Query gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 163
No_of_seqs 116 out of 671
Neff 6.7
Searched_HMMs 23785
Date Tue May 31 23:37:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781022.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wxu_A Phospholipase C; cytoly 33.1 21 0.00088 14.7 2.8 22 103-124 116-137 (370)
2 1ah7_A Phospholipase C; phosph 30.1 24 0.001 14.4 2.6 23 103-125 108-130 (245)
3 1olp_A Alpha-toxin; zinc phosp 27.5 26 0.0011 14.2 2.0 22 103-124 116-137 (370)
4 1cii_A Colicin IA; bacteriocin 13.5 56 0.0023 12.4 1.3 19 100-118 575-593 (602)
5 2w58_A DNAI, primosome compone 6.3 1.1E+02 0.0046 10.8 1.5 14 2-15 65-78 (202)
6 3ec2_A DNA replication protein 6.1 1.1E+02 0.0047 10.8 1.5 14 2-15 49-62 (180)
7 3k25_A SLR1438 protein; struct 5.2 1.3E+02 0.0054 10.4 0.4 13 122-134 62-74 (289)
8 1y2k_A DPDE3, PDE43, CAMP-spec 4.9 1.3E+02 0.0056 10.3 1.6 17 35-51 126-142 (349)
9 2our_A CAMP and CAMP-inhibited 4.9 1.3E+02 0.0057 10.3 2.2 23 35-79 108-130 (331)
10 1f0j_A PDE4B, phosphodiesteras 4.7 1.4E+02 0.0059 10.2 1.6 17 35-51 113-129 (377)
No 1
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, metal-binding, Ca and membrane binding, gangrene determinant, zinc, toxin, calcium; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=33.13 E-value=21 Score=14.66 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999985133888
Q gi|254781022|r 103 QDALIIGYVSHLVADVLTPTGI 124 (163)
Q Consensus 103 ~~~~~lG~~sHll~D~lT~~Gv 124 (163)
-..+.+|..+|.+.|+..++=+
T Consensus 116 ~A~f~LG~a~Hy~~D~~~P~Ha 137 (370)
T 2wxu_A 116 QATFYLGEAMHYFGDIDTPYHP 137 (370)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999998886306887555
No 2
>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A
Probab=30.06 E-value=24 Score=14.37 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999999851338880
Q gi|254781022|r 103 QDALIIGYVSHLVADVLTPTGIP 125 (163)
Q Consensus 103 ~~~~~lG~~sHll~D~lT~~Gv~ 125 (163)
...+.+|+++|+++|+-.+.=+-
T Consensus 108 ~a~~~L~~~~H~vgDihQPlH~~ 130 (245)
T 1ah7_A 108 QAFFYLGLSLHYLGDVNQPMHAA 130 (245)
T ss_dssp HHHHHHHHHHHHHHHHTSTTTTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99999999999981278987767
No 3
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=27.52 E-value=26 Score=14.19 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999999999985133888
Q gi|254781022|r 103 QDALIIGYVSHLVADVLTPTGI 124 (163)
Q Consensus 103 ~~~~~lG~~sHll~D~lT~~Gv 124 (163)
-..+.+|..+|.+.|+.+++=+
T Consensus 116 ~A~f~LG~a~Hy~~D~~~P~Ha 137 (370)
T 1olp_A 116 KAAWYLGQGMHYFGDLNTPYHA 137 (370)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999998887887427987655
No 4
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=13.47 E-value=56 Score=12.38 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999985
Q gi|254781022|r 100 QGLQDALIIGYVSHLVADV 118 (163)
Q Consensus 100 ~~~~~~~~lG~~sHll~D~ 118 (163)
+.++.++..|+++-++-|-
T Consensus 575 ~~~~~~~~~~~~~~~~~~~ 593 (602)
T 1cii_A 575 GIIGYGLLMAVTGALIDES 593 (602)
T ss_dssp HHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHCCHH
T ss_conf 9999999999999970658
No 5
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=6.29 E-value=1.1e+02 Score=10.80 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 75228999999999
Q gi|254781022|r 2 TYEGHCIFALASVI 15 (163)
Q Consensus 2 ~~~tH~~~g~a~~~ 15 (163)
+||||++.+++-.+
T Consensus 65 tGKT~La~ai~~~l 78 (202)
T 2w58_A 65 VGKTYLLAAIANEL 78 (202)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 97899999999997
No 6
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=6.13 E-value=1.1e+02 Score=10.75 Aligned_cols=14 Identities=21% Similarity=0.097 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 75228999999999
Q gi|254781022|r 2 TYEGHCIFALASVI 15 (163)
Q Consensus 2 ~~~tH~~~g~a~~~ 15 (163)
+||||++.+++-.+
T Consensus 49 tGKT~La~ai~~~l 62 (180)
T 3ec2_A 49 VGKTHLAVATLKAI 62 (180)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
T ss_conf 98899999999998
No 7
>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP}
Probab=5.19 E-value=1.3e+02 Score=10.43 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=8.9
Q ss_pred CCCCCCCCCCCCE
Q ss_conf 8880314178646
Q gi|254781022|r 122 TGIPLLWPYHWRF 134 (163)
Q Consensus 122 ~Gv~ll~Pfs~r~ 134 (163)
.|+|+++|+-+|+
T Consensus 62 gG~p~lfP~~nRi 74 (289)
T 3k25_A 62 GGIPILFPICGNL 74 (289)
T ss_dssp BSBCEEBSCSSCC
T ss_pred CCCEEEEEEECCC
T ss_conf 8986999870886
No 8
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 2fm0_A* 2fm5_A* 1oyn_A* 1ptw_A* 1q9m_A* 1zkn_A* 2qyn_A* 2pw3_A* ...
Probab=4.90 E-value=1.3e+02 Score=10.32 Aligned_cols=17 Identities=35% Similarity=0.815 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998336004553
Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163)
..+.+++|+.-|+|||.
T Consensus 126 ~~alliAAl~HDv~HpG 142 (349)
T 1y2k_A 126 ILAAIFASAIHDVDHPG 142 (349)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99999999982269999
No 9
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* 3lxg_A*
Probab=4.88 E-value=1.3e+02 Score=10.31 Aligned_cols=23 Identities=52% Similarity=0.967 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCCCCHHHHHH
Q ss_conf 999999983360045536788885010168997416544147799
Q gi|254781022|r 35 VLGALLSCLLPDIDHPRSFISKRFKTLSLLTSCISSHRGFTHSIL 79 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~s~~~~~~~~~~~~~~~~~~HRg~THSl~ 79 (163)
..+.+++|+.-|+| |||.|-+..
T Consensus 108 ~~alliAal~HDv~----------------------H~G~~N~fl 130 (331)
T 2our_A 108 RKGLLIACLCHDLD----------------------HRGFSNSYL 130 (331)
T ss_dssp HHHHHHHHHHTTTT----------------------CCSCCHHHH
T ss_pred HHHHHHHHHHHHCC----------------------CCCCCCHHH
T ss_conf 99999999984369----------------------999998888
No 10
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=4.69 E-value=1.4e+02 Score=10.24 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCCH
Q ss_conf 99999998336004553
Q gi|254781022|r 35 VLGALLSCLLPDIDHPR 51 (163)
Q Consensus 35 l~~~~~gsllPDiD~~~ 51 (163)
..+.+++|+.-|+|||.
T Consensus 113 ~~alliAal~HD~~HpG 129 (377)
T 1f0j_A 113 ILAAIFAAAIHDVDHPG 129 (377)
T ss_dssp HHHHHHHHHHTTTTCCS
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999982048998
Done!