RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781022|ref|YP_003065435.1| hypothetical protein
CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)



>gnl|CDD|146772 pfam04307, DUF457, Predicted membrane-bound metal-dependent
           hydrolase (DUF457).  Family of predicted membrane-bound
           metal-dependent hydrolases, based on a sequence from
           Clostridium acetobutylicum.
          Length = 81

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 44/90 (48%), Positives = 53/90 (58%), Gaps = 9/90 (10%)

Query: 40  LSCLLPDIDHPRSFISKRFKTLSLLTSCISSHRGFTHSILAVILYKWLIHHFFPSELISY 99
           L  LLPD+DHP SFI         LT  I  HRGFTHS+L  +L   L+   F       
Sbjct: 1   LGALLPDLDHPLSFIDA-------LTLSIIGHRGFTHSLLFALLLALLLLLLFLRTGRRN 53

Query: 100 QGLQDALIIGYVSHLVADVLTPTGIPLLWP 129
            GL  AL++GY+SHL+ D LTP G+PLLWP
Sbjct: 54  LGL--ALLLGYLSHLLLDALTPYGVPLLWP 81


>gnl|CDD|32171 COG1988, COG1988, Predicted membrane-bound metal-dependent
           hydrolases [General function prediction only].
          Length = 190

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 1   MTYEGHCIFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT 60
           MT + H +  LA   LA K+    S        ++   LL+ L+ DI    S +  +   
Sbjct: 1   MTGKTHVLLGLALGALAVKLALALSP-----VVILPDLLLASLILDILPDLSVLGLKLPD 55

Query: 61  LSLLTSCISSHRGFTHSILAVILYKWLIHHFFPSELIS--YQGLQDALIIGYVSHLVADV 118
           +SL       HRGFTHS+L   +   L+        +   ++ L   L +G  SH++ D 
Sbjct: 56  ISLYIRLG--HRGFTHSLLFAAVALLLLGLLLFLFFLPLIFKDLLLGLFLGVFSHILLDA 113

Query: 119 LTPTGIPLLWPYHWRFCLPILHPNSPIGEIFFCVLFLIYAIIS 161
           LT  G+PLLWP+       +L   +     F   L  I   + 
Sbjct: 114 LTTAGVPLLWPFSDTRWSALLLIITFDPVAFLSHLIAILFTVL 156


>gnl|CDD|38893 KOG3689, KOG3689, KOG3689, Cyclic nucleotide phosphodiesterase
           [Signal transduction mechanisms].
          Length = 707

 Score = 27.7 bits (61), Expect = 1.4
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 24  SSFTDAEWGTVVLGALLSCLLPDIDHP---RSFISKRFKTLSLLTSCISS----HRGFTH 76
           + FTD E    +L  L++ L  D+DH     S++ K    L+ L +  S     H     
Sbjct: 454 NKFTDLE----ILALLIAALCHDLDHRGTNNSYLIKSNSPLAQLYNDSSVLENHHFAQAF 509

Query: 77  SILA 80
            +L 
Sbjct: 510 KLLQ 513


>gnl|CDD|39609 KOG4408, KOG4408, KOG4408, Putative Mg2+ and Co2+ transporter
          CorD [Inorganic ion transport and metabolism].
          Length = 386

 Score = 26.5 bits (58), Expect = 3.4
 Identities = 9/50 (18%), Positives = 15/50 (30%)

Query: 22 FLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKTLSLLTSCISSH 71
                        L  +LS LL       +++S+R K L       +  
Sbjct: 2  ETLPLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRP 51


>gnl|CDD|38013 KOG2802, KOG2802, KOG2802, Membrane protein HUEL (cation efflux
           superfamily) [General function prediction only].
          Length = 503

 Score = 26.5 bits (58), Expect = 3.8
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 12  ASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKTLSLLTSC 67
           +  + A+ ++ L+         + LG   S   PD  HP  + + R+ + SL++  
Sbjct: 232 SHSMFAEAIHSLADT--CNQLLLALGISKSVQTPDPLHPYGYSNMRYVS-SLISGV 284


>gnl|CDD|37057 KOG1846, KOG1846, KOG1846, Uncharacterized conserved protein,
           contains Sec7 domain [Intracellular trafficking,
           secretion, and vesicular transport].
          Length = 1777

 Score = 25.6 bits (55), Expect = 7.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 88  IHHFFPSELISYQGLQDALIIGYVSHLVADVLTPTGIPLLWPYHWRFCLPILHPN 142
           IH   P E+ S Q  + AL +  +   +  +L     PLL   H  FC P++  +
Sbjct: 891 IHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHKARPLL---HQMFCWPLVAAH 942


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.331    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,170,818
Number of extensions: 114449
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 344
Number of HSP's successfully gapped: 29
Length of query: 163
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 77
Effective length of database: 4,405,363
Effective search space: 339212951
Effective search space used: 339212951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.3 bits)