HHsearch alignment for GI: 254781020 and conserved domain: pfam09370
>pfam09370 TIM-br_sig_trns TIM-barrel signal transduction protein. This domain is likely to have a TIM barrel fold related to IGPS. Although this family of proteins are functionally uncharacterized this domain is found as an N-terminal domain of sigma 54 -dependent transcriptional activators (enhancer-binding proteins) suggesting a potential role in signal recognition/receiving and signal transduction.
Probab=94.02 E-value=0.38 Score=25.12 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=91.4
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCHH--------HHHHHHHHHHHHCCCCEE
Q ss_conf 012322027521236799899998776508985762532035665206885243--------079999999987399717
Q gi|254781020|r 116 HTVLISNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFA--------DLSSKIALLSSAMDVPLL 187 (337)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~l~~~~~~pii 187 (337)
T Consensus 81 ~tPViaGv~~t--DP~~~~~~~L~~l~~~GfsGV~N-f--PTvgli---dG~fR~~LEetGmgy~~EVEmIr~A~~~dl~ 152 (268)
T pfam09370 81 HTPVLAGVCGT--DPFRDMDRFLDELKEMGFAGVQN-F--PTVGLI---DGEFRQNLEETGMGYDLEVEMIRLAHEKGLL 152 (268)
T ss_pred CCCEEEECCCC--CCCCCHHHHHHHHHHHCCCCEEE-C--CCEEEE---CCHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
T ss_conf 88758761588--97452999999999719774443-8--822033---5188877888088679999999999977983
Q ss_pred EEECCCCCCHHHHHHHHHCCCCEEEECC---CCCCCCCCHHHHCCCCCCCCHHHHHCCCCHHHHHHHH-HHHCCCCEEEE
Q ss_conf 8504786688999999976997999458---8886510012310234432324431063468899999-85228987997
Q gi|254781020|r 188 LKEVGCGLSSMDIELGLKSGIRYFDIAG---RGGTSWSRIESHRDLESDIGIVFQDWGIPTPLSLEMA-RPYCNEAQFIA 263 (337)
Q Consensus 188 ~k~v~~~~~~~~~~~a~~aGad~i~v~~---~gG~~~~~~~~~r~~~~~~~~~~~~~gi~~~~al~~~-~~~~~~v~Iia 263 (337)
T Consensus 153 T--~~yvf~~e~a~~Ma~AGaDiIv~H~GlT~gG~iG~~~-----------a~sl~~a~~~~~~i~~aa~~v~~diIvLc 219 (268)
T pfam09370 153 T--TPYVFNVEEARAMAEAGADIIVAHMGLTTGGTIGADT-----------ALSLDDCVELINAIARAARSVNPDVIVLC 219 (268)
T ss_pred C--CCEECCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-----------CCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 3--3132689999999974998999767767776746777-----------67899999999999999998599869995
Q ss_pred CCC-CCCHHHHHHHHHHCC--CEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 298-888899999998388--852334799998414668999999999999999
Q gi|254781020|r 264 SGG-LRNGVDILKSIILGA--SLGGLASPFLKPAMDSSDAVVAAIESLRKEFIV 314 (337)
Q Consensus 264 dGG-Ir~g~Dv~kAlalGA--daV~iGr~~l~~~~~G~~gv~~~l~~l~~el~~ 314 (337)
T Consensus 220 hGGpI~~P~Da~~vl~~t~~~~Gf~GaSS~ERl------PvE~ai~~~~~~FK~ 267 (268)
T pfam09370 220 HGGPIATPEDAQYVLDRTPGCHGFYGASSMERL------PTERAITEQTSAFKS 267 (268)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCEEECCCHHHHH------HHHHHHHHHHHHHHC
T ss_conf 178889989999999739777667633036664------689999999998624