HHsearch alignment for GI: 254781020 and conserved domain: pfam00290
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=96.90 E-value=0.027 Score=31.91 Aligned_cols=161 Identities=14% Similarity=0.176 Sum_probs=94.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 52123679989999877650898576253203566520688524307999999998739971785047866889999999
Q gi|254781020|r 125 AVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGL 204 (337)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~ 204 (337)
T Consensus 94 Y~N~i~~~G~e~F~~~~~~~GvdGvIi-pDLP~eE------------~~~~~~~~~~~~l~~I~l-vsPtt~~~Ri~~i~ 159 (258)
T pfam00290 94 YYNPVLNYGIERFYAQAAEAGVDGLII-PDLPPEE------------ADPLREAAEKHGIDLIFL-VAPTTSDERLKTIS 159 (258)
T ss_pred ECHHHHHCCHHHHHHHHHHCCCCEEEC-CCCCHHH------------HHHHHHHHHHCCCCEEEE-ECCCCCHHHHHHHH
T ss_conf 208898729999999999759977870-7999889------------999999998458435888-45888199999999
Q ss_pred HCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEE
Q ss_conf 76997999458888651001231023443232443106346889999985228987997298888899999998388852
Q gi|254781020|r 205 KSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLG 284 (337)
Q Consensus 205 ~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV 284 (337)
T Consensus 160 ~~s~gFiY~vs~~GvTG~~~~---------------~~~~~~~~i~~ik~~-t~~Pv~vGFGIs~~e~v~~-~~~~aDGv 222 (258)
T pfam00290 160 EAASGFVYLVSRAGVTGARNA---------------FNAQLDELVERLKKY-TNVPVAVGFGISTPEHVKK-IAAGADGV 222 (258)
T ss_pred HHCCCEEEEEECCCCCCCCCC---------------CCHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHH-HHCCCCEE
T ss_conf 608980899853445676555---------------638899999999860-6998489945799999999-98159999
Q ss_pred HHHHHHHHHHCCCHH---HHHHHHHHHHHHHHHHH
Q ss_conf 334799998414668---99999999999999999
Q gi|254781020|r 285 GLASPFLKPAMDSSD---AVVAAIESLRKEFIVSM 316 (337)
Q Consensus 285 ~iGr~~l~~~~~G~~---gv~~~l~~l~~el~~~m 316 (337)
T Consensus 223 IVGSaiv~~i~~~~~~~~~~~~~v~~fv~~lk~a~ 257 (258)
T pfam00290 223 IVGSAIVDIIEENLDDPEQMLAKLEEFVGKLKAAT 257 (258)
T ss_pred EECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98499999999704068899999999999999963