HHsearch alignment for GI: 254781020 and conserved domain: pfam09370

>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.02  E-value=0.38  Score=25.12  Aligned_cols=172  Identities=13%  Similarity=0.067  Sum_probs=91.4

Q ss_pred             CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHH--------HHHHHHHHHHHHCCCCEE
Q ss_conf             012322027521236799899998776508985762532035665206885243--------079999999987399717
Q gi|254781020|r  116 HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFA--------DLSSKIALLSSAMDVPLL  187 (337)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~l~~~~~~pii  187 (337)
T Consensus        81 ~tPViaGv~~t--DP~~~~~~~L~~l~~~GfsGV~N-f--PTvgli---dG~fR~~LEetGmgy~~EVEmIr~A~~~dl~  152 (268)
T pfam09370        81 HTPVLAGVCGT--DPFRDMDRFLDELKEMGFAGVQN-F--PTVGLI---DGEFRQNLEETGMGYDLEVEMIRLAHEKGLL  152 (268)
T ss_pred             CCCEEEECCCC--CCCCCHHHHHHHHHHHCCCCEEE-C--CCEEEE---CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf             88758761588--97452999999999719774443-8--822033---5188877888088679999999999977983


Q ss_pred             EEECCCCCCHHHHHHHHHCCCCEEEECC---CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH-HHHCCCCEEEE
Q ss_conf             8504786688999999976997999458---8886510012310234432324431063468899999-85228987997
Q gi|254781020|r  188 LKEVGCGLSSMDIELGLKSGIRYFDIAG---RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA-RPYCNEAQFIA  263 (337)
Q Consensus       188 ~k~v~~~~~~~~~~~a~~aGad~i~v~~---~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~-~~~~~~v~Iia  263 (337)
T Consensus       153 T--~~yvf~~e~a~~Ma~AGaDiIv~H~GlT~gG~iG~~~-----------a~sl~~a~~~~~~i~~aa~~v~~diIvLc  219 (268)
T pfam09370       153 T--TPYVFNVEEARAMAEAGADIIVAHMGLTTGGTIGADT-----------ALSLDDCVELINAIARAARSVNPDVIVLC  219 (268)
T ss_pred             C--CCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             3--3132689999999974998999767767776746777-----------67899999999999999998599869995


Q ss_pred             CCC-CCCHHHHHHHHHHCC--CEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             298-888899999998388--852334799998414668999999999999999
Q gi|254781020|r  264 SGG-LRNGVDILKSIILGA--SLGGLASPFLKPAMDSSDAVVAAIESLRKEFIV  314 (337)
Q Consensus       264 dGG-Ir~g~Dv~kAlalGA--daV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~  314 (337)
T Consensus       220 hGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~ERl------PvE~ai~~~~~~FK~  267 (268)
T pfam09370       220 HGGPIATPEDAQYVLDRTPGCHGFYGASSMERL------PTERAITEQTSAFKS  267 (268)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHH------HHHHHHHHHHHHHHC
T ss_conf             178889989999999739777667633036664------689999999998624