HHsearch alignment for GI: 254781020 and conserved domain: pfam01180
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=99.91 E-value=2.7e-22 Score=149.61 Aligned_cols=252 Identities=15% Similarity=0.059 Sum_probs=143.8
Q ss_pred CEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEE-ECCCCHHH----------------------HCCH
Q ss_conf 629989896256868501266334300025699999999809906-60520221----------------------1286
Q gi|254781020|r 46 PSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAM-AVGSQRVM----------------------FSDH 102 (337)
Q Consensus 46 lst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~-~~g~~~~~----------------------~~~~ 102 (337)
T Consensus 2 L~t~~~Gl~~~nPi~lAsG---~~~---~~-~~~~~~~~~~g~G~vv~ktit~~~~~gnp~Pr~~~~~~~~~n~~G~~n~ 74 (290)
T pfam01180 2 LAVKIPGLKFKNPIGLASG---FDK---FG-EEALKWLALGKFGAIEIKSVTPEPQPGNPTPRVFRLPEGVLNAMGLNNP 74 (290)
T ss_pred EEEEECCEECCCCCEECCC---CCC---CC-HHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEECCCHHHHHCCCCCC
T ss_conf 5699899887998788867---688---86-9999998718967799483485626699987799837014421565773
Q ss_pred HHHHHHH-HHH---HCC-CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 6888999-998---664-01232202752123679989999877650898576253203566520688524307999999
Q gi|254781020|r 103 NAIKSFE-LRQ---YAP-HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIAL 177 (337)
Q Consensus 103 ~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 177 (337)
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~vi~si~g--~~-~~d~~~~~~~~~~-~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~ 150 (290)
T pfam01180 75 GLDAVLEELLKRRKEYPRPLGIILSKAG--ST-VEDYVEVARKIGP-FADYLELNVSCPNTPGLRALQTDPELAAILLKV 150 (290)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCC--CC-HHHHHHHHHHHHH-HCCEEEEEEECCCCCCCHHHCCCHHHHHHHHHH
T ss_conf 0799999999877753888537862466--99-9999999999974-358899998536887613340429899999999
Q ss_pred HHHHCCCCEEEEECCCCCCHHHHHHH-HHCCCCEEE---ECCCC-CCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHH-
Q ss_conf 99873997178504786688999999-976997999---45888-8651001231023443232443106346889999-
Q gi|254781020|r 178 LSSAMDVPLLLKEVGCGLSSMDIELG-LKSGIRYFD---IAGRG-GTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEM- 251 (337)
Q Consensus 178 l~~~~~~pii~k~v~~~~~~~~~~~a-~~aGad~i~---v~~~g-G~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~- 251 (337)
T Consensus 151 v~~~~~~Pv~vKlsp~~~~~~~~~~a~~~~~a~gv~gi~~~nt~~~~~~~d~~~~~~~~~~~~GGlSG~~i~~~-al~~v 229 (290)
T pfam01180 151 VKEVSKVPVLVKLAPDLTDIVIIDIADVAAGEDGLTGINATNTTVRGMRIDLKTESPILANGTGGLSGPAIKPI-ALKVI 229 (290)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHH
T ss_conf 87504787389838987746899999997183776899965873465555555666312567888576067899-99999
Q ss_pred --HH-HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf --98-522898799729888889999999838885233479999841466899999999999999999
Q gi|254781020|r 252 --AR-PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSM 316 (337)
Q Consensus 252 --~~-~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~~m 316 (337)
T Consensus 230 ~~~~~~~~~~ipIig~GGI~~~~da~e~i~aGA~~VQv~Tal~~---~Gp~----~i~~i~~~L~~~m 290 (290)
T pfam01180 230 RELYQRVGPEIPIIGVGGIFTGEDALEKILAGASAVQIGTALIF---GGPF----IFPKIIDELPELL 290 (290)
T ss_pred HHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHH---CCCH----HHHHHHHHHHHHC
T ss_conf 99999708997499988949999999999839979998589984---1917----9999999999759