BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781022|ref|YP_003065435.1| hypothetical protein
CLIBASIA_04620 [Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781022|ref|YP_003065435.1| hypothetical protein CLIBASIA_04620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 163

 Score =  327 bits (838), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MTYEGHCIFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT 60
           MTYEGHCIFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT
Sbjct: 1   MTYEGHCIFALASVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT 60

Query: 61  LSLLTSCISSHRGFTHSILAVILYKWLIHHFFPSELISYQGLQDALIIGYVSHLVADVLT 120
           LSLLTSCISSHRGFTHSILAVILYKWLIHHFFPSELISYQGLQDALIIGYVSHLVADVLT
Sbjct: 61  LSLLTSCISSHRGFTHSILAVILYKWLIHHFFPSELISYQGLQDALIIGYVSHLVADVLT 120

Query: 121 PTGIPLLWPYHWRFCLPILHPNSPIGEIFFCVLFLIYAIISVH 163
           PTGIPLLWPYHWRFCLPILHPNSPIGEIFFCVLFLIYAIISVH
Sbjct: 121 PTGIPLLWPYHWRFCLPILHPNSPIGEIFFCVLFLIYAIISVH 163


>gi|254781175|ref|YP_003065588.1| UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 296

 Score = 23.5 bits (49), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 104 DALIIGYVSHLVADVLTPTGIPL 126
           + L IG + H +AD +T TGI +
Sbjct: 2   EMLQIGRLQHTIADSITITGIGI 24


>gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 261

 Score = 22.3 bits (46), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 13/69 (18%)

Query: 13  SVILAKKVNFLSSFTDAEWGTVVLGALLSCLLPDIDHPRSFISKRFKT---------LSL 63
           SVIL    + L      +W +++     S LLP ID  ++ + K+F+          L  
Sbjct: 125 SVILGGVGSVLYDSDVVDWQSLID----SFLLPSIDEVQNPLGKKFRKFADLDPGNDLKA 180

Query: 64  LTSCISSHR 72
           L SC+S  R
Sbjct: 181 LASCLSMIR 189


>gi|255764505|ref|YP_003065248.2| polysialic acid capsule expression protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 21.2 bits (43), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 138 ILHPNSPIGEIFFCVLFLIYAIISV 162
           +LHP   +G +F C   ++++  S+
Sbjct: 206 VLHPGGKLGTLFVCASDVMHSGDSI 230


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.331    0.145    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,712
Number of Sequences: 1233
Number of extensions: 4533
Number of successful extensions: 10
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 163
length of database: 328,796
effective HSP length: 67
effective length of query: 96
effective length of database: 246,185
effective search space: 23633760
effective search space used: 23633760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 35 (18.1 bits)