RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62] (163 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.3 bits (68), Expect = 0.21 Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 49/107 (45%) Query: 45 PDIDH----PRSF--ISKRFKTLSLLTSCISSH-------------RGFT-HS---ILAV 81 PD D+ P S I + L +++ +G T HS + AV Sbjct: 226 PDKDYLLSIPISCPLIG----VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281 Query: 82 IL---------YK----------WL---IHHFFPSELISYQGLQDAL 106 + + ++ + +P+ + L+D+L Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL 328 Score = 27.2 bits (60), Expect = 1.9 Identities = 19/89 (21%), Positives = 25/89 (28%), Gaps = 39/89 (43%) Query: 52 SFISKRFKTLSLLTSCISSHRGFTHSILAVILYKWLI---HHFFPSEL---------ISY 99 S R L+L SH H + L+ F S+L Sbjct: 2 DAYSTR--PLTL------SHGSLEHVL--------LVPTASFFIASQLQEQFNKILPEPT 45 Query: 100 QGL-QD----------ALIIGYVSHLVAD 117 +G D +GYVS LV Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEP 74 >1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* 3g58_A* ... Length = 377 Score = 25.7 bits (56), Expect = 5.7 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 6 HCI-FALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPR---SFISKRFKTL 61 H A ++ +L + FTD E +L A+ + + D+DHP F+ L Sbjct: 87 HAADVAQSTHVLLSTPALDAVFTDLE----ILAAIFAAAIHDVDHPGVSNQFLINTNSEL 142 Query: 62 SLLTSCIS 69 +L+ + S Sbjct: 143 ALMYNDES 150 >2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, metal-binding, Ca and membrane binding, gangrene determinant, zinc, toxin, calcium; 1.80A {Clostridium perfringens} PDB: 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Length = 370 Score = 25.3 bits (55), Expect = 7.3 Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 4/30 (13%) Query: 109 GYVSHLVADVLTP----TGIPLLWPYHWRF 134 G H D+ TP + H +F Sbjct: 122 GEAMHYFGDIDTPYHPANVTAVDSAGHVKF 151 >3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Length = 421 Score = 25.0 bits (54), Expect = 7.7 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 8/68 (11%) Query: 6 HCI-FALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPR---SFISKRFKTL 61 H ++ +L + FTD E +L A+ + + D+DHP F+ L Sbjct: 166 HAADVVQSTHVLLSTPALEAVFTDLE----ILAAIFASAIHDVDHPGVSNQFLINTNSEL 221 Query: 62 SLLTSCIS 69 +L+ + S Sbjct: 222 ALMYNDSS 229 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.331 0.145 0.478 Gapped Lambda K H 0.267 0.0578 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,463,115 Number of extensions: 61053 Number of successful extensions: 185 Number of sequences better than 10.0: 1 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 14 Length of query: 163 Length of database: 5,693,230 Length adjustment: 85 Effective length of query: 78 Effective length of database: 3,632,490 Effective search space: 283334220 Effective search space used: 283334220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 53 (24.5 bits)