HHsearch alignment for GI: 254781020 and conserved domain: pfam03060

>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.

Probab=99.72  E-value=3.7e-16  Score=113.50  Aligned_cols=99  Identities=20%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             99999987399717850478668899999997699799945888865100123102344323244310634688999998
Q gi|254781020|r  174 KIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMAR  253 (337)
Q Consensus       174 ~i~~l~~~~~~pii~k~v~~~~~~~~~~~a~~aGad~i~v~~~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~~  253 (337)
T Consensus       129 ~v~~~~-~~G~~v----~~~v~s~~~A~~a~~~G~D~iV~qG~eAGGH------~G~---------~~~~~~~~L~~~v~  188 (330)
T pfam03060       129 VIERLK-ESGTKV----IPTVSSAKEARKAEAAGADAVVAQGPEAGGH------RGT---------EVGTGTFLLVPTVV  188 (330)
T ss_pred             HHHHHH-HCCCEE----EEECCCHHHHHHHHHCCCCEEEEECCCCCCC------CCC---------CCCCCHHHHHHHHH
T ss_conf             999999-879989----9981899999999981999899966766777------888---------77730777789999


Q ss_pred             HHCCCCEEEECCCCCCHHHHHHHHHHCCCEEHHHHHHHHH
Q ss_conf             5228987997298888899999998388852334799998
Q gi|254781020|r  254 PYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKP  293 (337)
Q Consensus       254 ~~~~~v~IiadGGIr~g~Dv~kAlalGAdaV~iGr~~l~~  293 (337)
T Consensus       189 ~~-~~iPvIaAGGI~dg~~iaaalalGA~gV~mGTrFlat  227 (330)
T pfam03060       189 DA-VDIPVIAAGGIADGRGIAAALALGAEGVQIGTRFLAT  227 (330)
T ss_pred             HH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEECCEEEEC
T ss_conf             87-1697785266289999999996799899971300115