BLAST/PSIBLAST alignment of GI: 254781020 and GI: 78486059 at iteration 1

>gi|78486059|ref|YP_391984.1| isopentenyl pyrophosphate isomerase [Thiomicrospira crunogena XCL-2] Length = 343
>gi|91207080|sp|Q31EW3|IDI2_THICR RecName: Full=Isopentenyl-diphosphate delta-isomerase; Short=IPP isomerase; AltName: Full=Isopentenyl pyrophosphate isomerase Length = 343
>gi|78364345|gb|ABB42310.1| Isopentenyl-diphosphate delta-isomerase, FMN-dependent [Thiomicrospira crunogena XCL-2] Length = 343

 Score =  396 bits (1017), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/336 (55%), Positives = 249/336 (74%), Gaps = 3/336 (0%)

Query: 2   VNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLI 61
           +  RK DHI+ + +D  I+R +  FD   L HR LPE  + +VD    FL   LSFPLLI
Sbjct: 6   ITQRKQDHIDWLLQDEKIERQQAGFDQIQLTHRGLPECDYAQVDSGTTFLQHSLSFPLLI 65

Query: 62  SSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLIS 121
           SSMTGG +  +  IN NLA AAE  +VAMAVGSQR M  D  A KSF+LRQ+AP   LI+
Sbjct: 66  SSMTGGASNALNTINENLARAAEHCQVAMAVGSQRTMILDRKAEKSFQLRQFAPTVPLIA 125

Query: 122 NLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSSA 181
           N+GA+QLNY FG  +A + V VL AD L+LHLNPLQE+IQP G+TNFA L+ KIA L + 
Sbjct: 126 NMGAIQLNYGFGYDEAQRMVEVLEADALYLHLNPLQEVIQPEGDTNFAKLAEKIAHLKNH 185

Query: 182 MDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLES---DIGIVF 238
           + VP++LKEVGCGLS  DI+LGL +GI +FD+AGRGGTSWSRIE+HR  +S   ++G +F
Sbjct: 186 LSVPIILKEVGCGLSEKDIQLGLDAGIEWFDLAGRGGTSWSRIEAHRTEDSQQAELGKMF 245

Query: 239 QDWGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSS 298
           QDWG+ TP +L+ ARP+ ++AQFIASGG+RNG+D++KS+I+GA + G+A+P LKPAM S+
Sbjct: 246 QDWGLTTPQALKQARPFQSQAQFIASGGIRNGIDMVKSVIMGAQICGVAAPLLKPAMAST 305

Query: 299 DAVVAAIESLRKEFIVSMFLLGTKRVQELYLNTALI 334
           +A +  IE L++EF  + FLLG  ++ +L+LN +LI
Sbjct: 306 NATIGTIEQLQQEFRTAQFLLGMPKMADLFLNDSLI 341