HHsearch alignment for GI: 254781020 and conserved domain: pfam01645
>pfam01645 Glu_synthase Conserved region in glutamate synthase. This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.
Probab=99.97 E-value=1.5e-31 Score=204.04 Aligned_cols=262 Identities=18% Similarity=0.156 Sum_probs=175.2
Q ss_pred CCHHHCCCEEEECCEEECCCEEEECHHHHHHHHCHHHHHHHHHHHHHHCCEEECCCCHHHHCCHHHHH----------HH
Q ss_conf 98101746299898962568685012663343000256999999998099066052022112866888----------99
Q gi|254781020|r 39 ISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIK----------SF 108 (337)
Q Consensus 39 ~~~~~vdlst~i~G~~l~~Pv~iapmsgg~~~~~~~~~~~lA~aa~~~g~~~~~g~~~~~~~~~~~~~----------~~ 108 (337)
T Consensus 52 i~i~eVEp~~-----~i~~~f~~~~MS~GalS--~~a~~ala~~a~~~G~~~nTGEGG~~p~~~~~~~~~~I~Qi~sgrF 124 (367)
T pfam01645 52 IPIEEVEPAL-----EIKTRFCTGAMSYGALS--EEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAADGAIKQVASGRF 124 (367)
T ss_pred CCHHHCCCHH-----HHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHCCEEECCCCCCCHHHHCCCCCCCEEECCCCCC
T ss_conf 7676559989-----97632033556565527--9999999999998376443588888989962368861785136767
Q ss_pred HHHHHCCCHHHHHCCCCCCC----------CCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCC---HHHHHHHH
Q ss_conf 99986640123220275212----------367998999987765089857625320356652068852---43079999
Q gi|254781020|r 109 ELRQYAPHTVLISNLGAVQL----------NYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTN---FADLSSKI 175 (337)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i 175 (337)
T Consensus 125 Gv~~~~l~~~~~iEIKi~QGAKPG~GG~Lpg~KVt-~eIA~----------~R~~~~G~d~iSP~~h~di~s~edL~~~I 193 (367)
T pfam01645 125 GVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVS-PEIAR----------IRGSPPGVGLISPPPHHDIYSIEDLAQLI 193 (367)
T ss_pred CCCHHHHCCCCEEEEEEECCCCCCCCCCCCHHHCC-HHHHH----------HCCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78976832565479998258788978837735448-99996----------80899998767863347889999999999
Q ss_pred HHHHHHC-CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999873-997178504786688999999976997999458888651001231023443232443106346889999985
Q gi|254781020|r 176 ALLSSAM-DVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMARP 254 (337)
Q Consensus 176 ~~l~~~~-~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~~ 254 (337)
T Consensus 194 ~~Lr~~~~~~PVgvKl~~~~~~~~ia~~~aka~~D~I~IdG~eGGTGAaP~~~~d~~GlP----~~~~L~~~~~~L~~~g 269 (367)
T pfam01645 194 YDLKEINPKAPISVKLVSGHGVGTIAAGVAKAGADIILIDGHDGGTGASPKTSIKHAGLP----WELALAEVHQTLVENG 269 (367)
T ss_pred HHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHCCCH----HHHHHHHHHHHHHHHC
T ss_conf 999841789945999814776899999875367888997178986775548899744246----9999999999998706
Q ss_pred HCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH------------------------------CCCHHHHHHH
Q ss_conf 2289879972988888999999983888523347999984------------------------------1466899999
Q gi|254781020|r 255 YCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPA------------------------------MDSSDAVVAA 304 (337)
Q Consensus 255 ~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~~------------------------------~~G~~gv~~~ 304 (337)
T Consensus 270 lR~~V~liasGgl~t~~Dv~ka~aLGAD~v~~gt~~m~AlGCi~~~~Ch~~~CP~GIaTqdp~l~~~l~~~~~~~rv~nf 349 (367)
T pfam01645 270 LRDRVSLIADGGLRTGADVAKAAALGADAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGAPERVVNY 349 (367)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHH
T ss_conf 75764999769978889999999856535423479999864898665269989984225798887326966479999999
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 999999999999980898
Q gi|254781020|r 305 IESLRKEFIVSMFLLGTK 322 (337)
Q Consensus 305 l~~l~~el~~~m~~~G~~ 322 (337)
T Consensus 350 ~~~~~~e~~~i~~a~G~~ 367 (367)
T pfam01645 350 FRFLAEEVRELLAALGFN 367 (367)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 999999999999985889