BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter asiaticus str. psy62] (337 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLL 60 MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLL Sbjct: 1 MVNDRKIDHINIVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLL 60 Query: 61 ISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLI 120 ISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLI Sbjct: 61 ISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQRVMFSDHNAIKSFELRQYAPHTVLI 120 Query: 121 SNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSS 180 SNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSS Sbjct: 121 SNLGAVQLNYDFGVQKAHQAVHVLGADGLFLHLNPLQEIIQPNGNTNFADLSSKIALLSS 180 Query: 181 AMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240 AMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD Sbjct: 181 AMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIAGRGGTSWSRIESHRDLESDIGIVFQD 240 Query: 241 WGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDA 300 WGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDA Sbjct: 241 WGIPTPLSLEMARPYCNEAQFIASGGLRNGVDILKSIILGASLGGLASPFLKPAMDSSDA 300 Query: 301 VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ 337 VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ Sbjct: 301 VVAAIESLRKEFIVSMFLLGTKRVQELYLNTALIRHQ 337 >gi|254781018|ref|YP_003065431.1| GHMP kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 32.0 bits (71), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%) Query: 12 IVCKDPGIDRNKKFFDDWHLIHRALPEISFDEVDPSVEFLGKKLSFPLLISSMTGGNNKM 71 I P I +N+ +W I+ +PE S E V F+ + S + S N+M Sbjct: 187 IYINPPQIIKNETLVGEWWAINTGMPESSTGEC---VSFVEQHFSQSSIWSEFNAVTNEM 243 Query: 72 IERINRNLAIAAEKTKVAMAV 92 +E I + AEKT ++ V Sbjct: 244 MENIQKK---DAEKTYKSVRV 261 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 24.3 bits (51), Expect = 2.9, Method: Compositional matrix adjust. Identities = 13/43 (30%), Positives = 25/43 (58%) Query: 276 SIILGASLGGLASPFLKPAMDSSDAVVAAIESLRKEFIVSMFL 318 S++L +G + L+ + ++D V+ + LRKE +VS F+ Sbjct: 246 SMLLPEVVGFEVTGSLQEGVTATDLVLTITQMLRKEGVVSKFV 288 >gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 22.7 bits (47), Expect = 8.6, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Query: 169 ADLSSKIALLSSAMDVPLLLKEVGCGLSSMDIELGLKSGIRYFDIA 214 D +K+ L +D+P+ KE G S +DI K+GI +D A Sbjct: 2 TDKFAKLHLGHEEIDLPI--KEGSLGSSVLDISFLHKNGIFTYDPA 45 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 22.7 bits (47), Expect = 10.0, Method: Compositional matrix adjust. Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%) Query: 43 EVDPSVEF-LGKKLSFPLLISSMTGGNNKMIERINRNLAIAAEKTKVAMAVGSQR 96 EV P + K++ FP+L+ + GG R + IA + ++ A+ R Sbjct: 136 EVYPHTAMPIAKEIGFPVLVKASAGGG-------GRGMRIAYSENDLSEAIDQAR 183 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.138 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,785 Number of Sequences: 1233 Number of extensions: 8894 Number of successful extensions: 33 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 7 length of query: 337 length of database: 328,796 effective HSP length: 74 effective length of query: 263 effective length of database: 237,554 effective search space: 62476702 effective search space used: 62476702 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)