCEEEECCCCC-CCCCCHHHHCCCCCCCCHHHHHC
Q ss_conf 7999999998739---971785-047866---88-999999976997999458888-65100123102344323244310
Q gi|254781020|r 171 LSSKIALLSSAMD---VPLLLK-EVGCGL---SS-MDIELGLKSGIRYFDIAGRGG-TSWSRIESHRDLESDIGIVFQDW 241 (337)
Q Consensus 171 ~~~~i~~l~~~~~---~pii~k-~v~~~~---~~-~~~~~a~~aGad~i~v~~~gG-~~~~~~~~~r~~~~~~~~~~~~~ 241 (337)
....++.+.+... .++-+- ..+... .. ..+..+.++|++.+.-+..-+ ...+.++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~g~~g~~g~~~~~~-------------- 174 (225)
T TIGR00126 109 VYDDIRAVVEACAGAGVPLKVILETGLLTDEEKVRKACEICLDAGADFVKTSTGFGGLGGATVEDV-------------- 174 (225)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHH--------------
T ss_conf 788888888764204641333344443103677888888776504012100024444345548899--------------
Q ss_pred CCCHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH
Q ss_conf 6346889999985228-----987997298888899999998388852334799
Q gi|254781020|r 242 GIPTPLSLEMARPYCN-----EAQFIASGGLRNGVDILKSIILGASLGGLASPF 290 (337)
Q Consensus 242 gi~~~~al~~~~~~~~-----~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~ 290 (337)
..+ ...+++ .+-+-+.||+++..++.+.+..|++.++-...+
T Consensus 175 -----~~~--~~~~~~~g~~~~~g~~~~gg~~~~~~~~~~~~~g~~~~g~~~~~ 221 (225)
T TIGR00126 175 -----RLL--RKTVGDLGVEKDIGVKASGGVRTAEDALALIEAGASRIGTSWGV 221 (225)
T ss_pred -----HHH--HHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
T ss_conf -----999--98640346300024234675300788999987312330100022
No 435
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=27.73 E-value=37 Score=13.43 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 89999877650898576253203566520688524307999999998739-97178504786688999999976997999
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMD-VPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
...+.+......+|.+.+.+..|.. +-.+..+++|+..+ .|+++ .....+.++...+.++|||-.+
T Consensus 33 g~~a~~~~~~~~~DlvilDi~lP~~-----------~G~~l~~~iR~~~~~~PII~--Lta~~~~~d~i~~l~~GADDYl 99 (226)
T PRK09836 33 GLNGYHLAMTGDYDLIILDIMLPDV-----------NGWDIVRMLRSANKGMPILL--LTALGTIEHRVKGLELGADDYL 99 (226)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC-----------CCCCHHHHHHHHCCCCEEEE--EECCCCHHHHHHHHHCCCCEEE
T ss_conf 9999999851899999988999999-----------87204356776167960999--9445898899999976996886
Q ss_pred EC
Q ss_conf 45
Q gi|254781020|r 213 IA 214 (337)
Q Consensus 213 v~ 214 (337)
.-
T Consensus 100 ~K 101 (226)
T PRK09836 100 VK 101 (226)
T ss_pred EC
T ss_conf 36
No 436
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=27.54 E-value=37 Score=13.41 Aligned_cols=67 Identities=15% Similarity=0.065 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHC-CCCEEEECCCCCC
Q ss_conf 478668899999997699799945888865100123102344323244310634688999998522-8987997298888
Q gi|254781020|r 191 VGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYC-NEAQFIASGGLRN 269 (337)
Q Consensus 191 v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~-~~v~IiadGGIr~ 269 (337)
++..++++ ..++...|+|.+||..|-. . +.-.++..++++- .++|+.+- +
T Consensus 207 VP~~t~~e---eIl~~~pDGiflSNGPGDP----~------------------~~~~~i~~ik~l~~~~iPifGI----C 257 (368)
T COG0505 207 VPADTSAE---EILALNPDGIFLSNGPGDP----A------------------PLDYAIETIKELLGTKIPIFGI----C 257 (368)
T ss_pred ECCCCCHH---HHHHHCCCEEEEECCCCCH----H------------------HHHHHHHHHHHHHCCCCCEEEE----C
T ss_conf 76989999---9985189979974899880----6------------------7789999999986468983788----6
Q ss_pred HHHHHHHHHHCCCEEHH
Q ss_conf 89999999838885233
Q gi|254781020|r 270 GVDILKSIILGASLGGL 286 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~i 286 (337)
=++=+-|||+||+..=+
T Consensus 258 LGHQllalA~Ga~T~Km 274 (368)
T COG0505 258 LGHQLLALALGAKTYKM 274 (368)
T ss_pred HHHHHHHHHCCCCEEEC
T ss_conf 88899998667864320
No 437
>TIGR01064 pyruv_kin pyruvate kinase; InterPro: IPR001697 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis , the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions . The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined , . The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. ; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis.
Probab=27.30 E-value=37 Score=13.38 Aligned_cols=76 Identities=13% Similarity=0.049 Sum_probs=40.3
Q ss_pred HHHHCCCCHHH-------HHHHHHHHCCCCEEEECCCCCC------------HHHHHHHHHHCCCEEHHHH-HHHHHHCC
Q ss_conf 44310634688-------9999985228987997298888------------8999999983888523347-99998414
Q gi|254781020|r 237 VFQDWGIPTPL-------SLEMARPYCNEAQFIASGGLRN------------GVDILKSIILGASLGGLAS-PFLKPAMD 296 (337)
Q Consensus 237 ~~~~~gi~~~~-------al~~~~~~~~~v~IiadGGIr~------------g~Dv~kAlalGAdaV~iGr-~~l~~~~~ 296 (337)
+++|..||..+ .+..|+.. ..|||..-=+-. ..||+-|+.=||||||+-- ...+ .
T Consensus 270 GDLGvEip~eeVp~~QK~~I~~cn~~--gk~VItATQMLdSMi~Np~PTRAEVsDVANAiLDGtDAvMLSGETA~G---~ 344 (513)
T TIGR01064 270 GDLGVEIPAEEVPILQKKLIRKCNRA--GKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKG---K 344 (513)
T ss_pred CCCCEECCHHHHHHHHHHHHHHHHHH--CCEEEEEECCHHHCCCCCCCCCCEEEEEEEEEECCCCEEECCCCCCCC---C
T ss_conf 56702547247999999999999850--992799833245500688894111322355530677613101011347---7
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 668999999999999999999
Q gi|254781020|r 297 SSDAVVAAIESLRKEFIVSMF 317 (337)
Q Consensus 297 G~~gv~~~l~~l~~el~~~m~ 317 (337)
-|=--.+++..+..+-...|.
T Consensus 345 YP~eAV~~M~~Ia~~aE~~~~ 365 (513)
T TIGR01064 345 YPVEAVQMMAKIAKEAEKALA 365 (513)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
T ss_conf 808999999999999986333
No 438
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II; InterPro: IPR011289 Fructose-1,6-bisphosphate (FBP) aldolases reversibly cleave FBP to two triose phosphates, glycerone phophate and D-glyceraldehyde 3-phosphate. They play a key role in both glycolysis (FBP cleavage) and gluconeogenesis (FBP synthesis). These enzymes can be divide into two classes based on their mode of catalysis. Class I FBP aldolases form a Schiff-base intermediate between glycerone phophate and an active site lysine residue, while the class II enzymes use a divalent cation such as Zn(2+) for catalysis . This entry represents class II FBP aldolases found in Gram-positive bacteria, a variety of Gram-negative baceria, and amitochondriate protists. These enzymes are homotetramers where each momomer forms a TIM barrel fold .; GO: 0004332 fructose-bisphosphate aldolase activity, 0008270 zinc ion binding, 0006096 glycolysis, 0030388 fructose 16-bisphosphate metabolic process.
Probab=27.17 E-value=38 Score=13.37 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHH
Q ss_conf 98999987765089857625320356
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQE 158 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
+.++..+.+++++-|.|++.+...|+
T Consensus 165 dp~Ea~~fV~eT~~D~LA~aIGt~HG 190 (339)
T TIGR01859 165 DPDEAEQFVKETGVDYLAAAIGTSHG 190 (339)
T ss_pred CHHHHHHHHHHCCCCEECCCCCCCCC
T ss_conf 87999999976387754010035023
No 439
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=26.99 E-value=34 Score=13.66 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=3.6
Q ss_pred HHHHHCCCCE
Q ss_conf 9999769979
Q gi|254781020|r 201 ELGLKSGIRY 210 (337)
Q Consensus 201 ~~a~~aGad~ 210 (337)
+.|.+||||.
T Consensus 83 ~eA~~AGAD~ 92 (227)
T TIGR01169 83 KEAKAAGADY 92 (227)
T ss_pred HHHHHCCCEE
T ss_conf 8898709804
No 440
>PRK06739 pyruvate kinase; Validated
Probab=26.64 E-value=39 Score=13.31 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC-----CC-CEEEEECCCCCCHHHHHHHHH-
Q ss_conf 98999987765089857625320356652068852430799999999873-----99-717850478668899999997-
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM-----DV-PLLLKEVGCGLSSMDIELGLK- 205 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~-pii~k~v~~~~~~~~~~~a~~- 205 (337)
+.+.+..+. ..+.|.+.+++= ...+++..+|+.. .. .++.|. .+.+..+.+-+
T Consensus 167 D~~dI~~a~-~~~vD~valSFV---------------rsa~DI~~lr~~l~~~~~~~~~IIaKI----E~~~al~NldeI 226 (352)
T PRK06739 167 DKKDIQFLL-EEDVDFIACSFV---------------RKPSHIKEIRDFIQQYKETSPNLIAKI----ETMEAIENFQDI 226 (352)
T ss_pred CHHHHHHHH-HCCCCEEEECCC---------------CCHHHHHHHHHHHHHHCCCCCCEEEEE----CCHHHHHHHHHH
T ss_conf 699999998-759999998577---------------999999999999997268886279986----499899769999
Q ss_pred -CCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCC------------CHHH
Q ss_conf -699799945888865100123102344323244310634688999998522898799729888------------8899
Q gi|254781020|r 206 -SGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLR------------NGVD 272 (337)
Q Consensus 206 -aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr------------~g~D 272 (337)
.-+|+|.|+-.- +.... .......-|-.-+..|... ..|||...=+- --.|
T Consensus 227 i~~sDgIMIARGD------------Lgvei--~~e~vp~~Qk~Ii~~c~~~--gkpvivATqmLeSM~~~p~PTRAEv~D 290 (352)
T PRK06739 227 CKEADGIMIARGD------------LGVEL--PYQFIPLLQKMMIQECNRT--NTYVITATQMLQSMVDHSIPTRAEVTD 290 (352)
T ss_pred HHHCCEEEEECCC------------CCCCC--CHHHHHHHHHHHHHHHHHC--CCCEEEECCCHHHHCCCCCCCHHHHHH
T ss_conf 9855946996586------------44636--9889899999999999982--997899636288763499887699999
Q ss_pred HHHHHHHCCCEEHHH
Q ss_conf 999998388852334
Q gi|254781020|r 273 ILKSIILGASLGGLA 287 (337)
Q Consensus 273 v~kAlalGAdaV~iG 287 (337)
|+-|+.-|||+||+.
T Consensus 291 Vanav~dG~D~vmLs 305 (352)
T PRK06739 291 VFQAVLDGTNAVMLS 305 (352)
T ss_pred HHHHHHHCCCEEEEC
T ss_conf 999998479889972
No 441
>TIGR00044 TIGR00044 conserved hypothetical protein TIGR00044; InterPro: IPR011078 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . Proteins in this entry occur in archaea, bacteria and eukaryotes. They are encoded by genes which are often co-transcribed with proline biosysnthesis genes , although their function in vivo has not yet been demonstrated. The structure of the yeast protein YBL036C (P38197 from SWISSPROT) has been determined to a resolution of 2.0 A . Similar in structure to the N-terminal domains of alanine racemase and ornithine decarboxylase, it forms a TIM barrel fold which begins with a long N-terminal helix, rather than the classical beta strand found at the beginning of most other TIM barrels. Unlike alanine racemase and ornithine decarboxylase, which are two-domain dimeric proteins, the yeast protein is a single domain monomer. A pyridoxal 5'-phosphate cofactor is covalently bound towards the C-terminal end of the barrel, which is the usual active site in TIM-barrel folds. Some racemase activity was observed for this protein and it was suggested by the authors that it may function as a general racemase ..
Probab=26.13 E-value=26 Score=14.33 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=19.7
Q ss_pred HHHHHHHHHHCCCEEHHHHHHHH
Q ss_conf 89999999838885233479999
Q gi|254781020|r 270 GVDILKSIILGASLGGLASPFLK 292 (337)
Q Consensus 270 g~Dv~kAlalGAdaV~iGr~~l~ 292 (337)
..|.=.||++||.-|=|||.+.+
T Consensus 226 SdD~~~AIa~G~t~vRIGT~iFG 248 (250)
T TIGR00044 226 SDDFEEAIAAGATMVRIGTAIFG 248 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 54379999860157778766314
No 442
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=26.11 E-value=39 Score=13.25 Aligned_cols=18 Identities=11% Similarity=-0.023 Sum_probs=12.5
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 999999976997999458
Q gi|254781020|r 198 MDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 198 ~~~~~a~~aGad~i~v~~ 215 (337)
++++.+.++|+..|++-.
T Consensus 160 ~dA~ale~AGa~~ivlE~ 177 (240)
T cd06556 160 ADALAYAPAGADLIVMEC 177 (240)
T ss_pred HHHHHHHHCCCEEEEEEC
T ss_conf 999999847984998745
No 443
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=26.05 E-value=40 Score=13.24 Aligned_cols=24 Identities=17% Similarity=-0.008 Sum_probs=10.8
Q ss_pred EEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 997298888899999998388852
Q gi|254781020|r 261 FIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 261 IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
|+.|.|..+|+=--=||-.||+.|
T Consensus 80 i~lD~GsS~GGFtd~aL~~GAk~V 103 (240)
T TIGR00478 80 IVLDVGSSTGGFTDCALQKGAKEV 103 (240)
T ss_pred EEEEECCCCCHHHHHHHHCCCCEE
T ss_conf 899705673048999987058467
No 444
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=25.97 E-value=40 Score=13.24 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=49.4
Q ss_pred ECCCCCCHHHHHHHHHHCC--CEEHHHHHHHHHHCCCHHHHHHHHHH-----------------HHHHHHHH-----HHH
Q ss_conf 7298888899999998388--85233479999841466899999999-----------------99999999-----998
Q gi|254781020|r 263 ASGGLRNGVDILKSIILGA--SLGGLASPFLKPAMDSSDAVVAAIES-----------------LRKEFIVS-----MFL 318 (337)
Q Consensus 263 adGGIr~g~Dv~kAlalGA--daV~iGr~~l~~~~~G~~gv~~~l~~-----------------l~~el~~~-----m~~ 318 (337)
.+-||.|..|+=+++..|- ..-++|--.-|-+.+|+.|..+++++ |.+||... =.+
T Consensus 201 v~~Giat~ediD~ai~~g~GlRwa~mG~fet~~lagG~~gm~h~~~~fgp~l~~pwt~l~~~p~~~~~l~~~~~~~~~~q 280 (489)
T PRK07531 201 VKDGIATTEEIDDAIRYGFGLRWAQMGLFETYRIAGGEAGMRHFLAQFGPCLKWPWTKLMDVPDLDDALVDLIAGQSDAQ 280 (489)
T ss_pred HHCCCCCHHHHHHHHHHCCCHHHHHHCCHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 87797678988799981875337650717763222656689999997087334852321576200499999986312644
Q ss_pred CCCCCHHHHHCCCC
Q ss_conf 08985789614960
Q gi|254781020|r 319 LGTKRVQELYLNTA 332 (337)
Q Consensus 319 ~G~~~i~el~~~~~ 332 (337)
.|..||+||.+.++
T Consensus 281 ~~~~~i~~l~~~rd 294 (489)
T PRK07531 281 SGGLSIRELERIRD 294 (489)
T ss_pred CCCCCHHHHHHHHH
T ss_conf 15887899998755
No 445
>TIGR01496 DHPS dihydropteroate synthase; InterPro: IPR006390 This domain is present in sequences representing dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. Dihydropteroate synthase (2.5.1.15 from EC) (DHPS) catalyses the condensation of 6-hydroxymethyl-7,8-dihydropteridine pyrophosphate to para-aminobenzoic acid to form 7,8-dihydropteroate. This is the second step in the three-step pathway leading from 6-hydroxymethyl-7,8-dihydropterin to 7,8-dihydrofolate. DHPS is the target of sulphonamides, which are substrate analogues that compete with para-aminobenzoic acid. Bacterial DHPS (gene sul or folP) is a protein of about 275 to 315 amino acid residues that is either chromosomally encoded or found on various antibiotic resistance plasmids. In the lower eukaryote Pneumocystis carinii, DHPS is the C-terminal domain of a multifunctional folate synthesis enzyme (gene fas) .; GO: 0004156 dihydropteroate synthase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=25.92 E-value=40 Score=13.23 Aligned_cols=188 Identities=15% Similarity=0.082 Sum_probs=93.9
Q ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHCCC-----CCHHHHHHHHHHHHHHC---C--CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 999877650898576253203566520688-----52430799999999873---9--9717850478668899999997
Q gi|254781020|r 136 KAHQAVHVLGADGLFLHLNPLQEIIQPNGN-----TNFADLSSKIALLSSAM---D--VPLLLKEVGCGLSSMDIELGLK 205 (337)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~---~--~pii~k~v~~~~~~~~~~~a~~ 205 (337)
.+++..+ .|++-|.+. .+...+..+ .....+...++++++.+ + .||-+ ...-++.++.|.+
T Consensus 28 ~a~~m~~-~GA~IiDiG----GeSTRPG~~~vs~~eE~~Rv~Pv~~~~~~~~~~~dQC~~iSv----DT~~a~Va~~Al~ 98 (268)
T TIGR01496 28 HAERMLE-EGADIIDIG----GESTRPGADRVSPEEELNRVVPVIKALREQYLFSDQCVPISV----DTYRAEVARAALE 98 (268)
T ss_pred HHHHHHH-CCCCEEEEC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE----CCCCHHHHHHHHH
T ss_conf 9999997-399889657----705797698789799999889999999974489998414776----1882899999998
Q ss_pred C-CCCEE-EECCCCCCCC------------------CCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6-99799-9458888651------------------00123102344323244310634688999998522898799729
Q gi|254781020|r 206 S-GIRYF-DIAGRGGTSW------------------SRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASG 265 (337)
Q Consensus 206 a-Gad~i-~v~~~gG~~~------------------~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadG 265 (337)
+ |+|.| .|++.-.... -++.+ .|.....-....+.---....+..+.+.+-+=.||.|=
T Consensus 99 ~~Ga~iiNDv~G~~~dp~m~~vaae~~~~~vlMH~~g~P~~-~q~~~~Y~dv~~e~~~fl~~~~~~~~~~Gv~~~I~LDP 177 (268)
T TIGR01496 99 AFGADIINDVSGGQFDPDMLEVAAEYGVPLVLMHMRGTPET-MQENPRYEDVVEEVLRFLEARAEELLAAGVAERIILDP 177 (268)
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHCCCEEEECCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 67986786041146683589999984898898768763887-66677765668999999999999999758866578717
Q ss_pred CC---C--CHHHHHHHHHHCCCEEH-HHHHHHHH--------HCCC--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHC
Q ss_conf 88---8--88999999983888523-34799998--------4146--68999999999999999999808985789614
Q gi|254781020|r 266 GL---R--NGVDILKSIILGASLGG-LASPFLKP--------AMDS--SDAVVAAIESLRKEFIVSMFLLGTKRVQELYL 329 (337)
Q Consensus 266 GI---r--~g~Dv~kAlalGAdaV~-iGr~~l~~--------~~~G--~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~ 329 (337)
|| + |..|=+.-|.-=..+++ +|=|+|.+ .+.| .+.-++...++...+-..+.=.-.=.+.|.+.
T Consensus 178 G~GF~K~~t~~~Nl~ll~~l~~f~~~lg~PlL~G~SRK~fiG~~~gg~~~~~~R~~Gt~a~~~~a~~~Ga~ivRVHDV~~ 257 (268)
T TIGR01496 178 GIGFGKSDTVEHNLELLKRLEEFKAVLGYPLLVGVSRKSFIGALLGGETPPEERLEGTLAASAYAVQKGADIVRVHDVKE 257 (268)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHH
T ss_conf 75778888876789999868999998577021201104688865167889756426889999999867986798538799
Q ss_pred CCCC
Q ss_conf 9600
Q gi|254781020|r 330 NTAL 333 (337)
Q Consensus 330 ~~~~ 333 (337)
+..+
T Consensus 258 ~~~~ 261 (268)
T TIGR01496 258 TRDA 261 (268)
T ss_pred HHHH
T ss_conf 9999
No 446
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=25.89 E-value=40 Score=13.23 Aligned_cols=82 Identities=13% Similarity=-0.001 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 99999998739971785047866889999999769979994588886510012310234432324431063468899999
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
..++.|.+. +..+.+ ++..++++ ...+...|+|.+||..|-. .. ...++..+
T Consensus 180 nIlr~L~~r-g~~V~V--vP~~~~~~---~i~~~~pDGiflSNGPGDP----~~------------------~~~~i~~v 231 (356)
T PRK12838 180 SILRSLSKR-GCNVTV--LPYNASLE---DIKNLNPDGIVLSNGPGDP----KE------------------LQPYLPTI 231 (356)
T ss_pred HHHHHHHHC-CCEEEE--ECCCCCCC---HHHCCCCCEEEECCCCCCH----HH------------------HHHHHHHH
T ss_conf 999999978-988999--89988754---0232497489943899896----88------------------78899999
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 8522898799729888889999999838885233
Q gi|254781020|r 253 RPYCNEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 253 ~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
+++-.++||.+- +=++=+-+||+||+..=+
T Consensus 232 r~l~~~~PifGI----CLGHQllalA~Gakt~Km 261 (356)
T PRK12838 232 KDLASSYPILGI----CLGHQLIALALGAETYKL 261 (356)
T ss_pred HHHHCCCCEEEE----CHHHHHHHHHHCCEEEEC
T ss_conf 999749888997----488999999709748641
No 447
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=25.84 E-value=40 Score=13.22 Aligned_cols=58 Identities=16% Similarity=0.139 Sum_probs=41.4
Q ss_pred EECCCCCCHHHHHHHHHHCCC--EEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 972988888999999983888--52334799998414668999999999999999999808
Q gi|254781020|r 262 IASGGLRNGVDILKSIILGAS--LGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLG 320 (337)
Q Consensus 262 iadGGIr~g~Dv~kAlalGAd--aV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G 320 (337)
+..-||-+..||=+++..|-- .-.+| ||...-++|+.|+.++++.+-.-++.....+|
T Consensus 204 Lv~eGvas~edID~a~~~G~GlRwa~mG-P~e~~dl~g~~G~~~~~~~~g~~~~~~~~~~~ 263 (308)
T PRK06129 204 LVADGVASVEDIDAVIRDGLGLRWSFMG-PFETIDLNAPGGVADYAQRYGPMYERMAAERG 263 (308)
T ss_pred HHHCCCCCHHHHHHHHHCCCCCCCCCCC-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9985998999999999808999977768-11753168876899999987389999997559
No 448
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=25.04 E-value=41 Score=13.13 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 86688999999976997999458
Q gi|254781020|r 193 CGLSSMDIELGLKSGIRYFDIAG 215 (337)
Q Consensus 193 ~~~~~~~~~~a~~aGad~i~v~~ 215 (337)
.-.+++.+.+|..-|+|+|.|.|
T Consensus 39 Grvn~~fvl~Al~~GaDGV~v~G 61 (132)
T COG1908 39 GRVNPEFVLKALRKGADGVLVAG 61 (132)
T ss_pred CCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 74189999999973898689934
No 449
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=24.45 E-value=42 Score=13.07 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
.....+.......|-+.+.++.|.. .-.+.++++++..+...++-. ....+......++++||++++.
T Consensus 34 ~~~~l~~~~~~~pDvvllDl~lp~~-----------~G~~~~~~ir~~~~~~~viv~-s~~~~~~~~~~a~~~Ga~g~l~ 101 (204)
T PRK09958 34 GGSAVQRVETLKPDIVIIDVDIPGV-----------NGIQVLETLRKRQYSGIIIIV-SAKNDHFYGKHCADAGANGFVS 101 (204)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCC-----------CCHHHHHHHHHHCCCEEEEEE-ECCCCCHHHHHHHHCCCCEEEE
T ss_conf 9999999874397999995899999-----------841678889872798059999-7246521144335268637997
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-HHHH-CCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHH
Q ss_conf 58888651001231023443232443106346889999-9852-289879972988888999999983888523347999
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM-ARPY-CNEAQFIASGGLRNGVDILKSIILGASLGGLASPFL 291 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~-~~~~-~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l 291 (337)
-+......... .+.... +...-+. .+.. .... .+.-++ +.==.+=.+|++.++-|-+.-.|++-+-
T Consensus 102 K~~~~~~l~~a--I~~v~~-------G~~~~~~-~~~~~~~~~~~~~~~~--~~Lt~RE~eVL~ll~~G~snkeIA~~L~ 169 (204)
T PRK09958 102 KKEGMNNIIAA--IEAAKN-------GYCYFPF-SLNRFVGSLTSDQQKL--DSLSKQEISVMRYILDGKDNNDIAEKMF 169 (204)
T ss_pred CCCCHHHHHHH--HHHHHC-------CCCCCCH-HHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 89999999999--999977-------9970889-9999986313563112--5689999999999986999999998978
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9841466899999999999999999980898578961
Q gi|254781020|r 292 KPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 292 ~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
-. -.+.+.-++..|.++|++|-.|+-
T Consensus 170 ----iS-------~~TV~~h~~~i~~KL~v~~r~el~ 195 (204)
T PRK09958 170 ----IS-------NKTVSTYKSRLMEKLECKSLMDLY 195 (204)
T ss_pred ----CC-------HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf ----89-------999999999999984899999999
No 450
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=23.82 E-value=44 Score=12.99 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 99999987399717850478668899999997699799945888
Q gi|254781020|r 174 KIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRG 217 (337)
Q Consensus 174 ~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~g 217 (337)
++=.+|+.+|.-+++-.+|...|.+....|+.||+..| .+-||
T Consensus 198 mMM~iRSMSP~Viv~DEIGr~ED~~Al~eA~naGV~~I-~TaHg 240 (282)
T TIGR02858 198 MMMLIRSMSPDVIVVDEIGREEDVEALLEALNAGVSVI-ATAHG 240 (282)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEE-EEECC
T ss_conf 99999706985799814889533899999861675688-76404
No 451
>PRK12361 hypothetical protein; Provisional
Probab=23.69 E-value=44 Score=12.98 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCCE--EEEECCCCCC-HHHHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 999999998739971--7850478668-8999999976997999458888651
Q gi|254781020|r 172 SSKIALLSSAMDVPL--LLKEVGCGLS-SMDIELGLKSGIRYFDIAGRGGTSW 221 (337)
Q Consensus 172 ~~~i~~l~~~~~~pi--i~k~v~~~~~-~~~~~~a~~aGad~i~v~~~gG~~~ 221 (337)
.+..+.++......+ -++....-.+ .+-++.|++.|+|.|++.|.-||--
T Consensus 258 ~~~~~~i~~~L~~~~~l~v~~t~~~~~a~~LArqAv~~GaDlVVAaGGDGTVn 310 (546)
T PRK12361 258 QQYGEQIIQELKAYFDLTVKLTTPDISANTLAKQARKAGADIIIACGGDGTVT 310 (546)
T ss_pred HHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCHHHH
T ss_conf 88999999973531768999668888999999999974999999988852999
No 452
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=23.34 E-value=45 Score=12.94 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=70.8
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCHHHHHHHH----HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHH
Q ss_conf 9999998739971785047866889999999----769979994588886510012310234432324431063468899
Q gi|254781020|r 174 KIALLSSAMDVPLLLKEVGCGLSSMDIELGL----KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSL 249 (337)
Q Consensus 174 ~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~----~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al 249 (337)
.++++-+ ++.|+++|-- ...+.+.+..++ ..|-.-|++--+|-.+..+.. |- ..-+.++
T Consensus 192 LL~evg~-~~kPVllKrg-~~~ti~ewl~AaEyi~~~Gn~~ViLcERGirtfe~~t--Rn-------------tlDl~ai 254 (335)
T PRK08673 192 LLKEVGK-TNKPVLLKRG-MSATIEEWLMAAEYILAEGNPNVILCERGIRTFETAT--RN-------------TLDLSAV 254 (335)
T ss_pred HHHHHHH-HCCEEEECCC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC--CC-------------CCCHHHH
T ss_conf 9999997-2994897378-8788999987899999769986799934654567666--78-------------7787888
Q ss_pred HHHHHHCCCCEEEECCCCCCHH-----H-HHHHHHHCCCEEHHHHH--HHHHHCCCHHHH-HHHHHHHHHHHHHHHHHCC
Q ss_conf 9998522898799729888889-----9-99999838885233479--999841466899-9999999999999999808
Q gi|254781020|r 250 EMARPYCNEAQFIASGGLRNGV-----D-ILKSIILGASLGGLASP--FLKPAMDSSDAV-VAAIESLRKEFIVSMFLLG 320 (337)
Q Consensus 250 ~~~~~~~~~v~IiadGGIr~g~-----D-v~kAlalGAdaV~iGr~--~l~~~~~G~~gv-~~~l~~l~~el~~~m~~~G 320 (337)
+..++. ...|||.|=-=.+|. . .-+|+|+|||..++=.= .-.+.-+|+..+ -+-|..|.++++......|
T Consensus 255 p~~k~~-thlPVI~DPSH~~G~r~~V~~la~aAiAaGaDGL~iEvHp~P~~AlSDg~Q~l~p~~f~~l~~~l~~i~~~~~ 333 (335)
T PRK08673 255 PVLKKL-THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALG 333 (335)
T ss_pred HHHHHC-CCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 999718-8988898882203633228999999998099889999568812146874236899999999999999999858
Q ss_pred C
Q ss_conf 9
Q gi|254781020|r 321 T 321 (337)
Q Consensus 321 ~ 321 (337)
-
T Consensus 334 r 334 (335)
T PRK08673 334 R 334 (335)
T ss_pred C
T ss_conf 8
No 453
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase; InterPro: IPR000053 Two highly similar activities are represented in this group: thymidine phosphorylase (TP, gene deoA, 2.4.2.4 from EC) and pyrimidine-nucleoside phosphorylase (PyNP, gene pdp, 2.4.2.2 from EC). Both are dimeric enzymes that function in the salvage pathway to catalyse the reversible phosphorolysis of pyrimidine nucleosides to the free base and sugar moieties. In the case of thymidine phosphorylase, thymidine (and to a lesser extent, 2'-deoxyuridine) is lysed to produce thymine (or uracil) and 2'-deoxyribose-1-phosphate. Pyrimidine-nucleoside phosphorylase performs the analogous reaction on thymidine (to produce the same products) and uridine (to produce uracil and ribose-1-phosphate). PyNP is typically the only pyrimidine nucleoside phosphorylase encoded by Gram positive bacteria, while eukaryotes and proteobacteria encode two: TP, and the unrelated uridine phosphorylase. In humans, TP was originally characterised as platelet-derived endothelial cell growth factor and gliostatin . Structurally, the enzymes are homodimers, each composed of a rigid all alpha-helix lobe and a mixed alpha-helix/beta-sheet lobe, which are connected by a flexible hinge , . Prior to substrate binding, the lobes are separated by a large cleft. A functional active site and subsequent catalysis occurs upon closing of the cleft. The active site, composed of a phosphate binding site and a (deoxy)ribonucleotide binding site within the cleft region, is highly conserved between the two enzymes of this group. Active site residues (Escherichia coli DeoA numbering) include the phosphate binding Lys84 and Ser86 (close to a glycine-rich loop), Ser113, and Thr123, and the pyrimidine nucleoside-binding Arg171, Ser186, and Lys190. Sequence comparison between the active site residues for both enzymes reveals only one difference , which has been proposed to partially mediate substrate specificity. In TP, position 111 is a methionine, while the analogous position in PyNP is lysine. It should be noted that the uncharacterised archaeal members of this family differ in a number of respects from either of the characterised activities. The residue at position 108 is lysine, indicating the activity might be PyNP-like (though the determinants of substrate specificity have not been fully elucidated). Position 171 is glutamate (negative charge side chain) rather than arginine (positive charge side chain). In addition, a large loop that may "lock in" the substrates within the active site is much smaller than in the characterised members. It is not clear what effect these and other differences have on activity and specificity.; GO: 0006206 pyrimidine base metabolic process.
Probab=23.31 E-value=41 Score=13.18 Aligned_cols=10 Identities=30% Similarity=0.345 Sum_probs=4.6
Q ss_pred HHHHHHCCCE
Q ss_conf 9999838885
Q gi|254781020|r 274 LKSIILGASL 283 (337)
Q Consensus 274 ~kAlalGAda 283 (337)
=|=||.|||.
T Consensus 185 SKKlA~G~d~ 194 (425)
T TIGR02644 185 SKKLAAGADA 194 (425)
T ss_pred HHHHHHCCCC
T ss_conf 8999830432
No 454
>PRK10651 transcriptional regulator NarL; Provisional
Probab=23.30 E-value=45 Score=12.93 Aligned_cols=163 Identities=13% Similarity=-0.000 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
..+..........|-+.+.++.|.. + -.+.++++++..+...++... ...+.+....+.++||++++.
T Consensus 41 ~~ea~~~~~~~~pDlvllDl~lp~~------~-----G~~~~~~l~~~~~~~~iivlt-~~~~~~~~~~al~~Ga~gyl~ 108 (216)
T PRK10651 41 GEQGIELAESLDPDLILLDLNMPGM------N-----GLETLDKLREKSLSGRIVVFS-VSNHEEDVVTALKRGADGYLL 108 (216)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCC------C-----CCCCCCCCCCCCCCCCEEEEE-CCCCHHHHHHHHHCCCCEEEE
T ss_conf 9999999870799999995999998------8-----876423233457887467630-554188999999669878983
Q ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHCCCC-HHHHHHHHHHHCCC---CEEEECCCCCCHHHHHHHHHHCCCEEHHHHH
Q ss_conf 5888865100123102344323244310634-68899999852289---8799729888889999999838885233479
Q gi|254781020|r 214 AGRGGTSWSRIESHRDLESDIGIVFQDWGIP-TPLSLEMARPYCNE---AQFIASGGLRNGVDILKSIILGASLGGLASP 289 (337)
Q Consensus 214 ~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~-~~~al~~~~~~~~~---v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~ 289 (337)
-........ ...+.....- .-++ ...... ....... .+--...==.+=.+|++.++-|-+.-.|++-
T Consensus 109 K~~~~~~L~--~ai~~v~~g~------~~~~~~~~~~l-~~~~~~~~~~~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 179 (216)
T PRK10651 109 KDMEPEDLL--KALHQAAAGE------MVLSEALTPVL-AASLRANRATTERDVNQLTPRERDILKLIAQGLSNKMIARR 179 (216)
T ss_pred CCCCHHHHH--HHHHHHHCCC------CCCCHHHHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 789999999--9999998599------71698899999-98752266654444234898999999999859999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 999841466899999999999999999980898578961
Q gi|254781020|r 290 FLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKRVQELY 328 (337)
Q Consensus 290 ~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~ 328 (337)
+- -. -.+.+.-++..|.++|++|-.|+-
T Consensus 180 L~----iS-------~~TV~~h~~~i~~KLgv~nr~ea~ 207 (216)
T PRK10651 180 LD----IT-------ESTVKVHVKHMLKKMKLKSRVEAA 207 (216)
T ss_pred HC----CC-------HHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 69----78-------999999999999984899999999
No 455
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.15 E-value=45 Score=12.91 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=46.2
Q ss_pred CCCHHHHHHHH-HCC----CCEEEEC--CCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHH--------CCC
Q ss_conf 66889999999-769----9799945--88886510012310234432324431063468899999852--------289
Q gi|254781020|r 194 GLSSMDIELGL-KSG----IRYFDIA--GRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPY--------CNE 258 (337)
Q Consensus 194 ~~~~~~~~~a~-~aG----ad~i~v~--~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~--------~~~ 258 (337)
.++|+++...+ +.| +|.+-++ |..|.- ..+...-..+.|.++++. ..+
T Consensus 180 yTdPeea~~fv~~tG~~~~vD~LAvaiGt~HG~Y-----------------k~g~~~L~~~~L~~i~~~v~~~~~~~~~~ 242 (340)
T cd00453 180 YTQPEDVDYAYTELSKISPRFTIAASFGNVHGVY-----------------KKGNVVLTPTILRDSQEYVSKKHNLPHNS 242 (340)
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC-----------------CCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 5898999999998668888615776404455566-----------------89998579899999999999973888888
Q ss_pred CEEEECCCCCCH-HHHHHHHHHCCCEEHHHHHH
Q ss_conf 879972988888-99999998388852334799
Q gi|254781020|r 259 AQFIASGGLRNG-VDILKSIILGASLGGLASPF 290 (337)
Q Consensus 259 v~IiadGGIr~g-~Dv~kAlalGAdaV~iGr~~ 290 (337)
+|+..=||=-.+ .++-||+.+|-.=|-|.|=+
T Consensus 243 vpLVlHGgSGvp~e~i~~ai~~GV~KiNIdTdl 275 (340)
T cd00453 243 LNFVFHGGSGSTAQEIKDSVSYGVVKMNIDTDT 275 (340)
T ss_pred CCEEEECCCCCCHHHHHHHHHCCCEECCCCHHH
T ss_conf 745741788999999999998296532356088
No 456
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=23.05 E-value=45 Score=12.90 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHCCCCEE
Q ss_conf 9899998776508985762532035665206885243079999999987399-717850478668899999997699799
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDV-PLLLKEVGCGLSSMDIELGLKSGIRYF 211 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-pii~k~v~~~~~~~~~~~a~~aGad~i 211 (337)
+..+..........|.+.+.+..|.. .-.+.+++++..-.. ++|+ +....+.+.+..|++.||+-.
T Consensus 38 ~~~eA~~~l~~~~pDLvLLDi~LPd~-----------~Glell~~lr~~~~~~~VI~--iTA~~d~~~~~~Al~~Ga~DY 104 (225)
T PRK10046 38 NLAQARMMIERFKPGLILLDNYLPDG-----------RGINLLHELVQAHYPGDVVF--TTAASDMETVSEAVRCGVFDY 104 (225)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCC-----------CHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHCCCCCC
T ss_conf 99999999973599999982898999-----------79999999996487998899--968999999999997499831
Q ss_pred EEC
Q ss_conf 945
Q gi|254781020|r 212 DIA 214 (337)
Q Consensus 212 ~v~ 214 (337)
.+-
T Consensus 105 LvK 107 (225)
T PRK10046 105 LIK 107 (225)
T ss_pred EEC
T ss_conf 028
No 457
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=23.04 E-value=45 Score=12.90 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 46689999999999999
Q gi|254781020|r 296 DSSDAVVAAIESLRKEF 312 (337)
Q Consensus 296 ~G~~gv~~~l~~l~~el 312 (337)
...+.+.++++.|++|+
T Consensus 237 d~~e~v~~Lv~~Lkee~ 253 (254)
T PRK12342 237 DSPEAIAELAEHLKKAL 253 (254)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 98999999999998865
No 458
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=22.93 E-value=45 Score=12.89 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHC---CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 98999987765089857625320356652068852430799999999873---997178504786688999999976997
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAM---DVPLLLKEVGCGLSSMDIELGLKSGIR 209 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~pii~k~v~~~~~~~~~~~a~~aGad 209 (337)
+.+.+.+.......|.+.+.+..|.. + -.+..+++|... ..|+++ ...-.+.++...+.++|||
T Consensus 34 ~g~~a~~~l~~~~~DliilDi~lP~~------d-----G~~~~~~ir~~~~~~~~PII~--lta~~~~~d~v~gl~~GAD 100 (229)
T PRK10161 34 DYDSAVNQLNEPWPDLILLDWMLPGG------S-----GIQFIKHLKRESMTRDIPVVM--LTARGEEEDRVRGLETGAD 100 (229)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCCCC------C-----CHHHHHHHHHCCCCCCCCEEE--EECCCCHHHHHHHHHCCCC
T ss_conf 99999999852899899997899887------6-----335878877502468975899--9556665779999876987
Q ss_pred EEEEC
Q ss_conf 99945
Q gi|254781020|r 210 YFDIA 214 (337)
Q Consensus 210 ~i~v~ 214 (337)
-.++-
T Consensus 101 DYl~K 105 (229)
T PRK10161 101 DYITK 105 (229)
T ss_pred EEEEC
T ss_conf 65208
No 459
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=22.72 E-value=46 Score=12.86 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=24.5
Q ss_pred CCCCEEEECCCCCCHHHHHH-HHHHCCCEEHHHHH
Q ss_conf 28987997298888899999-99838885233479
Q gi|254781020|r 256 CNEAQFIASGGLRNGVDILK-SIILGASLGGLASP 289 (337)
Q Consensus 256 ~~~v~IiadGGIr~g~Dv~k-AlalGAdaV~iGr~ 289 (337)
..++||-..|-+-+--..+. .+.||-+..-+--.
T Consensus 244 ~~g~~vsiCGE~a~dp~~~~~L~~lGi~~lSv~p~ 278 (292)
T pfam02896 244 RKGKWVGICGEMAGDPSAVPLLLGLGLDEFSMSPT 278 (292)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 87999998088767989999999879997998877
No 460
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=22.41 E-value=47 Score=12.83 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999999987399717850478668899999997699799945888
Q gi|254781020|r 172 SSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRG 217 (337)
Q Consensus 172 ~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~g 217 (337)
.+.+..+....+.|+++-..-.+. ..-..++++|||.++.|+|=
T Consensus 176 ~~~i~~iah~~~ip~lvdeA~~~~--~~P~~a~~~GaD~~v~S~HK 219 (386)
T PRK09331 176 AKKIAKVAHQYGIPLLLNGAYTVG--RMPVDGKELGADFIVGSGHK 219 (386)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCC--CCCCCHHHCCCCEEEEECCC
T ss_conf 899999998749818981443357--78974666399889863454
No 461
>PRK05826 pyruvate kinase; Provisional
Probab=22.36 E-value=47 Score=12.82 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCCEEEECCCC------------CCHHHHHHHHHHCCCEEHHH
Q ss_conf 99999852289879972988------------88899999998388852334
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGL------------RNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGI------------r~g~Dv~kAlalGAdaV~iG 287 (337)
-+..|... ..|||...=+ .--.||+.|+--|||+||+.
T Consensus 264 Ii~~c~~~--gkpvivATqmLeSM~~~p~PTRAEv~DVanAv~dG~DavmLS 313 (461)
T PRK05826 264 IIRKAREA--GKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLS 313 (461)
T ss_pred HHHHHHHC--CCEEEEECCCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99988754--998999765689760799997277878999998368789974
No 462
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=22.31 E-value=47 Score=12.81 Aligned_cols=68 Identities=16% Similarity=0.045 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEE
Q ss_conf 89999877650898576253203566520688524307999999998739971785047866889999999769979994
Q gi|254781020|r 134 VQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDI 213 (337)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v 213 (337)
...+.+.......|.+.+.+..|.. +-.+..+++|+....|+++ ...-.+.++...+.++|||-.+.
T Consensus 33 g~~al~~~~~~~~DlvilDi~lP~~-----------dG~~l~~~iR~~~~~pII~--lta~~~~~d~i~~l~~GADDYl~ 99 (223)
T PRK11517 33 GRDGLYLALKDDYALIILDIMLPGM-----------DGWQILQTLRTAKQTPVIC--LTARDSVDDRVRGLDSGANDYLV 99 (223)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCC-----------CHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHHHCCCCEEEE
T ss_conf 9999999852899999984999873-----------6899999998568864899--95655657899999839877620
Q ss_pred C
Q ss_conf 5
Q gi|254781020|r 214 A 214 (337)
Q Consensus 214 ~ 214 (337)
-
T Consensus 100 K 100 (223)
T PRK11517 100 K 100 (223)
T ss_pred C
T ss_conf 8
No 463
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=21.98 E-value=47 Score=12.77 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHHCC--CEEEECCCCH
Q ss_conf 998999987765089--8576253203
Q gi|254781020|r 132 FGVQKAHQAVHVLGA--DGLFLHLNPL 156 (337)
Q Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~~~~~ 156 (337)
.+.+.+.++.+.... +...+.+||.
T Consensus 175 tGKElvAr~IH~~S~R~~~PFVavNca 201 (464)
T COG2204 175 TGKELVARAIHQASPRAKGPFIAVNCA 201 (464)
T ss_pred CCHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 758999999986074458992563346
No 464
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=21.88 E-value=48 Score=12.76 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHH-HHHHCCCHHHH----HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999985228987997298888899999998388852334799-99841466899----999999999999999980898
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPF-LKPAMDSSDAV----VAAIESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~-l~~~~~G~~gv----~~~l~~l~~el~~~m~~~G~~ 322 (337)
.++..++.. .++|-.+.==..-.=.+-|+||||..+= +-| +-....|++.. -+-+..|.+.++..-..+|..
T Consensus 197 ~i~~l~~~F-n~~vGlSDHT~g~~a~l~AvALGA~viE--KHFtldk~~~GpD~afSldP~efk~mv~~ir~~~~alG~~ 273 (347)
T COG2089 197 AIPKLAEAF-NAIVGLSDHTLGILAPLAAVALGASVIE--KHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGDG 273 (347)
T ss_pred HHHHHHHHH-CCCCCCCCCCCCHHHHHHHHHHCCCCEE--EEEEECCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 799999996-8761566676531678999872100100--0032147778997111138899999999999999983778
No 465
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=21.87 E-value=48 Score=12.76 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHCCCEEHHH
Q ss_conf 7997298888899999998388852334
Q gi|254781020|r 260 QFIASGGLRNGVDILKSIILGASLGGLA 287 (337)
Q Consensus 260 ~IiadGGIr~g~Dv~kAlalGAdaV~iG 287 (337)
....|||+...--+-.|+..||+-+.+=
T Consensus 152 ~~yvDGGv~~~~Pi~~a~~~G~~~ivvV 179 (266)
T cd07208 152 EPYVDGGLSDSIPVDKAIEDGADKIVVI 179 (266)
T ss_pred EEEEECCCCCCCCHHHHHHCCCCEEEEE
T ss_conf 8987067285635899998799989999
No 466
>PRK06354 pyruvate kinase; Provisional
Probab=21.81 E-value=48 Score=12.75 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=25.4
Q ss_pred HHHHHHHHHCCCCEEEECCC-----CC-------CHHHHHHHHHHCCCEEHHH
Q ss_conf 89999985228987997298-----88-------8899999998388852334
Q gi|254781020|r 247 LSLEMARPYCNEAQFIASGG-----LR-------NGVDILKSIILGASLGGLA 287 (337)
Q Consensus 247 ~al~~~~~~~~~v~IiadGG-----Ir-------~g~Dv~kAlalGAdaV~iG 287 (337)
.-+..|+.. ..|||..-= +. --.||+.|+.=|+|+||+.
T Consensus 267 ~II~~c~~~--gKPVI~ATQMLeSMi~np~PTRAEvsDVANAV~DGtDAVMLS 317 (589)
T PRK06354 267 RLIKKANSL--GIPVITATQMLDSMQRNPRPTRAEVSDVANAILDGTDAVMLS 317 (589)
T ss_pred HHHHHHHHC--CCCEEEEECCHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 999999973--997899815578753799987154677989997078789974
No 467
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=21.76 E-value=48 Score=12.75 Aligned_cols=33 Identities=12% Similarity=-0.038 Sum_probs=15.1
Q ss_pred HCCCCEEEECCCCCCHHHHHHH-HHHCCCEEHHH
Q ss_conf 2289879972988888999999-98388852334
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKS-IILGASLGGLA 287 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kA-lalGAdaV~iG 287 (337)
.+...+|-.+|.+..-..+.-. +.||=|-.-+.
T Consensus 494 h~~gkwvgmCGElAgD~~a~plLlGlGldElSms 527 (574)
T COG1080 494 HRHGKWVGMCGELAGDPAATPLLLGLGLDELSMS 527 (574)
T ss_pred HHCCCEEEECHHHCCCHHHHHHHHHCCCCHHCCC
T ss_conf 9739846643301158236799986383323068
No 468
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=21.70 E-value=48 Score=12.74 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=12.4
Q ss_pred HHEEECCCCCCCCHHHCCCEEEECCEEECCCEEE
Q ss_conf 6303245578998101746299898962568685
Q gi|254781020|r 28 DWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLI 61 (337)
Q Consensus 28 ~~~l~p~~l~~~~~~~vdlst~i~G~~l~~Pv~i 61 (337)
|+.|.--.||+. +-.++-.++-...-..||++
T Consensus 49 dlvl~Di~mP~~--~Gl~ll~~lr~~~~~~pvIv 80 (469)
T PRK10923 49 DVLLSDIRMPGM--DGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred CEEEECCCCCCC--CHHHHHHHHHHCCCCCCEEE
T ss_conf 999878999998--99999999984298997899
No 469
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=21.20 E-value=49 Score=12.68 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99998776508985762532035665206885243079999999987399717850478668899999997699799945
Q gi|254781020|r 135 QKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 (337)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~ 214 (337)
+.+.........|.+.+.+..|... -.+..+++|+..+.|+++ +....+.++...+.++|||-.+.-
T Consensus 35 ~~al~~~~~~~~DlviLDi~lP~~d-----------G~~l~~~iR~~~~~pII~--lta~~~~~d~i~~l~~GADDYl~K 101 (225)
T PRK10529 35 QRGLLEAATRKPDLIILDLGLPDGD-----------GIEFIRDLRQWSAIPVIV--LSARSEESDKIAALDAGADDYLSK 101 (225)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCC-----------CCCCEEEEECCCCCCEEE--EECCCCHHHHHHHHHCCCCEEEEC
T ss_conf 9999986117998999807888888-----------763310001279987899--954689899999997698765407
No 470
>CHL00148 orf27 Ycf27; Reviewed
Probab=20.73 E-value=50 Score=12.62 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+...+.........|.+.+.+..|.. +. .+..+++|+....|+++ .....+.++...+.++|||-.+
T Consensus 38 ~g~~a~~~~~~~~~DlviLDi~LP~~------dG-----~~l~~~iR~~~~~PII~--LTa~~~~~d~v~gl~~GADDYi 104 (240)
T CHL00148 38 DGEEALKLFHQEQPDLVILDVMMPKL------DG-----YGVCQEIRKESDVPIIM--LTALGDVSDRITGLELGADDYV 104 (240)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCC------CC-----CEEEECCCCCCCCCEEE--EECCCCHHHHHHHHHCCCCEEE
T ss_conf 99999999974799999997999988------86-----63054140379954899--8167898999999976997895
Q ss_pred EC
Q ss_conf 45
Q gi|254781020|r 213 IA 214 (337)
Q Consensus 213 v~ 214 (337)
+-
T Consensus 105 ~K 106 (240)
T CHL00148 105 VK 106 (240)
T ss_pred EC
T ss_conf 27
No 471
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=20.63 E-value=51 Score=12.61 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=43.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 987997298888899999998388852334799998414668999999999999999999808985
Q gi|254781020|r 258 EAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFLLGTKR 323 (337)
Q Consensus 258 ~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~ 323 (337)
+.|.++-|||.- .-+-..++.|.+.|.+-|++-.+ .-++-+.+.++.+..|-+.....--+..
T Consensus 366 ~~PtVAIGGI~~-~r~~~V~~tGV~siAVV~AIT~A--~dp~~av~~f~~~~~~~~~~~~~e~~~~ 428 (439)
T PRK12290 366 GFPTVAIGGIDQ-SNAEQVWQCGVSSLAVVRAITLA--EDPKLVIEFFDQVMAENQLLLRSESCEA 428 (439)
T ss_pred CCCEEEECCCCH-HHHHHHHHHCCCCEEEEEHHHCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 998388977168-88899998199817988633328--9989999999987242420134133211
No 472
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=20.57 E-value=51 Score=12.60 Aligned_cols=82 Identities=12% Similarity=0.053 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf 99999998739971785047866889999999769979994588886510012310234432324431063468899999
Q gi|254781020|r 173 SKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA 252 (337)
Q Consensus 173 ~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~ 252 (337)
..++.|.+. +..+.+ ++..++.+ ...+...|+|.+||..|-. .. ...++..+
T Consensus 184 nIlr~L~~r-g~~v~V--vP~~~~~~---~I~~~~pDGIflSNGPGDP----~~------------------~~~~i~~i 235 (355)
T PRK12564 184 NILRELAER-GCRVTV--VPATTTAE---EILALNPDGVFLSNGPGDP----AA------------------LDYAIEMI 235 (355)
T ss_pred HHHHHHHHC-CCEEEE--ECCCCCHH---HHHCCCCCEEEECCCCCCH----HH------------------HHHHHHHH
T ss_conf 899999987-986999--68978765---7641488889967999996----88------------------79999999
Q ss_pred HHHC-CCCEEEECCCCCCHHHHHHHHHHCCCEEHH
Q ss_conf 8522-898799729888889999999838885233
Q gi|254781020|r 253 RPYC-NEAQFIASGGLRNGVDILKSIILGASLGGL 286 (337)
Q Consensus 253 ~~~~-~~v~IiadGGIr~g~Dv~kAlalGAdaV~i 286 (337)
+++- .++||.+- +=++=+-|||+||+..-+
T Consensus 236 k~li~~~~PifGI----CLGHQllalA~Ga~t~Km 266 (355)
T PRK12564 236 KELLEGKIPIFGI----CLGHQLLALALGAKTYKM 266 (355)
T ss_pred HHHHCCCCCEEEE----CHHHHHHHHHCCCEECCC
T ss_conf 9985269878998----887999999719844205
No 473
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.56 E-value=51 Score=12.60 Aligned_cols=39 Identities=15% Similarity=0.054 Sum_probs=31.0
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHH
Q ss_conf 99999852289879972988888999999983888523347
Q gi|254781020|r 248 SLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLAS 288 (337)
Q Consensus 248 al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr 288 (337)
.+..+++..++++|++ --++-.++.+...+|||.|-.-+
T Consensus 498 iv~~~r~~~p~~~Iia--Ra~~~~~~~~L~~aGA~~VV~~~ 536 (558)
T PRK10669 498 IVASAREKNPDIEIIA--RAHYDDEVAYITERGANQVVMGE 536 (558)
T ss_pred HHHHHHHHCCCCEEEE--EECCHHHHHHHHHCCCCEEECCH
T ss_conf 9999998786986999--97989999999977999898937
No 474
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=20.48 E-value=51 Score=12.59 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE-ECC
Q ss_conf 0799999999873997178504786688999999976997999-458
Q gi|254781020|r 170 DLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD-IAG 215 (337)
Q Consensus 170 ~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~-v~~ 215 (337)
.+...++.+++.++.|+-+ ....++.++.|.++|+|.|- |++
T Consensus 63 Rl~pvl~~i~~~~~v~iSI----DT~~~~Va~~al~~G~~iINDVsg 105 (258)
T cd00423 63 RVIPVLRALAGEPDVPISV----DTFNAEVAEAALKAGADIINDVSG 105 (258)
T ss_pred HHHHHHHHHHCCCCCEEEE----ECCCHHHHHHHHHCCCCEEECCHH
T ss_conf 8500568874279960999----798889999999859986824003
No 475
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=20.23 E-value=52 Score=12.56 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999987765089857625320356652068852430799999999873997178504786688999999976997999
Q gi|254781020|r 133 GVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFD 212 (337)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~ 212 (337)
+.+.+.........|.+.+.+..|... -.+..+++|+....|+++ +....+.++...+.++|||..+
T Consensus 34 ~~~~a~~~l~~~~~DlvilDi~lp~~~-----------G~el~~~iR~~~~~piI~--lta~~~~~~~i~al~~GaddYl 100 (224)
T PRK10766 34 SGAGMREIMQNQHVDLILLDINLPGED-----------GLMLTRELRSRSTVGIIL--VTGRTDSIDRIVGLEMGADDYV 100 (224)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCC-----------CCCHHHHHHHCCCCCEEE--ECCCCCHHHHHHHHHCCCHHHH
T ss_conf 999999999608999999889999887-----------661376763047855686--3355898999999984941451
Q ss_pred E
Q ss_conf 4
Q gi|254781020|r 213 I 213 (337)
Q Consensus 213 v 213 (337)
.
T Consensus 101 ~ 101 (224)
T PRK10766 101 T 101 (224)
T ss_pred C
T ss_conf 3
Done!