RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62] (163 letters) >gnl|CDD|183256 PRK11648, PRK11648, inner membrane protein; Provisional. Length = 195 Score = 166 bits (422), Expect = 3e-42 Identities = 72/161 (44%), Positives = 99/161 (61%), Gaps = 3/161 (1%) Query: 1 MTYEGHCIFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT 60 MT EGH +F++A I AKK +W ++ GA+L+CLLPDIDHP+SF+ +R K Sbjct: 1 MTAEGHLLFSIACAIFAKKAELTPVLAQGDWWHIIPGAILTCLLPDIDHPKSFLGQRLKW 60 Query: 61 LSLLTSCISSHRGFTHSILAVILYKWLIHHFFPSE-LISYQGLQDALIIGYVSHLVADVL 119 +S + HRGFTHS+LAV L + P I LQ A+++GY+SH++AD+L Sbjct: 61 ISKPIARAFGHRGFTHSLLAVFALLALFYLKVPESWPIPADALQ-AMVLGYLSHILADML 119 Query: 120 TPTGIPLLWPYHWRFCLPILHP-NSPIGEIFFCVLFLIYAI 159 TP G+PLLWP WRF LPIL P E F C+ ++A+ Sbjct: 120 TPAGVPLLWPCRWRFRLPILVPQKGNQLERFLCMALFVFAV 160 >gnl|CDD|116562 pfam07952, Toxin_trans, Clostridium neurotoxin, Translocation domain. The Clostridium neurotoxin family is composed of tetanus neurotoxin and seven serotypes of botulinum neurotoxin. The structure of the botulinum neurotoxin reveals a four domain protein. The N-terminal catalytic domain (pfam01742), the central translocation domains and two receptor binding domains. Subsequent to cell surface binding and receptor mediated endocytosis of the neurotoxin, an acid induced conformational change in the neurotoxin translocation domain is believed to allow the domain to penetrate the endosome and from a pore, thereby facilitating the passage of the catalytic domain across the membrane into the cytosol. The structure of the translocation reveals a pair of helices that are 105 Angstroms long and is structurally distinct from other pore forming toxins. Length = 318 Score = 30.1 bits (68), Expect = 0.27 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 74 FTHSILAVILYKWLIHHFFPSELISY--QGLQDALIIGYVSHLVADVLT 120 T S+ +L ++ FF S+ I+ + +Q AL +G+V ++ D T Sbjct: 20 LTSSVDDALLNSSKVYTFFSSDFINKVNKPVQAALFLGWVKQVIDDFTT 68 >gnl|CDD|184308 PRK13761, PRK13761, hypothetical protein; Provisional. Length = 248 Score = 27.8 bits (63), Expect = 1.3 Identities = 8/25 (32%), Positives = 13/25 (52%) Query: 33 TVVLGALLSCLLPDIDHPRSFISKR 57 VLG +P +DH R+ +S+ Sbjct: 122 KEVLGTDEDARIPGLDHERAKVSED 146 >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional. Length = 793 Score = 27.0 bits (59), Expect = 2.3 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Query: 111 VSHLVADVLTPTGIPLLWPYHWRFCLPILHP 141 +S L VL P I L WP FCL +LHP Sbjct: 222 MSSLRHRVLPPQ-ILLNWPKEASFCLWLLHP 251 >gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional. Length = 679 Score = 25.9 bits (58), Expect = 5.7 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 8 IFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLP 45 IF L L ++++ VL ALL CL+P Sbjct: 228 IFLLVVATLP----PFAAYSGGALSITVLVALLVCLIP 261 >gnl|CDD|135467 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated. Length = 370 Score = 25.6 bits (56), Expect = 6.4 Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 114 LVADVLTPTGIPLLWPYHWRF 134 LVAD TG PL+W RF Sbjct: 147 LVADAAEITGTPLVWGTVLRF 167 >gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional. Length = 182 Score = 25.3 bits (55), Expect = 7.1 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 8/47 (17%) Query: 111 VSHLVADVLTPTG-------IPLLWPYHWRFCLPILHPNSPIGEIFF 150 ++H VA L+ G I LW R LP+LHP S G + F Sbjct: 33 MAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSA-GNLLF 78 >gnl|CDD|177745 PLN00137, PLN00137, NHAD transporter family protein; Provisional. Length = 424 Score = 25.0 bits (55), Expect = 8.2 Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 22 FLSSFTDAEWGTVVLGALLSCLLPDIDHPRSF 53 FLSS D T+V+ +LL L+P ++ + Sbjct: 113 FLSSILDNLTTTIVMVSLLRKLVPPSEYRKLL 144 >gnl|CDD|116392 pfam07778, Mis6, Mis6. Mis6 is an essential centromere connector protein acting during G1-S phase of the cell cycle. Mis6 is thought to be required for recruiting CENP-A, the centromere- specific histone H3 variant, an important event for centromere function and chromosome segregation during mitosis. Length = 470 Score = 25.2 bits (55), Expect = 8.6 Identities = 24/120 (20%), Positives = 40/120 (33%), Gaps = 26/120 (21%) Query: 6 HCIFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKTLSLLT 65 I L V L+ K + V ++ CL P + K L Sbjct: 70 EEIDILLDVALSGK----------HFDNAVNTRIIKCLYPATKISEDSVVKAVSWL---- 115 Query: 66 SCISSHRGFTHSILAVILYKWLIH--HFFP-SELIS------YQGLQDALIIGYVSHLVA 116 C+ + + V+L +WLI F E ++ + L D + Y+ HL+ Sbjct: 116 -CVGQLK--CSGNIQVLLLRWLIAVYDFLDHKEQLNQLYGVLFNFLDDDALRPYICHLLY 172 >gnl|CDD|180449 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated. Length = 538 Score = 24.9 bits (55), Expect = 9.2 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Query: 114 LVADVLTPTGIPLLWPYHWRFCLP 137 LV DVL PL P+ +++C P Sbjct: 194 LVVDVLI-ANDPLGGPHTYQYCDP 216 >gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional. Length = 586 Score = 25.1 bits (55), Expect = 9.2 Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%) Query: 86 WLIHHFFPSELISYQGLQDALIIGYVSHLVADVLTPTGI 124 H P+ I + +++AL L+ DV P G+ Sbjct: 206 HDFDHPIPTGEIDLEEIREALEAAVRKRLMGDV--PFGL 242 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.331 0.145 0.478 Gapped Lambda K H 0.267 0.0781 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,736,658 Number of extensions: 166537 Number of successful extensions: 418 Number of sequences better than 10.0: 1 Number of HSP's gapped: 415 Number of HSP's successfully gapped: 26 Length of query: 163 Length of database: 5,994,473 Length adjustment: 86 Effective length of query: 77 Effective length of database: 4,136,185 Effective search space: 318486245 Effective search space used: 318486245 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 53 (24.1 bits)